Wall clock time and date at job start Tue Mar 31 2020 12:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.46727 * 2 1 4 4 C 1.34648 * 116.99613 * 180.02562 * 3 2 1 5 5 O 1.21392 * 119.99899 * 0.02562 * 4 3 2 6 6 C 1.48366 * 119.99758 * 180.02562 * 4 3 2 7 7 N 1.30687 * 126.41063 * 359.97438 * 6 4 3 8 8 O 1.21292 * 110.10714 * 180.02562 * 7 6 4 9 9 C 1.33696 * 110.01843 * 0.02562 * 8 7 6 10 10 C 1.50705 * 126.44311 * 180.02562 * 9 8 7 11 11 N 1.46505 * 109.46586 * 270.02215 * 10 9 8 12 12 C 1.38083 * 119.99384 * 180.02562 * 11 10 9 13 13 N 1.32263 * 119.91162 * 359.97438 * 12 11 10 14 14 C 1.31976 * 121.86984 * 179.97438 * 13 12 11 15 15 C 1.38682 * 121.44309 * 0.04680 * 14 13 12 16 16 C 1.38004 * 119.62882 * 359.97438 * 15 14 13 17 17 C 1.41002 * 118.28519 * 359.97438 * 16 15 14 18 18 C 1.41015 * 120.70829 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00280 * 154.87215 * 18 17 16 20 20 C 1.39957 * 119.99759 * 334.86973 * 18 17 16 21 21 N 1.30868 * 120.00079 * 343.95892 * 20 18 17 22 22 Si 1.86799 * 119.99534 * 163.95815 * 20 18 17 23 23 H 1.48496 * 109.47066 * 90.00166 * 22 20 18 24 24 H 1.48510 * 109.46948 * 209.99859 * 22 20 18 25 25 H 1.48494 * 109.47408 * 329.99973 * 22 20 18 26 26 N 1.30930 * 107.11298 * 0.25649 * 9 8 7 27 27 H 1.08998 * 109.47196 * 60.00198 * 1 2 3 28 28 H 1.08995 * 109.47137 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47138 * 299.99874 * 1 2 3 30 30 H 1.08998 * 109.47463 * 240.00516 * 2 1 3 31 31 H 1.08998 * 109.47196 * 119.99802 * 2 1 3 32 32 H 1.08995 * 109.47030 * 150.02072 * 10 9 8 33 33 H 1.08997 * 109.47193 * 30.01509 * 10 9 8 34 34 H 0.97000 * 119.99788 * 359.97438 * 11 10 9 35 35 H 1.07993 * 119.27744 * 180.02562 * 14 13 12 36 36 H 1.07998 * 120.17708 * 180.25167 * 15 14 13 37 37 H 1.08000 * 120.85926 * 180.02562 * 16 15 14 38 38 H 0.97001 * 119.99545 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0882 0.5827 -0.0015 6 6 3.9158 2.9165 0.0000 7 7 3.2404 4.0353 0.0005 8 8 3.9999 4.9809 0.0004 9 6 5.2659 4.5511 -0.0009 10 6 6.5034 5.4112 -0.0009 11 7 6.9030 5.6916 -1.3822 12 6 8.0179 6.4663 -1.6346 13 7 8.7232 6.9547 -0.6279 14 6 9.7952 7.6990 -0.8246 15 6 10.2368 8.0081 -2.1024 16 6 9.5458 7.5303 -3.1973 17 6 8.4031 6.7356 -2.9715 18 6 7.6592 6.2202 -4.0530 19 1 7.0682 5.3255 -3.9243 20 6 7.6867 6.8684 -5.2931 21 7 8.1299 8.0966 -5.3798 22 14 7.0908 5.9800 -6.8245 23 1 5.6380 6.2277 -7.0066 24 1 7.8312 6.4843 -8.0090 25 1 7.3296 4.5220 -6.6755 26 7 5.2284 3.2423 -0.0070 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 7.3101 4.8872 0.5116 33 1 6.2942 6.3488 0.5141 34 1 6.3849 5.3323 -2.1194 35 1 10.3402 8.0758 0.0281 36 1 11.1190 8.6156 -2.2398 37 1 9.8723 7.7584 -4.2012 38 1 8.1486 8.5459 -6.2394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171233202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:26 Heat of formation + Delta-G solvation = 28.494696 kcal Electronic energy + Delta-G solvation = -25145.494711 eV Core-core repulsion = 21185.011265 eV Total energy + Delta-G solvation = -3960.483446 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.96550 -40.75023 -38.62612 -37.19765 -36.14548 -35.24287 -34.04872 -32.87752 -32.00020 -30.49968 -29.41230 -26.71994 -26.48816 -25.32310 -23.69145 -23.14695 -21.77656 -21.28359 -20.75915 -18.59937 -18.46347 -17.80234 -17.33770 -16.95235 -16.80756 -16.63628 -15.59910 -15.15292 -14.56378 -14.39074 -14.18519 -13.98552 -13.76000 -13.27287 -13.15123 -12.91127 -12.77039 -12.51263 -12.15202 -12.06821 -12.06581 -11.92902 -11.50093 -11.44692 -11.40547 -11.23736 -11.00117 -10.99306 -10.60367 -10.49391 -9.87791 -9.39125 -9.21466 -8.21850 -8.02244 -6.92154 -6.67455 -4.34335 0.44394 1.22202 1.65810 2.46151 2.51101 2.66856 3.00086 3.02978 3.06816 3.16724 3.49121 3.68496 3.86906 4.23720 4.50040 4.50425 4.57567 4.61935 4.83262 5.09027 5.19319 5.35324 5.40539 5.52440 5.60938 5.75711 5.80400 5.85781 5.91183 6.37474 6.65773 6.73102 7.03075 7.06786 7.12457 7.50530 7.70229 7.72564 7.89382 8.10847 8.25363 8.52384 8.69524 8.83558 9.60779 10.11734 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.003141 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.794931 B = 8913.053262 C =10418.930642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.339 6.339 4 C 0.568 3.432 5 O -0.463 6.463 6 C 0.139 3.861 7 N -0.321 5.321 8 O 0.115 5.885 9 C 0.195 3.805 10 C 0.238 3.762 11 N -0.727 5.727 12 C 0.298 3.702 13 N -0.529 5.529 14 C 0.002 3.998 15 C -0.184 4.184 16 C -0.123 4.123 17 C 0.040 3.960 18 C -0.456 4.456 19 H 0.074 0.926 20 C 0.077 3.923 21 N -0.795 5.795 22 Si 0.905 3.095 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.261 1.261 26 N -0.425 5.425 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.408 0.592 35 H 0.121 0.879 36 H 0.096 0.904 37 H 0.127 0.873 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.876 -8.826 7.375 15.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.255 6.255 4 C 0.406 3.594 5 O -0.344 6.344 6 C -0.133 4.133 7 N -0.023 5.023 8 O 0.042 5.958 9 C -0.026 4.026 10 C 0.111 3.889 11 N -0.371 5.371 12 C 0.061 3.939 13 N -0.246 5.246 14 C -0.152 4.152 15 C -0.207 4.207 16 C -0.150 4.150 17 C 0.033 3.967 18 C -0.487 4.487 19 H 0.092 0.908 20 C -0.141 4.141 21 N -0.420 5.420 22 Si 0.729 3.271 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.185 1.185 26 N -0.159 5.159 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.245 0.755 35 H 0.138 0.862 36 H 0.115 0.885 37 H 0.144 0.856 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.607 -9.660 8.240 17.203 hybrid contribution -0.077 -0.216 -1.952 1.965 sum -11.684 -9.875 6.288 16.540 Atomic orbital electron populations 1.21825 0.91903 1.03299 1.03960 1.23243 0.95804 0.78652 1.03326 1.86573 1.21623 1.33583 1.83724 1.18636 0.81404 0.85247 0.74117 1.90914 1.60499 1.39938 1.43083 1.24090 0.87312 0.93601 1.08247 1.75078 1.16966 0.95497 1.14754 1.85400 1.15932 1.31156 1.63357 1.29420 0.88783 0.89491 0.94954 1.19496 0.84898 0.95867 0.88663 1.43431 1.30729 1.59303 1.03658 1.18239 0.89199 0.96866 0.89546 1.66474 1.09001 1.14307 1.34787 1.21347 0.96251 1.02602 0.95029 1.21447 1.01203 1.03728 0.94287 1.21378 0.94350 1.01129 0.98133 1.17866 0.93363 0.95237 0.90222 1.19143 1.25665 1.09751 0.94165 0.90767 1.25806 0.93665 0.94085 1.00516 1.69795 1.35356 1.09839 1.27036 0.86354 0.79335 0.80913 0.80454 1.19539 1.20012 1.18507 1.72109 1.15799 1.10529 1.17455 0.91150 0.89717 0.91208 0.90473 0.90526 0.87775 0.88539 0.75522 0.86188 0.88537 0.85555 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.29 37.16 0.38 -0.51 16 2 C 0.06 0.53 6.19 37.16 0.23 0.76 16 3 O -0.34 -4.11 10.23 -40.35 -0.41 -4.52 16 4 C 0.57 8.24 7.99 34.90 0.28 8.52 16 5 O -0.46 -7.50 16.89 -19.18 -0.32 -7.83 16 6 C 0.14 2.14 8.04 -156.18 -1.26 0.88 16 7 N -0.32 -4.76 12.20 30.93 0.38 -4.39 16 8 O 0.12 1.63 11.29 17.97 0.20 1.83 16 9 C 0.19 2.84 7.86 -13.00 -0.10 2.74 16 10 C 0.24 3.59 6.30 -5.19 -0.03 3.55 16 11 N -0.73 -13.85 5.60 -61.15 -0.34 -14.19 16 12 C 0.30 6.77 7.52 -155.03 -1.17 5.60 16 13 N -0.53 -11.72 9.54 -11.87 -0.11 -11.83 16 14 C 0.00 0.03 11.17 -17.33 -0.19 -0.16 16 15 C -0.18 -4.09 10.08 -39.50 -0.40 -4.49 16 16 C -0.12 -3.04 8.79 -38.62 -0.34 -3.38 16 17 C 0.04 1.00 5.60 -106.47 -0.60 0.40 16 18 C -0.46 -11.19 8.52 -37.89 -0.32 -11.51 16 19 H 0.07 1.73 6.69 -52.49 -0.35 1.38 16 20 C 0.08 1.83 5.20 -17.32 -0.09 1.74 16 21 N -0.79 -19.55 10.93 55.55 0.61 -18.94 16 22 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 16 23 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 26 N -0.42 -6.89 11.57 -9.94 -0.11 -7.00 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.41 7.75 6.67 -40.82 -0.27 7.48 16 35 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 36 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 37 H 0.13 3.21 6.25 -52.49 -0.33 2.88 16 38 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 LS Contribution 343.71 15.07 5.18 5.18 Total: -1.00 -28.56 343.71 -7.46 -36.02 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -3.89 Total: 8.54 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -3.60 Total: 4.15 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.41 Total: -56.36 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.53 Total: -10.52 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.56 -7.46 -36.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171233202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.517 kcal (2) G-P(sol) polarization free energy of solvation -28.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds