Wall clock time and date at job start Tue Mar 31 2020 12:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46988 * 2 1 4 4 C 1.53001 * 109.46813 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46740 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00360 * 264.54212 * 5 4 3 7 7 H 1.08003 * 119.99995 * 144.53206 * 6 5 4 8 8 C 1.38807 * 119.99926 * 324.54255 * 6 5 4 9 9 N 1.31622 * 120.00374 * 335.98421 * 8 6 5 10 10 Si 1.86807 * 120.00094 * 155.99333 * 8 6 5 11 11 H 1.48489 * 109.47401 * 89.99303 * 10 8 6 12 12 H 1.48502 * 109.47152 * 210.00040 * 10 8 6 13 13 H 1.48506 * 109.46783 * 329.99108 * 10 8 6 14 14 C 1.46501 * 119.99669 * 84.55237 * 5 4 3 15 15 F 1.39901 * 109.46904 * 302.74787 * 14 5 4 16 16 F 1.39898 * 109.46956 * 182.75000 * 14 5 4 17 17 C 1.50703 * 109.47620 * 62.74625 * 14 5 4 18 18 N 1.31902 * 119.60525 * 8.09036 * 17 14 5 19 19 C 1.31955 * 121.70583 * 180.02562 * 18 17 14 20 20 Cl 1.73599 * 119.63502 * 179.97438 * 19 18 17 21 21 C 1.38390 * 120.72986 * 0.02562 * 19 18 17 22 22 C 1.38568 * 119.14910 * 359.72747 * 21 19 18 23 23 C 1.38136 * 119.61039 * 188.11012 * 17 14 5 24 24 C 1.50709 * 120.40278 * 359.97438 * 23 17 14 25 25 H 1.08998 * 109.46905 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46977 * 300.00139 * 1 2 3 27 27 H 1.08998 * 109.47286 * 59.99597 * 1 2 3 28 28 H 1.08998 * 109.46610 * 240.00037 * 2 1 3 29 29 H 1.08994 * 109.46869 * 120.00136 * 2 1 3 30 30 H 1.08997 * 109.47192 * 59.99780 * 3 2 1 31 31 H 1.09004 * 109.47014 * 300.00195 * 3 2 1 32 32 H 1.08993 * 109.47429 * 60.00468 * 4 3 2 33 33 H 1.08992 * 109.47114 * 299.99278 * 4 3 2 34 34 H 0.96991 * 120.00428 * 180.02562 * 9 8 6 35 35 H 1.08000 * 120.42513 * 179.97438 * 21 19 18 36 36 H 1.08002 * 120.78015 * 180.26893 * 22 21 19 37 37 H 1.08998 * 109.47213 * 90.00150 * 24 23 17 38 38 H 1.08993 * 109.46959 * 330.00049 * 24 23 17 39 39 H 1.09002 * 109.46675 * 209.99728 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.3924 3.4314 -1.1820 7 1 4.2006 4.4852 -1.3202 8 6 4.9773 2.6929 -2.2015 9 7 5.6350 1.5880 -1.9199 10 14 4.8313 3.2671 -3.9731 11 1 5.9732 4.1582 -4.3003 12 1 4.8470 2.0897 -4.8779 13 1 3.5574 4.0098 -4.1493 14 6 4.1894 3.5548 1.2615 15 9 2.9521 3.5844 1.9138 16 9 4.6107 4.8632 1.0013 17 6 5.2031 2.8657 2.1382 18 7 5.9209 1.8734 1.6483 19 6 6.8194 1.2408 2.3790 20 17 7.7339 -0.0586 1.6796 21 6 7.0399 1.6009 3.6969 22 6 6.3075 2.6425 4.2435 23 6 5.3692 3.2803 3.4454 24 6 4.5445 4.4151 3.9962 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9330 0.9289 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 6.0440 1.0722 -2.6322 35 1 7.7761 1.0795 4.2905 36 1 6.4612 2.9483 5.2678 37 1 3.6275 4.0193 4.4326 38 1 4.2950 5.1067 3.1916 39 1 5.1147 4.9398 4.7628 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165159497.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:49 Heat of formation + Delta-G solvation = -62.045047 kcal Electronic energy + Delta-G solvation = -26106.797048 eV Core-core repulsion = 22132.407482 eV Total energy + Delta-G solvation = -3974.389566 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.101 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.80426 -47.86421 -41.33189 -37.85510 -37.54570 -35.32214 -34.56197 -33.72649 -32.58469 -29.76241 -28.57132 -27.13245 -25.62124 -24.13308 -23.17542 -22.30714 -21.74567 -19.37271 -18.79566 -18.38626 -17.86007 -17.33053 -16.66758 -16.29237 -16.07856 -15.74017 -15.67491 -15.06455 -14.73573 -14.69100 -14.36832 -14.30620 -14.28482 -13.91903 -13.76248 -13.64280 -13.30950 -13.13979 -12.97628 -12.84965 -12.66922 -12.44823 -12.38062 -12.16182 -12.13596 -11.88400 -11.77788 -11.58381 -11.29116 -10.88547 -10.59989 -10.33544 -9.83872 -8.87513 -7.90702 -5.52771 -0.24269 0.19556 0.88989 1.43709 1.45985 1.56164 2.28997 2.47666 2.54223 3.10360 3.18347 3.64131 3.70129 3.83566 3.98158 4.08958 4.16023 4.21992 4.32193 4.39477 4.45636 4.61507 4.64512 4.73982 4.82881 4.94506 4.99583 5.08128 5.08858 5.09575 5.13302 5.28291 5.45335 5.48873 5.49737 5.65886 5.81558 6.31732 6.80422 7.01719 7.57537 8.15430 9.08510 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.009784 B = 0.006462 C = 0.005844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.172200 B = 4331.868345 C = 4789.833270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.132 4.132 4 C 0.177 3.823 5 N -0.588 5.588 6 C -0.298 4.298 7 H 0.053 0.947 8 C -0.009 4.009 9 N -0.873 5.873 10 Si 0.956 3.044 11 H -0.285 1.285 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.554 3.446 15 F -0.206 7.206 16 F -0.195 7.195 17 C 0.053 3.947 18 N -0.434 5.434 19 C 0.137 3.863 20 Cl -0.040 7.040 21 C -0.126 4.126 22 C -0.060 4.060 23 C -0.111 4.111 24 C -0.115 4.115 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.022 0.978 34 H 0.252 0.748 35 H 0.184 0.816 36 H 0.200 0.800 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 -1.353 14.689 14.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.171 4.171 4 C 0.053 3.947 5 N -0.313 5.313 6 C -0.427 4.427 7 H 0.071 0.929 8 C -0.211 4.211 9 N -0.512 5.512 10 Si 0.783 3.217 11 H -0.211 1.211 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.429 3.571 15 F -0.188 7.188 16 F -0.176 7.176 17 C -0.088 4.088 18 N -0.143 5.143 19 C -0.029 4.029 20 Cl -0.011 7.011 21 C -0.147 4.147 22 C -0.085 4.085 23 C -0.114 4.114 24 C -0.172 4.172 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.040 0.960 34 H 0.061 0.939 35 H 0.201 0.799 36 H 0.217 0.783 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.744 -1.819 13.637 13.777 hybrid contribution 0.380 0.457 -0.770 0.973 sum -0.364 -1.362 12.867 12.944 Atomic orbital electron populations 1.21703 0.94267 1.02119 1.01740 1.21399 0.96985 0.95727 1.01220 1.22168 0.97675 0.96851 1.00429 1.20685 0.90504 0.83061 1.00477 1.44762 1.74005 1.12781 0.99735 1.18942 1.37698 0.95260 0.90763 0.92878 1.25767 0.95085 0.98111 1.02118 1.70317 1.31475 1.17556 1.31849 0.85507 0.78093 0.77431 0.80651 1.21128 1.20958 1.19816 1.18060 0.77525 0.76469 0.85076 1.92993 1.46891 1.96373 1.82533 1.92894 1.90452 1.39626 1.94610 1.21711 0.98342 0.95672 0.93107 1.66605 1.03723 1.05923 1.38038 1.22026 0.95528 0.94115 0.91278 1.98377 1.70422 1.46011 1.86306 1.22343 1.01331 0.98280 0.92718 1.21950 0.91994 0.92816 1.01754 1.21304 0.98201 0.98970 0.92900 1.20969 0.99864 0.94370 1.01973 0.91295 0.92545 0.93094 0.93035 0.92400 0.93170 0.94026 0.91245 0.95972 0.93883 0.79882 0.78311 0.89008 0.92846 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.15 16 2 C -0.12 -3.96 5.93 30.60 0.18 -3.78 16 3 C -0.13 -5.57 5.38 30.59 0.16 -5.40 16 4 C 0.18 8.80 4.66 86.38 0.40 9.21 16 5 N -0.59 -31.03 2.17 -701.00 -1.52 -32.55 16 6 C -0.30 -17.08 8.88 84.03 0.75 -16.33 16 7 H 0.05 3.13 7.51 -2.91 -0.02 3.11 16 8 C -0.01 -0.51 4.85 84.86 0.41 -0.10 16 9 N -0.87 -50.69 11.58 21.65 0.25 -50.44 16 10 Si 0.96 45.38 29.62 68.60 2.03 47.41 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 14 C 0.55 25.96 1.83 85.63 0.16 26.11 16 15 F -0.21 -8.85 13.98 44.97 0.63 -8.22 16 16 F -0.19 -9.45 14.54 44.97 0.65 -8.79 16 17 C 0.05 2.23 5.81 42.53 0.25 2.48 16 18 N -0.43 -19.46 7.98 -174.86 -1.40 -20.86 16 19 C 0.14 4.94 7.27 84.71 0.62 5.56 16 20 Cl -0.04 -1.38 29.11 -2.72 -0.08 -1.46 16 21 C -0.13 -3.15 9.88 22.38 0.22 -2.93 16 22 C -0.06 -1.31 9.86 22.46 0.22 -1.09 16 23 C -0.11 -3.36 5.86 -19.77 -0.12 -3.48 16 24 C -0.11 -2.77 8.73 71.24 0.62 -2.15 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 2.09 6.74 -2.39 -0.02 2.07 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 3.88 5.54 -2.39 -0.01 3.87 16 33 H 0.02 1.11 6.54 -2.39 -0.02 1.09 16 34 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 35 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.20 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.05 1.58 5.79 -2.39 -0.01 1.56 16 39 H 0.11 1.75 8.09 -2.39 -0.02 1.73 16 Total: -1.00 -69.58 340.78 6.23 -63.35 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 1.07 Total: 6.60 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 4.59 Total: 4.95 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -2.67 Total: -103.84 kcal Atomic # 9 Polarization: -18.30 SS G_CDS: 1.28 Total: -17.02 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -69.58 6.23 -63.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165159497.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.305 kcal (2) G-P(sol) polarization free energy of solvation -69.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds