Wall clock time and date at job start Tue Mar 31 2020 12:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47341 * 2 1 4 4 C 1.52998 * 109.47341 * 180.02562 * 3 2 1 5 5 N 1.46491 * 109.47188 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00075 * 264.99300 * 5 4 3 7 7 H 1.08002 * 120.00136 * 143.43087 * 6 5 4 8 8 C 1.38809 * 119.99954 * 323.42716 * 6 5 4 9 9 N 1.31619 * 120.00311 * 339.25669 * 8 6 5 10 10 Si 1.86802 * 119.99832 * 159.26297 * 8 6 5 11 11 H 1.48494 * 109.47446 * 59.99963 * 10 8 6 12 12 H 1.48511 * 109.46896 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.46966 * 299.99573 * 10 8 6 14 14 C 1.46499 * 120.00279 * 84.99285 * 5 4 3 15 15 F 1.39907 * 109.46811 * 303.94238 * 14 5 4 16 16 F 1.39899 * 109.47459 * 183.94324 * 14 5 4 17 17 C 1.50703 * 109.46854 * 63.93813 * 14 5 4 18 18 C 1.38195 * 119.60535 * 188.25235 * 17 14 5 19 19 C 1.38674 * 119.18711 * 179.77707 * 18 17 14 20 20 C 1.50699 * 120.77986 * 180.22381 * 19 18 17 21 21 C 1.38614 * 118.43487 * 0.49547 * 19 18 17 22 22 C 1.38347 * 119.15154 * 359.74533 * 21 19 18 23 23 Cl 1.73601 * 119.63368 * 179.97438 * 22 21 19 24 24 N 1.31874 * 119.61175 * 8.53289 * 17 14 5 25 25 H 1.09004 * 109.47190 * 60.00061 * 1 2 3 26 26 H 1.09005 * 109.46952 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47021 * 299.99895 * 1 2 3 28 28 H 1.09003 * 109.47406 * 240.00084 * 2 1 3 29 29 H 1.09004 * 109.47190 * 119.99939 * 2 1 3 30 30 H 1.08996 * 109.46977 * 60.00078 * 3 2 1 31 31 H 1.09004 * 109.46928 * 300.00099 * 3 2 1 32 32 H 1.09003 * 109.46667 * 60.00170 * 4 3 2 33 33 H 1.08997 * 109.47093 * 300.00347 * 4 3 2 34 34 H 0.96993 * 120.00479 * 179.97438 * 9 8 6 35 35 H 1.08003 * 120.40876 * 0.02562 * 18 17 14 36 36 H 1.09006 * 109.46806 * 270.27552 * 20 19 18 37 37 H 1.08993 * 109.47057 * 30.27673 * 20 19 18 38 38 H 1.08995 * 109.46982 * 150.27951 * 20 19 18 39 39 H 1.08000 * 120.42009 * 179.72822 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8236 -0.0013 6 6 4.3837 3.4343 -1.1830 7 1 4.1747 4.4846 -1.3235 8 6 4.9821 2.7035 -2.2001 9 7 5.6029 1.5765 -1.9233 10 14 4.9066 3.3199 -3.9619 11 1 5.5553 4.6528 -4.0483 12 1 5.6158 2.3650 -4.8512 13 1 3.4881 3.4312 -4.3870 14 6 4.1987 3.5516 1.2623 15 9 2.9727 3.5561 1.9365 16 9 4.5919 4.8684 1.0007 17 6 5.2399 2.8768 2.1177 18 6 5.4197 3.2870 3.4251 19 6 6.3770 2.6570 4.2059 20 6 6.5997 3.0719 5.6374 21 6 7.1282 1.6404 3.6369 22 6 6.8957 1.2870 2.3197 23 17 7.8297 0.0161 1.5943 24 7 5.9724 1.9058 1.6082 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9329 0.9288 -0.8909 33 1 3.9337 0.9285 0.8891 34 1 6.0208 1.0656 -2.6341 35 1 4.8193 4.0857 3.8350 36 1 7.3516 3.8603 5.6744 37 1 5.6646 3.4416 6.0582 38 1 6.9441 2.2141 6.2150 39 1 7.8854 1.1310 4.2145 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165159037.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:43 Heat of formation + Delta-G solvation = -49.742383 kcal Electronic energy + Delta-G solvation = -25751.364075 eV Core-core repulsion = 21777.507993 eV Total energy + Delta-G solvation = -3973.856082 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.101 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -47.97516 -46.09856 -40.01942 -36.27932 -36.00424 -34.03304 -33.48405 -31.59117 -30.62793 -28.05957 -27.87847 -25.69111 -23.68511 -22.81953 -22.03765 -20.48726 -19.92481 -17.49490 -16.96039 -16.70902 -16.01643 -15.75438 -15.63855 -14.89213 -14.54654 -14.37118 -14.24627 -13.35978 -13.12265 -13.10505 -12.89315 -12.84594 -12.66007 -12.52591 -12.48268 -12.22134 -11.98803 -11.69958 -11.31057 -11.24682 -11.02266 -10.89037 -10.82740 -10.73989 -10.44911 -10.21514 -10.08923 -9.84805 -9.51921 -9.34347 -8.98146 -8.74542 -8.53160 -6.86248 -5.81670 -3.44363 1.07000 1.36714 2.18085 3.39297 3.43874 3.45793 3.82390 3.92531 4.37098 4.60497 4.95003 4.96459 5.04863 5.18654 5.30414 5.41270 5.44787 5.50788 5.56974 5.61901 5.72776 5.77967 5.85516 6.01253 6.05256 6.20834 6.25281 6.32376 6.49003 6.55205 6.60227 6.67640 6.92348 7.00374 7.29251 7.76774 7.81279 8.16104 8.39355 9.06510 9.62042 10.18816 11.19221 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.010277 B = 0.005999 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.000992 B = 4666.605331 C = 5206.719675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C -0.143 4.143 4 C 0.165 3.835 5 N -0.571 5.571 6 C -0.281 4.281 7 H 0.068 0.932 8 C 0.030 3.970 9 N -0.854 5.854 10 Si 0.902 3.098 11 H -0.280 1.280 12 H -0.289 1.289 13 H -0.280 1.280 14 C 0.554 3.446 15 F -0.212 7.212 16 F -0.184 7.184 17 C 0.098 3.902 18 C -0.152 4.152 19 C -0.044 4.044 20 C -0.111 4.111 21 C -0.156 4.156 22 C 0.176 3.824 23 Cl -0.031 7.031 24 N -0.388 5.388 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.028 0.972 34 H 0.255 0.745 35 H 0.140 0.860 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 -1.769 12.526 12.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.183 4.183 4 C 0.040 3.960 5 N -0.294 5.294 6 C -0.409 4.409 7 H 0.086 0.914 8 C -0.174 4.174 9 N -0.493 5.493 10 Si 0.731 3.269 11 H -0.206 1.206 12 H -0.215 1.215 13 H -0.206 1.206 14 C 0.428 3.572 15 F -0.193 7.193 16 F -0.165 7.165 17 C -0.045 4.045 18 C -0.173 4.173 19 C -0.052 4.052 20 C -0.167 4.167 21 C -0.177 4.177 22 C 0.010 3.990 23 Cl -0.002 7.002 24 N -0.097 5.097 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.158 0.842 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.393 -2.234 11.463 11.686 hybrid contribution 0.293 0.531 -0.107 0.615 sum 0.686 -1.704 11.356 11.504 Atomic orbital electron populations 1.21759 0.96909 1.00406 1.01396 1.21441 0.94716 0.98366 1.01248 1.22320 0.99979 0.94582 1.01391 1.20909 0.88764 0.83721 1.02574 1.44696 1.73263 1.12517 0.98960 1.18905 1.36829 0.96100 0.89096 0.91385 1.25210 0.95325 0.97690 0.99181 1.70112 1.32219 1.15574 1.31376 0.86411 0.77931 0.78221 0.84368 1.20620 1.21523 1.20643 1.18097 0.76991 0.77003 0.85110 1.93013 1.47852 1.96456 1.82028 1.92950 1.91104 1.37923 1.94500 1.22271 0.96768 0.93832 0.91599 1.22042 0.99280 1.01251 0.94696 1.20172 0.94119 0.94152 0.96786 1.20780 1.03003 1.02133 0.90797 1.21739 1.01937 0.99435 0.94560 1.21643 0.94422 0.93475 0.89435 1.98394 1.69275 1.47838 1.84705 1.66928 1.02056 1.05023 1.35675 0.93029 0.93684 0.93271 0.92334 0.92999 0.93224 0.92291 0.87868 0.95407 0.93455 0.84238 0.90412 0.90798 0.90954 0.84147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.12 -2.07 5.93 -26.73 -0.16 -2.23 16 3 C -0.14 -2.96 5.38 -26.73 -0.14 -3.11 16 4 C 0.16 3.93 4.64 -4.05 -0.02 3.91 16 5 N -0.57 -14.48 2.14 -172.93 -0.37 -14.85 16 6 C -0.28 -7.71 8.89 -15.06 -0.13 -7.85 16 7 H 0.07 1.91 7.50 -52.49 -0.39 1.52 16 8 C 0.03 0.81 4.93 -17.43 -0.09 0.72 16 9 N -0.85 -23.76 11.43 55.49 0.63 -23.13 16 10 Si 0.90 21.48 29.60 -169.99 -5.03 16.45 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.55 12.76 2.36 -5.19 -0.01 12.75 16 15 F -0.21 -4.56 15.36 2.25 0.03 -4.53 16 16 F -0.18 -4.35 15.86 2.25 0.04 -4.32 16 17 C 0.10 2.05 5.80 -82.59 -0.48 1.57 16 18 C -0.15 -2.50 9.28 -39.44 -0.37 -2.86 16 19 C -0.04 -0.60 5.92 -104.32 -0.62 -1.22 16 20 C -0.11 -0.99 10.06 36.01 0.36 -0.63 16 21 C -0.16 -2.26 9.59 -39.40 -0.38 -2.63 16 22 C 0.18 3.26 7.27 -17.45 -0.13 3.13 16 23 Cl -0.03 -0.53 29.11 -51.86 -1.51 -2.04 16 24 N -0.39 -8.55 8.12 -6.62 -0.05 -8.60 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 1.02 6.75 -51.93 -0.35 0.67 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.10 2.74 5.48 -51.93 -0.28 2.45 16 33 H 0.03 0.66 6.68 -51.93 -0.35 0.32 16 34 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.14 1.99 8.06 -52.48 -0.42 1.56 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 39 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -29.66 346.94 -7.98 -37.64 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -5.16 Total: -1.62 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -1.79 Total: -0.23 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.21 Total: -46.58 kcal Atomic # 9 Polarization: -8.91 SS G_CDS: 0.07 Total: -8.84 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.51 Total: -2.04 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.66 -7.98 -37.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165159037.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.099 kcal (2) G-P(sol) polarization free energy of solvation -29.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds