Wall clock time and date at job start Tue Mar 31 2020 12:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47341 * 2 1 4 4 C 1.52998 * 109.47341 * 180.02562 * 3 2 1 5 5 N 1.46491 * 109.47188 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00075 * 264.99300 * 5 4 3 7 7 H 1.08002 * 120.00136 * 143.43087 * 6 5 4 8 8 C 1.38809 * 119.99954 * 323.42716 * 6 5 4 9 9 N 1.31619 * 120.00311 * 339.25669 * 8 6 5 10 10 Si 1.86802 * 119.99832 * 159.26297 * 8 6 5 11 11 H 1.48494 * 109.47446 * 59.99963 * 10 8 6 12 12 H 1.48511 * 109.46896 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.46966 * 299.99573 * 10 8 6 14 14 C 1.46499 * 120.00279 * 84.99285 * 5 4 3 15 15 F 1.39907 * 109.46811 * 303.94238 * 14 5 4 16 16 F 1.39899 * 109.47459 * 183.94324 * 14 5 4 17 17 C 1.50703 * 109.46854 * 63.93813 * 14 5 4 18 18 C 1.38195 * 119.60535 * 188.25235 * 17 14 5 19 19 C 1.38674 * 119.18711 * 179.77707 * 18 17 14 20 20 C 1.50699 * 120.77986 * 180.22381 * 19 18 17 21 21 C 1.38614 * 118.43487 * 0.49547 * 19 18 17 22 22 C 1.38347 * 119.15154 * 359.74533 * 21 19 18 23 23 Cl 1.73601 * 119.63368 * 179.97438 * 22 21 19 24 24 N 1.31874 * 119.61175 * 8.53289 * 17 14 5 25 25 H 1.09004 * 109.47190 * 60.00061 * 1 2 3 26 26 H 1.09005 * 109.46952 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47021 * 299.99895 * 1 2 3 28 28 H 1.09003 * 109.47406 * 240.00084 * 2 1 3 29 29 H 1.09004 * 109.47190 * 119.99939 * 2 1 3 30 30 H 1.08996 * 109.46977 * 60.00078 * 3 2 1 31 31 H 1.09004 * 109.46928 * 300.00099 * 3 2 1 32 32 H 1.09003 * 109.46667 * 60.00170 * 4 3 2 33 33 H 1.08997 * 109.47093 * 300.00347 * 4 3 2 34 34 H 0.96993 * 120.00479 * 179.97438 * 9 8 6 35 35 H 1.08003 * 120.40876 * 0.02562 * 18 17 14 36 36 H 1.09006 * 109.46806 * 270.27552 * 20 19 18 37 37 H 1.08993 * 109.47057 * 30.27673 * 20 19 18 38 38 H 1.08995 * 109.46982 * 150.27951 * 20 19 18 39 39 H 1.08000 * 120.42009 * 179.72822 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8236 -0.0013 6 6 4.3837 3.4343 -1.1830 7 1 4.1747 4.4846 -1.3235 8 6 4.9821 2.7035 -2.2001 9 7 5.6029 1.5765 -1.9233 10 14 4.9066 3.3199 -3.9619 11 1 5.5553 4.6528 -4.0483 12 1 5.6158 2.3650 -4.8512 13 1 3.4881 3.4312 -4.3870 14 6 4.1987 3.5516 1.2623 15 9 2.9727 3.5561 1.9365 16 9 4.5919 4.8684 1.0007 17 6 5.2399 2.8768 2.1177 18 6 5.4197 3.2870 3.4251 19 6 6.3770 2.6570 4.2059 20 6 6.5997 3.0719 5.6374 21 6 7.1282 1.6404 3.6369 22 6 6.8957 1.2870 2.3197 23 17 7.8297 0.0161 1.5943 24 7 5.9724 1.9058 1.6082 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9329 0.9288 -0.8909 33 1 3.9337 0.9285 0.8891 34 1 6.0208 1.0656 -2.6341 35 1 4.8193 4.0857 3.8350 36 1 7.3516 3.8603 5.6744 37 1 5.6646 3.4416 6.0582 38 1 6.9441 2.2141 6.2150 39 1 7.8854 1.1310 4.2145 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165159037.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:42 Heat of formation + Delta-G solvation = -64.896282 kcal Electronic energy + Delta-G solvation = -25752.021197 eV Core-core repulsion = 21777.507993 eV Total energy + Delta-G solvation = -3974.513205 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.101 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.77127 -47.89666 -41.34824 -37.86471 -37.55296 -35.40447 -34.96273 -33.31839 -32.24437 -29.68042 -28.86544 -27.46224 -25.38070 -24.19903 -23.55267 -22.00248 -21.59033 -19.34931 -18.51086 -18.33941 -17.79628 -17.35690 -17.02068 -16.29535 -16.24657 -16.05406 -15.62368 -15.07163 -14.72104 -14.65197 -14.31733 -14.26215 -13.99921 -13.97396 -13.74809 -13.61448 -13.44005 -13.03007 -12.97478 -12.83573 -12.66839 -12.58973 -12.44465 -12.18038 -12.12543 -11.87723 -11.78129 -11.58233 -11.28454 -10.66247 -10.51400 -10.37692 -10.08315 -8.85187 -7.87841 -5.54554 -0.25755 0.13969 0.84919 1.46068 1.47863 1.54534 2.26498 2.45719 2.52277 3.09152 3.20063 3.55449 3.72070 3.90542 3.96670 4.11094 4.16911 4.20479 4.23207 4.38146 4.41996 4.63818 4.64838 4.72142 4.84292 4.95209 5.00494 5.08763 5.10890 5.11272 5.19716 5.29467 5.46036 5.48692 5.50715 5.66052 5.84050 6.34268 6.79281 7.02939 7.57582 8.15635 9.10360 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.010277 B = 0.005999 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.000992 B = 4666.605331 C = 5206.719675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.132 4.132 4 C 0.176 3.824 5 N -0.586 5.586 6 C -0.297 4.297 7 H 0.053 0.947 8 C -0.009 4.009 9 N -0.873 5.873 10 Si 0.960 3.040 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.549 3.451 15 F -0.208 7.208 16 F -0.195 7.195 17 C 0.066 3.934 18 C -0.148 4.148 19 C -0.028 4.028 20 C -0.107 4.107 21 C -0.137 4.137 22 C 0.152 3.848 23 Cl -0.036 7.036 24 N -0.439 5.439 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.021 0.979 34 H 0.252 0.748 35 H 0.160 0.840 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.473 -1.923 14.912 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.172 4.172 4 C 0.052 3.948 5 N -0.311 5.311 6 C -0.426 4.426 7 H 0.071 0.929 8 C -0.211 4.211 9 N -0.512 5.512 10 Si 0.787 3.213 11 H -0.205 1.205 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.424 3.576 15 F -0.190 7.190 16 F -0.176 7.176 17 C -0.075 4.075 18 C -0.169 4.169 19 C -0.036 4.036 20 C -0.163 4.163 21 C -0.157 4.157 22 C -0.014 4.014 23 Cl -0.007 7.007 24 N -0.149 5.149 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.039 0.961 34 H 0.061 0.939 35 H 0.177 0.823 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 0.500 -2.381 13.871 14.082 hybrid contribution 0.285 0.599 -0.733 0.988 sum 0.786 -1.782 13.138 13.281 Atomic orbital electron populations 1.21703 0.94329 1.02107 1.01700 1.21398 0.96931 0.95730 1.01250 1.22172 0.97789 0.96849 1.00345 1.20718 0.90419 0.83058 1.00653 1.44718 1.74117 1.12764 0.99466 1.18935 1.37173 0.95688 0.90831 0.92886 1.25814 0.95122 0.97980 1.02157 1.70251 1.32724 1.16364 1.31889 0.85515 0.77869 0.77586 0.80350 1.20548 1.21221 1.20256 1.18187 0.77853 0.76470 0.85132 1.92999 1.47876 1.96418 1.81662 1.92916 1.91222 1.38781 1.94672 1.21755 0.97395 0.95259 0.93113 1.22254 1.00005 1.01528 0.93068 1.20723 0.91822 0.92391 0.98701 1.20935 1.04452 1.03703 0.87246 1.22179 1.01855 0.98830 0.92872 1.21987 0.94568 0.93895 0.90904 1.98381 1.69169 1.48021 1.85148 1.66639 1.03837 1.06453 1.37953 0.93129 0.91286 0.92592 0.92981 0.92374 0.93281 0.94070 0.90789 0.96110 0.93853 0.82266 0.88614 0.89389 0.88473 0.80190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.91 71.98 0.71 -3.18 16 2 C -0.11 -3.96 5.93 30.59 0.18 -3.78 16 3 C -0.13 -5.60 5.38 30.59 0.16 -5.44 16 4 C 0.18 8.73 4.64 86.38 0.40 9.13 16 5 N -0.59 -30.89 2.14 -701.02 -1.50 -32.39 16 6 C -0.30 -17.00 8.89 84.03 0.75 -16.25 16 7 H 0.05 3.12 7.50 -2.91 -0.02 3.09 16 8 C -0.01 -0.50 4.93 84.86 0.42 -0.09 16 9 N -0.87 -50.32 11.43 21.65 0.25 -50.07 16 10 Si 0.96 45.31 29.60 68.60 2.03 47.34 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 14 C 0.55 25.96 2.36 85.63 0.20 26.17 16 15 F -0.21 -9.09 15.36 44.97 0.69 -8.40 16 16 F -0.19 -9.52 15.86 44.97 0.71 -8.81 16 17 C 0.07 2.79 5.80 42.54 0.25 3.04 16 18 C -0.15 -4.61 9.28 22.36 0.21 -4.40 16 19 C -0.03 -0.67 5.92 -19.67 -0.12 -0.78 16 20 C -0.11 -1.37 10.06 71.24 0.72 -0.65 16 21 C -0.14 -3.58 9.59 22.39 0.21 -3.36 16 22 C 0.15 5.55 7.27 84.70 0.62 6.17 16 23 Cl -0.04 -1.24 29.11 -2.72 -0.08 -1.32 16 24 N -0.44 -19.71 8.12 -174.85 -1.42 -21.13 16 25 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 2.05 6.75 -2.39 -0.02 2.04 16 31 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 4.13 5.48 -2.39 -0.01 4.11 16 33 H 0.02 1.03 6.68 -2.39 -0.02 1.02 16 34 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 35 H 0.16 4.19 8.06 -2.91 -0.02 4.16 16 36 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.09 0.95 8.10 -2.39 -0.02 0.93 16 38 H 0.10 0.84 8.10 -2.39 -0.02 0.83 16 39 H 0.18 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -68.07 346.94 6.46 -61.61 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 1.06 Total: 6.60 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 4.71 Total: 6.58 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -2.67 Total: -103.60 kcal Atomic # 9 Polarization: -18.61 SS G_CDS: 1.40 Total: -17.21 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.32 kcal Total: -68.07 6.46 -61.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165159037.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.283 kcal (2) G-P(sol) polarization free energy of solvation -68.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds