Wall clock time and date at job start Tue Mar 31 2020 12:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47252 * 2 1 4 4 C 1.52993 * 109.47272 * 179.97438 * 3 2 1 5 5 N 1.46509 * 109.47304 * 179.97438 * 4 3 2 6 6 C 1.36942 * 119.99635 * 270.00203 * 5 4 3 7 7 H 1.07996 * 119.99710 * 141.99202 * 6 5 4 8 8 C 1.38811 * 119.99918 * 321.99216 * 6 5 4 9 9 N 1.31617 * 119.99479 * 158.51730 * 8 6 5 10 10 Si 1.86793 * 120.00170 * 338.51187 * 8 6 5 11 11 H 1.48501 * 109.47205 * 94.66986 * 10 8 6 12 12 H 1.48506 * 109.47330 * 214.66897 * 10 8 6 13 13 H 1.48506 * 109.47369 * 334.67024 * 10 8 6 14 14 C 1.46497 * 119.99872 * 89.99968 * 5 4 3 15 15 F 1.39899 * 109.47008 * 64.15107 * 14 5 4 16 16 F 1.39899 * 109.47020 * 304.14805 * 14 5 4 17 17 C 1.50694 * 109.46707 * 184.14749 * 14 5 4 18 18 C 1.38716 * 120.78179 * 243.38517 * 17 14 5 19 19 C 1.38151 * 119.19412 * 179.97438 * 18 17 14 20 20 C 1.50703 * 119.60596 * 179.97438 * 19 18 17 21 21 N 1.31903 * 120.78376 * 359.97438 * 19 18 17 22 22 C 1.31950 * 121.70478 * 359.76944 * 21 19 18 23 23 Cl 1.73606 * 119.63452 * 180.24090 * 22 21 19 24 24 C 1.38396 * 120.73328 * 0.49993 * 22 21 19 25 25 H 1.09003 * 109.47047 * 299.99874 * 1 2 3 26 26 H 1.08995 * 109.46858 * 60.00049 * 1 2 3 27 27 H 1.08994 * 109.47072 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47180 * 239.99539 * 2 1 3 29 29 H 1.09007 * 109.46583 * 119.99789 * 2 1 3 30 30 H 1.09003 * 109.47376 * 59.99714 * 3 2 1 31 31 H 1.09006 * 109.46981 * 300.00202 * 3 2 1 32 32 H 1.09003 * 109.47322 * 60.00384 * 4 3 2 33 33 H 1.08997 * 109.47539 * 299.99882 * 4 3 2 34 34 H 0.97001 * 119.99538 * 179.97438 * 9 8 6 35 35 H 1.07994 * 120.40319 * 359.95853 * 18 17 14 36 36 H 1.09001 * 109.47115 * 89.99755 * 20 19 18 37 37 H 1.08997 * 109.46712 * 209.99745 * 20 19 18 38 38 H 1.08997 * 109.46966 * 330.00039 * 20 19 18 39 39 H 1.08002 * 120.43020 * 179.77195 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2871 3.4685 -1.1863 7 1 4.0469 4.5167 -1.2861 8 6 4.8276 2.7748 -2.2603 9 7 4.6656 3.2284 -3.4852 10 14 5.7849 1.1979 -1.9671 11 1 4.8772 0.0324 -2.1187 12 1 6.8885 1.0976 -2.9558 13 1 6.3501 1.2098 -0.5939 14 6 4.3020 3.5151 1.2684 15 9 5.3326 2.8700 1.9606 16 9 3.1365 3.4947 2.0420 17 6 4.6981 4.9429 0.9942 18 6 5.9534 5.4126 1.3517 19 6 6.2822 6.7275 1.0842 20 6 7.6432 7.2477 1.4692 21 7 5.4191 7.5330 0.4960 22 6 4.2183 7.1199 0.1374 23 17 3.1270 8.2244 -0.6393 24 6 3.8172 5.8175 0.3783 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9285 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 5.0437 2.7439 -4.2357 35 1 6.6649 4.7585 1.8335 36 1 8.3377 7.0946 0.6431 37 1 7.5750 8.3121 1.6940 38 1 8.0012 6.7127 2.3487 39 1 2.8319 5.4856 0.0860 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165159754.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:55 Heat of formation + Delta-G solvation = -52.928953 kcal Electronic energy + Delta-G solvation = -25682.994376 eV Core-core repulsion = 21709.000113 eV Total energy + Delta-G solvation = -3973.994262 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.101 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -48.26770 -46.36721 -40.09454 -36.62645 -36.38191 -34.33846 -32.88996 -32.15342 -31.60349 -28.45657 -27.58791 -25.87089 -24.20900 -22.83116 -22.18275 -20.67422 -20.51557 -17.74170 -17.25238 -16.80241 -16.44276 -15.85905 -15.54383 -15.11158 -14.85979 -14.65253 -14.48361 -13.60642 -13.39601 -13.14683 -13.07376 -12.91260 -12.83689 -12.71751 -12.65985 -12.33738 -12.14446 -11.77374 -11.71227 -11.48870 -11.38184 -11.22223 -11.03379 -10.99319 -10.65187 -10.51978 -10.30976 -10.00402 -9.69785 -9.46448 -9.37953 -8.83141 -8.50556 -7.55350 -6.26829 -3.84097 1.18909 1.27510 2.05533 3.14299 3.31528 3.38146 3.69309 3.83672 4.27539 4.43594 4.57054 4.87607 5.03995 5.13718 5.25027 5.29909 5.36278 5.39851 5.52927 5.56450 5.62265 5.67369 5.80294 5.88021 5.96571 6.11326 6.11945 6.17909 6.23137 6.24300 6.37682 6.45248 6.54198 6.68351 6.81243 6.98127 7.61655 7.93098 7.95513 8.52239 9.32737 9.58994 10.84202 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.005504 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.110612 B = 5086.443743 C = 5364.544804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.134 4.134 4 C 0.133 3.867 5 N -0.603 5.603 6 C -0.301 4.301 7 H 0.097 0.903 8 C 0.059 3.941 9 N -0.877 5.877 10 Si 0.872 3.128 11 H -0.279 1.279 12 H -0.296 1.296 13 H -0.263 1.263 14 C 0.543 3.457 15 F -0.215 7.215 16 F -0.203 7.203 17 C -0.043 4.043 18 C -0.137 4.137 19 C 0.136 3.864 20 C -0.098 4.098 21 N -0.473 5.473 22 C 0.174 3.826 23 Cl -0.034 7.034 24 C -0.093 4.093 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.270 0.730 35 H 0.146 0.854 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.721 2.041 9.147 9.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.173 4.173 4 C 0.009 3.991 5 N -0.331 5.331 6 C -0.427 4.427 7 H 0.115 0.885 8 C -0.145 4.145 9 N -0.514 5.514 10 Si 0.701 3.299 11 H -0.206 1.206 12 H -0.223 1.223 13 H -0.188 1.188 14 C 0.420 3.580 15 F -0.196 7.196 16 F -0.185 7.185 17 C -0.053 4.053 18 C -0.157 4.157 19 C -0.002 4.002 20 C -0.156 4.156 21 N -0.186 5.186 22 C 0.010 3.990 23 Cl -0.006 7.006 24 C -0.114 4.114 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.164 0.836 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.546 2.977 8.751 9.260 hybrid contribution 0.206 -1.844 0.040 1.856 sum -0.340 1.133 8.791 8.871 Atomic orbital electron populations 1.21737 0.96264 1.00749 1.01741 1.21504 0.95533 0.97910 1.01338 1.22089 0.97052 0.95372 1.02780 1.21309 0.93111 0.84561 1.00075 1.45188 1.74488 1.12859 1.00533 1.18854 1.40420 0.97958 0.85503 0.88548 1.25398 0.96096 0.97999 0.95034 1.69817 1.43235 1.40404 0.97990 0.87028 0.80390 0.83830 0.78666 1.20636 1.22317 1.18772 1.18470 0.73254 0.86552 0.79736 1.93009 1.60755 1.83941 1.81933 1.93011 1.50993 1.97022 1.77478 1.20089 0.94718 0.93438 0.97033 1.21821 0.96373 0.96608 1.00903 1.20973 0.95393 0.89524 0.94314 1.20686 0.90755 1.02170 1.01956 1.66715 1.01793 1.38705 1.11357 1.21314 0.90610 0.89027 0.98051 1.98383 1.59828 1.63678 1.78678 1.21479 1.02110 0.91025 0.96770 0.92999 0.92728 0.93445 0.92375 0.92673 0.92118 0.90981 0.91881 0.93648 0.92022 0.83613 0.90094 0.90420 0.90490 0.82996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.91 5.93 -26.73 -0.16 -2.07 16 3 C -0.13 -2.46 5.45 -26.74 -0.15 -2.60 16 4 C 0.13 2.79 4.35 -4.04 -0.02 2.78 16 5 N -0.60 -13.69 2.35 -172.93 -0.41 -14.10 16 6 C -0.30 -7.69 8.74 -15.06 -0.13 -7.82 16 7 H 0.10 2.59 5.12 -52.49 -0.27 2.32 16 8 C 0.06 1.59 5.31 -17.43 -0.09 1.50 16 9 N -0.88 -24.92 13.97 55.49 0.78 -24.15 16 10 Si 0.87 21.00 25.03 -169.99 -4.25 16.75 16 11 H -0.28 -6.47 6.65 56.52 0.38 -6.09 16 12 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 14 C 0.54 11.21 2.37 -5.20 -0.01 11.19 16 15 F -0.21 -4.37 15.85 2.25 0.04 -4.34 16 16 F -0.20 -4.00 15.85 2.25 0.04 -3.96 16 17 C -0.04 -0.84 4.23 -104.33 -0.44 -1.28 16 18 C -0.14 -2.36 9.13 -39.44 -0.36 -2.72 16 19 C 0.14 2.20 6.78 -82.59 -0.56 1.64 16 20 C -0.10 -1.14 10.17 36.01 0.37 -0.77 16 21 N -0.47 -8.47 10.25 -6.61 -0.07 -8.54 16 22 C 0.17 3.19 7.27 -17.44 -0.13 3.06 16 23 Cl -0.03 -0.56 29.11 -51.86 -1.51 -2.07 16 24 C -0.09 -1.77 6.91 -39.40 -0.27 -2.05 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 30 H 0.06 1.09 7.11 -51.93 -0.37 0.73 16 31 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.06 1.42 3.24 -51.93 -0.17 1.25 16 33 H 0.05 0.90 7.96 -51.93 -0.41 0.48 16 34 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.15 2.24 7.27 -52.49 -0.38 1.86 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 39 H 0.15 2.91 7.88 -52.49 -0.41 2.50 16 LS Contribution 339.94 15.07 5.12 5.12 Total: -1.00 -28.26 339.94 -6.83 -35.08 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.98 Total: 0.90 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -1.58 Total: -0.70 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.30 Total: -46.78 kcal Atomic # 9 Polarization: -8.37 SS G_CDS: 0.07 Total: -8.30 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.25 Total: 16.75 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.51 Total: -2.07 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.26 -6.83 -35.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165159754.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.844 kcal (2) G-P(sol) polarization free energy of solvation -28.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds