Wall clock time and date at job start Tue Mar 31 2020 12:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46988 * 2 1 4 4 C 1.53001 * 109.46813 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46740 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00360 * 264.54212 * 5 4 3 7 7 H 1.08003 * 119.99995 * 144.53206 * 6 5 4 8 8 C 1.38807 * 119.99926 * 324.54255 * 6 5 4 9 9 N 1.31622 * 120.00374 * 335.98421 * 8 6 5 10 10 Si 1.86807 * 120.00094 * 155.99333 * 8 6 5 11 11 H 1.48489 * 109.47401 * 89.99303 * 10 8 6 12 12 H 1.48502 * 109.47152 * 210.00040 * 10 8 6 13 13 H 1.48506 * 109.46783 * 329.99108 * 10 8 6 14 14 C 1.46501 * 119.99669 * 84.55237 * 5 4 3 15 15 F 1.39901 * 109.46904 * 302.74787 * 14 5 4 16 16 F 1.39898 * 109.46956 * 182.75000 * 14 5 4 17 17 C 1.50703 * 109.47620 * 62.74625 * 14 5 4 18 18 N 1.31902 * 119.60525 * 8.09036 * 17 14 5 19 19 C 1.31955 * 121.70583 * 180.02562 * 18 17 14 20 20 Cl 1.73599 * 119.63502 * 179.97438 * 19 18 17 21 21 C 1.38390 * 120.72986 * 0.02562 * 19 18 17 22 22 C 1.38568 * 119.14910 * 359.72747 * 21 19 18 23 23 C 1.38136 * 119.61039 * 188.11012 * 17 14 5 24 24 C 1.50709 * 120.40278 * 359.97438 * 23 17 14 25 25 H 1.08998 * 109.46905 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46977 * 300.00139 * 1 2 3 27 27 H 1.08998 * 109.47286 * 59.99597 * 1 2 3 28 28 H 1.08998 * 109.46610 * 240.00037 * 2 1 3 29 29 H 1.08994 * 109.46869 * 120.00136 * 2 1 3 30 30 H 1.08997 * 109.47192 * 59.99780 * 3 2 1 31 31 H 1.09004 * 109.47014 * 300.00195 * 3 2 1 32 32 H 1.08993 * 109.47429 * 60.00468 * 4 3 2 33 33 H 1.08992 * 109.47114 * 299.99278 * 4 3 2 34 34 H 0.96991 * 120.00428 * 180.02562 * 9 8 6 35 35 H 1.08000 * 120.42513 * 179.97438 * 21 19 18 36 36 H 1.08002 * 120.78015 * 180.26893 * 22 21 19 37 37 H 1.08998 * 109.47213 * 90.00150 * 24 23 17 38 38 H 1.08993 * 109.46959 * 330.00049 * 24 23 17 39 39 H 1.09002 * 109.46675 * 209.99728 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.3924 3.4314 -1.1820 7 1 4.2006 4.4852 -1.3202 8 6 4.9773 2.6929 -2.2015 9 7 5.6350 1.5880 -1.9199 10 14 4.8313 3.2671 -3.9731 11 1 5.9732 4.1582 -4.3003 12 1 4.8470 2.0897 -4.8779 13 1 3.5574 4.0098 -4.1493 14 6 4.1894 3.5548 1.2615 15 9 2.9521 3.5844 1.9138 16 9 4.6107 4.8632 1.0013 17 6 5.2031 2.8657 2.1382 18 7 5.9209 1.8734 1.6483 19 6 6.8194 1.2408 2.3790 20 17 7.7339 -0.0586 1.6796 21 6 7.0399 1.6009 3.6969 22 6 6.3075 2.6425 4.2435 23 6 5.3692 3.2803 3.4454 24 6 4.5445 4.4151 3.9962 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9330 0.9289 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 6.0440 1.0722 -2.6322 35 1 7.7761 1.0795 4.2905 36 1 6.4612 2.9483 5.2678 37 1 3.6275 4.0193 4.4326 38 1 4.2950 5.1067 3.1916 39 1 5.1147 4.9398 4.7628 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165159497.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:50 Heat of formation + Delta-G solvation = -46.391552 kcal Electronic energy + Delta-G solvation = -26106.118261 eV Core-core repulsion = 22132.407482 eV Total energy + Delta-G solvation = -3973.710779 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.101 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.04640 -46.10282 -40.01741 -36.29241 -35.99151 -33.73754 -33.27067 -32.18747 -30.84076 -28.19115 -27.18565 -25.55416 -23.92182 -22.63005 -21.87129 -20.71814 -20.08444 -17.58035 -17.26473 -16.74344 -16.04899 -15.62499 -15.39447 -14.57340 -14.51325 -14.34467 -14.20698 -13.35850 -13.25280 -13.15405 -13.02150 -12.81967 -12.60443 -12.53137 -12.31635 -12.02688 -11.98941 -11.73041 -11.26794 -11.12892 -11.04708 -10.89163 -10.82126 -10.70238 -10.47337 -10.22183 -10.10298 -9.85714 -9.67903 -9.45108 -8.96531 -8.55782 -8.52013 -6.88848 -5.84237 -3.42580 1.04948 1.39878 2.19702 3.36784 3.44136 3.47843 3.81714 3.94008 4.37683 4.70225 4.91150 4.97704 5.03134 5.23097 5.34311 5.36974 5.54835 5.55950 5.68224 5.73126 5.73355 5.81008 6.01498 6.06256 6.10941 6.19443 6.27261 6.31287 6.47912 6.53744 6.61632 6.66683 6.90468 6.98778 7.27449 7.73323 7.81076 8.14288 8.36603 9.04973 9.61692 10.18246 11.17339 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.009784 B = 0.006462 C = 0.005844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.172200 B = 4331.868345 C = 4789.833270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.143 4.143 4 C 0.166 3.834 5 N -0.571 5.571 6 C -0.282 4.282 7 H 0.069 0.931 8 C 0.030 3.970 9 N -0.852 5.852 10 Si 0.898 3.102 11 H -0.285 1.285 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.557 3.443 15 F -0.211 7.211 16 F -0.183 7.183 17 C 0.091 3.909 18 N -0.382 5.382 19 C 0.164 3.836 20 Cl -0.032 7.032 21 C -0.149 4.149 22 C -0.079 4.079 23 C -0.115 4.115 24 C -0.116 4.116 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.029 0.971 34 H 0.255 0.745 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.767 -1.305 12.055 12.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.183 4.183 4 C 0.041 3.959 5 N -0.295 5.295 6 C -0.411 4.411 7 H 0.087 0.913 8 C -0.174 4.174 9 N -0.490 5.490 10 Si 0.727 3.273 11 H -0.212 1.212 12 H -0.214 1.214 13 H -0.201 1.201 14 C 0.431 3.569 15 F -0.193 7.193 16 F -0.164 7.164 17 C -0.052 4.052 18 N -0.090 5.090 19 C -0.002 4.002 20 Cl -0.003 7.003 21 C -0.170 4.170 22 C -0.105 4.105 23 C -0.118 4.118 24 C -0.174 4.174 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.727 -1.782 10.985 11.152 hybrid contribution 0.357 0.417 -0.064 0.552 sum -0.370 -1.366 10.921 11.012 Atomic orbital electron populations 1.21759 0.96879 1.00424 1.01407 1.21443 0.94746 0.98350 1.01256 1.22319 0.99908 0.94599 1.01443 1.20881 0.88824 0.83709 1.02465 1.44735 1.73138 1.12517 0.99120 1.18917 1.37475 0.95709 0.88952 0.91319 1.25161 0.95263 0.97845 0.99125 1.70189 1.30840 1.16696 1.31297 0.86403 0.78315 0.77911 0.84712 1.21160 1.21359 1.20090 1.18010 0.76713 0.77045 0.85149 1.93009 1.46929 1.96404 1.82914 1.92928 1.90325 1.38749 1.94418 1.22194 0.97390 0.94207 0.91393 1.66915 1.01977 1.04524 1.35609 1.21649 0.95183 0.93653 0.89670 1.98391 1.70448 1.45693 1.85817 1.21863 1.01664 0.98874 0.94563 1.21343 0.94516 0.94607 0.99988 1.20983 0.97670 0.98605 0.94513 1.20893 0.99060 0.95528 1.01871 0.93671 0.93260 0.93017 0.92343 0.92991 0.93163 0.92267 0.88204 0.95244 0.93522 0.84061 0.83976 0.90228 0.90339 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.77 16 2 C -0.12 -2.06 5.93 -26.73 -0.16 -2.22 16 3 C -0.14 -2.94 5.38 -26.73 -0.14 -3.09 16 4 C 0.17 3.94 4.66 -4.04 -0.02 3.92 16 5 N -0.57 -14.46 2.17 -172.92 -0.38 -14.84 16 6 C -0.28 -7.75 8.88 -15.06 -0.13 -7.88 16 7 H 0.07 1.93 7.51 -52.48 -0.39 1.53 16 8 C 0.03 0.81 4.85 -17.43 -0.08 0.73 16 9 N -0.85 -23.79 11.58 55.49 0.64 -23.14 16 10 Si 0.90 21.42 29.62 -169.99 -5.03 16.38 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 14 C 0.56 12.68 1.83 -5.19 -0.01 12.67 16 15 F -0.21 -4.44 13.98 2.25 0.03 -4.41 16 16 F -0.18 -4.28 14.54 2.25 0.03 -4.25 16 17 C 0.09 1.91 5.81 -82.60 -0.48 1.43 16 18 N -0.38 -8.43 7.98 -6.62 -0.05 -8.49 16 19 C 0.16 3.04 7.27 -17.44 -0.13 2.91 16 20 Cl -0.03 -0.56 29.11 -51.86 -1.51 -2.07 16 21 C -0.15 -2.12 9.88 -39.40 -0.39 -2.51 16 22 C -0.08 -1.05 9.86 -39.28 -0.39 -1.44 16 23 C -0.11 -1.88 5.86 -104.48 -0.61 -2.49 16 24 C -0.12 -1.57 8.73 36.01 0.31 -1.25 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.05 1.03 6.74 -51.93 -0.35 0.68 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.10 2.65 5.54 -51.93 -0.29 2.36 16 33 H 0.03 0.70 6.54 -51.93 -0.34 0.36 16 34 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.20 5.79 -51.93 -0.30 0.90 16 39 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -29.76 340.78 -8.02 -37.78 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -5.03 Total: -1.12 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -1.86 Total: -0.99 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.21 Total: -46.47 kcal Atomic # 9 Polarization: -8.72 SS G_CDS: 0.06 Total: -8.66 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.38 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.51 Total: -2.07 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.76 -8.02 -37.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165159497.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.608 kcal (2) G-P(sol) polarization free energy of solvation -29.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds