Wall clock time and date at job start Tue Mar 31 2020 12:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47252 * 2 1 4 4 C 1.52993 * 109.47272 * 179.97438 * 3 2 1 5 5 N 1.46509 * 109.47304 * 179.97438 * 4 3 2 6 6 C 1.36942 * 119.99635 * 270.00203 * 5 4 3 7 7 H 1.07996 * 119.99710 * 141.99202 * 6 5 4 8 8 C 1.38811 * 119.99918 * 321.99216 * 6 5 4 9 9 N 1.31617 * 119.99479 * 158.51730 * 8 6 5 10 10 Si 1.86793 * 120.00170 * 338.51187 * 8 6 5 11 11 H 1.48501 * 109.47205 * 94.66986 * 10 8 6 12 12 H 1.48506 * 109.47330 * 214.66897 * 10 8 6 13 13 H 1.48506 * 109.47369 * 334.67024 * 10 8 6 14 14 C 1.46497 * 119.99872 * 89.99968 * 5 4 3 15 15 F 1.39899 * 109.47008 * 64.15107 * 14 5 4 16 16 F 1.39899 * 109.47020 * 304.14805 * 14 5 4 17 17 C 1.50694 * 109.46707 * 184.14749 * 14 5 4 18 18 C 1.38716 * 120.78179 * 243.38517 * 17 14 5 19 19 C 1.38151 * 119.19412 * 179.97438 * 18 17 14 20 20 C 1.50703 * 119.60596 * 179.97438 * 19 18 17 21 21 N 1.31903 * 120.78376 * 359.97438 * 19 18 17 22 22 C 1.31950 * 121.70478 * 359.76944 * 21 19 18 23 23 Cl 1.73606 * 119.63452 * 180.24090 * 22 21 19 24 24 C 1.38396 * 120.73328 * 0.49993 * 22 21 19 25 25 H 1.09003 * 109.47047 * 299.99874 * 1 2 3 26 26 H 1.08995 * 109.46858 * 60.00049 * 1 2 3 27 27 H 1.08994 * 109.47072 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47180 * 239.99539 * 2 1 3 29 29 H 1.09007 * 109.46583 * 119.99789 * 2 1 3 30 30 H 1.09003 * 109.47376 * 59.99714 * 3 2 1 31 31 H 1.09006 * 109.46981 * 300.00202 * 3 2 1 32 32 H 1.09003 * 109.47322 * 60.00384 * 4 3 2 33 33 H 1.08997 * 109.47539 * 299.99882 * 4 3 2 34 34 H 0.97001 * 119.99538 * 179.97438 * 9 8 6 35 35 H 1.07994 * 120.40319 * 359.95853 * 18 17 14 36 36 H 1.09001 * 109.47115 * 89.99755 * 20 19 18 37 37 H 1.08997 * 109.46712 * 209.99745 * 20 19 18 38 38 H 1.08997 * 109.46966 * 330.00039 * 20 19 18 39 39 H 1.08002 * 120.43020 * 179.77195 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2871 3.4685 -1.1863 7 1 4.0469 4.5167 -1.2861 8 6 4.8276 2.7748 -2.2603 9 7 4.6656 3.2284 -3.4852 10 14 5.7849 1.1979 -1.9671 11 1 4.8772 0.0324 -2.1187 12 1 6.8885 1.0976 -2.9558 13 1 6.3501 1.2098 -0.5939 14 6 4.3020 3.5151 1.2684 15 9 5.3326 2.8700 1.9606 16 9 3.1365 3.4947 2.0420 17 6 4.6981 4.9429 0.9942 18 6 5.9534 5.4126 1.3517 19 6 6.2822 6.7275 1.0842 20 6 7.6432 7.2477 1.4692 21 7 5.4191 7.5330 0.4960 22 6 4.2183 7.1199 0.1374 23 17 3.1270 8.2244 -0.6393 24 6 3.8172 5.8175 0.3783 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9285 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 5.0437 2.7439 -4.2357 35 1 6.6649 4.7585 1.8335 36 1 8.3377 7.0946 0.6431 37 1 7.5750 8.3121 1.6940 38 1 8.0012 6.7127 2.3487 39 1 2.8319 5.4856 0.0860 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165159754.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:52 Heat of formation + Delta-G solvation = -67.728430 kcal Electronic energy + Delta-G solvation = -25683.636129 eV Core-core repulsion = 21709.000113 eV Total energy + Delta-G solvation = -3974.636016 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.101 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -49.90519 -48.00023 -41.46941 -38.30598 -37.74863 -35.75419 -34.43178 -33.57767 -33.29938 -29.91046 -28.79914 -27.57892 -25.79828 -24.21667 -23.69309 -22.14284 -22.01898 -19.41571 -18.80433 -18.45411 -18.21472 -17.42981 -16.98845 -16.66411 -16.36962 -16.14269 -15.80179 -15.06229 -14.88235 -14.76370 -14.64309 -14.53809 -14.43777 -14.28618 -13.84970 -13.65440 -13.31105 -13.23005 -13.16084 -13.01533 -12.86377 -12.79774 -12.49400 -12.35637 -12.11130 -12.03341 -11.82535 -11.64058 -11.35230 -10.94762 -10.82797 -10.74665 -9.87628 -9.42559 -8.31387 -5.86839 -0.22360 -0.12633 0.67834 1.22947 1.35933 1.45420 2.13059 2.30138 2.40027 2.82215 2.98308 3.27017 3.39991 3.69878 3.85806 3.91327 4.01033 4.10003 4.25083 4.31078 4.35916 4.39361 4.44847 4.59400 4.80774 4.83395 4.91072 4.93297 4.97267 5.01830 5.06453 5.09864 5.31497 5.39910 5.43745 5.50219 5.74120 5.97366 6.57294 6.58010 7.30938 7.63657 8.82912 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.005504 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.110612 B = 5086.443743 C = 5364.544804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.124 4.124 4 C 0.124 3.876 5 N -0.614 5.614 6 C -0.282 4.282 7 H 0.078 0.922 8 C 0.013 3.987 9 N -0.922 5.922 10 Si 0.922 3.078 11 H -0.267 1.267 12 H -0.303 1.303 13 H -0.262 1.262 14 C 0.547 3.453 15 F -0.210 7.210 16 F -0.199 7.199 17 C -0.064 4.064 18 C -0.139 4.139 19 C 0.140 3.860 20 C -0.096 4.096 21 N -0.484 5.484 22 C 0.164 3.836 23 Cl -0.023 7.023 24 C -0.107 4.107 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.269 0.731 35 H 0.166 0.834 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.039 1.408 10.889 10.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.163 4.163 4 C 0.002 3.998 5 N -0.342 5.342 6 C -0.410 4.410 7 H 0.095 0.905 8 C -0.188 4.188 9 N -0.562 5.562 10 Si 0.750 3.250 11 H -0.194 1.194 12 H -0.231 1.231 13 H -0.186 1.186 14 C 0.424 3.576 15 F -0.192 7.192 16 F -0.180 7.180 17 C -0.074 4.074 18 C -0.159 4.159 19 C 0.001 3.999 20 C -0.153 4.153 21 N -0.196 5.196 22 C 0.001 3.999 23 Cl 0.005 6.995 24 C -0.128 4.128 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.184 0.816 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.196 2.332 10.523 10.780 hybrid contribution -0.053 -1.566 -0.413 1.620 sum 0.143 0.766 10.111 10.141 Atomic orbital electron populations 1.21708 0.94484 1.02191 1.01771 1.21495 0.97113 0.95534 1.01868 1.21962 0.95282 0.97469 1.01601 1.21458 0.94726 0.83684 0.99982 1.45250 1.74994 1.13388 1.00591 1.18760 1.38534 0.97224 0.86435 0.90467 1.25880 0.97316 1.00738 0.94833 1.69914 1.45292 1.42284 0.98754 0.86213 0.79130 0.81558 0.78091 1.19378 1.23072 1.18603 1.18296 0.73383 0.86989 0.78973 1.93001 1.60517 1.83996 1.81645 1.93014 1.50792 1.97034 1.77180 1.20173 0.96000 0.92866 0.98332 1.22136 0.95735 0.97481 1.00598 1.21758 0.96662 0.89034 0.92405 1.20860 0.87954 1.03110 1.03391 1.66869 1.01758 1.39163 1.11855 1.21450 0.91170 0.89099 0.98143 1.98377 1.59551 1.63108 1.78435 1.21395 1.01900 0.91686 0.97869 0.92333 0.93401 0.91302 0.92905 0.91060 0.91876 0.93483 0.93338 0.92137 0.92180 0.81603 0.89141 0.89336 0.87626 0.84112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.91 71.98 0.71 -2.78 16 2 C -0.12 -3.52 5.93 30.59 0.18 -3.34 16 3 C -0.12 -4.47 5.45 30.59 0.17 -4.30 16 4 C 0.12 5.11 4.35 86.38 0.38 5.48 16 5 N -0.61 -27.65 2.35 -701.01 -1.65 -29.30 16 6 C -0.28 -14.59 8.74 84.03 0.73 -13.86 16 7 H 0.08 4.28 5.12 -2.91 -0.01 4.26 16 8 C 0.01 0.69 5.31 84.86 0.45 1.14 16 9 N -0.92 -53.65 13.97 21.65 0.30 -53.35 16 10 Si 0.92 43.35 25.03 68.60 1.72 45.06 16 11 H -0.27 -11.90 6.65 99.48 0.66 -11.24 16 12 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 13 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 14 C 0.55 22.07 2.37 85.63 0.20 22.27 16 15 F -0.21 -8.15 15.85 44.97 0.71 -7.44 16 16 F -0.20 -7.64 15.85 44.97 0.71 -6.93 16 17 C -0.06 -2.46 4.23 -19.67 -0.08 -2.54 16 18 C -0.14 -4.57 9.13 22.36 0.20 -4.37 16 19 C 0.14 4.25 6.78 42.53 0.29 4.54 16 20 C -0.10 -1.92 10.17 71.24 0.72 -1.19 16 21 N -0.48 -16.83 10.25 -174.84 -1.79 -18.62 16 22 C 0.16 6.04 7.27 84.71 0.62 6.66 16 23 Cl -0.02 -0.76 29.11 -2.72 -0.08 -0.84 16 24 C -0.11 -4.16 6.91 22.39 0.15 -4.00 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.06 2.22 7.11 -2.39 -0.02 2.20 16 31 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.05 2.14 3.24 -2.39 -0.01 2.14 16 33 H 0.06 2.28 7.96 -2.39 -0.02 2.26 16 34 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.17 4.65 7.27 -2.91 -0.02 4.63 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.11 1.52 8.08 -2.39 -0.02 1.50 16 39 H 0.14 5.62 7.88 -2.91 -0.02 5.60 16 Total: -1.00 -60.61 339.94 5.69 -54.93 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 1.03 Total: 12.78 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 4.73 Total: 3.71 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -3.14 Total: -101.27 kcal Atomic # 9 Polarization: -15.79 SS G_CDS: 1.43 Total: -14.36 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.72 Total: 45.06 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.84 kcal Total: -60.61 5.69 -54.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165159754.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.801 kcal (2) G-P(sol) polarization free energy of solvation -60.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds