Wall clock time and date at job start Tue Mar 31 2020 12:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.46727 * 2 1 4 4 C 1.34648 * 116.99613 * 180.02562 * 3 2 1 5 5 O 1.21392 * 119.99899 * 0.02562 * 4 3 2 6 6 C 1.48366 * 119.99758 * 180.02562 * 4 3 2 7 7 N 1.30687 * 126.41063 * 359.97438 * 6 4 3 8 8 O 1.21292 * 110.10714 * 180.02562 * 7 6 4 9 9 C 1.33696 * 110.01843 * 0.02562 * 8 7 6 10 10 C 1.50705 * 126.44311 * 180.02562 * 9 8 7 11 11 N 1.46505 * 109.46586 * 270.02215 * 10 9 8 12 12 C 1.38083 * 119.99384 * 180.02562 * 11 10 9 13 13 N 1.32263 * 119.91162 * 359.97438 * 12 11 10 14 14 C 1.31976 * 121.86984 * 179.97438 * 13 12 11 15 15 C 1.38682 * 121.44309 * 0.04680 * 14 13 12 16 16 C 1.38004 * 119.62882 * 359.97438 * 15 14 13 17 17 C 1.41002 * 118.28519 * 359.97438 * 16 15 14 18 18 C 1.41015 * 120.70829 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00280 * 154.87215 * 18 17 16 20 20 C 1.39957 * 119.99759 * 334.86973 * 18 17 16 21 21 N 1.30868 * 120.00079 * 343.95892 * 20 18 17 22 22 Si 1.86799 * 119.99534 * 163.95815 * 20 18 17 23 23 H 1.48496 * 109.47066 * 90.00166 * 22 20 18 24 24 H 1.48510 * 109.46948 * 209.99859 * 22 20 18 25 25 H 1.48494 * 109.47408 * 329.99973 * 22 20 18 26 26 N 1.30930 * 107.11298 * 0.25649 * 9 8 7 27 27 H 1.08998 * 109.47196 * 60.00198 * 1 2 3 28 28 H 1.08995 * 109.47137 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47138 * 299.99874 * 1 2 3 30 30 H 1.08998 * 109.47463 * 240.00516 * 2 1 3 31 31 H 1.08998 * 109.47196 * 119.99802 * 2 1 3 32 32 H 1.08995 * 109.47030 * 150.02072 * 10 9 8 33 33 H 1.08997 * 109.47193 * 30.01509 * 10 9 8 34 34 H 0.97000 * 119.99788 * 359.97438 * 11 10 9 35 35 H 1.07993 * 119.27744 * 180.02562 * 14 13 12 36 36 H 1.07998 * 120.17708 * 180.25167 * 15 14 13 37 37 H 1.08000 * 120.85926 * 180.02562 * 16 15 14 38 38 H 0.97001 * 119.99545 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0882 0.5827 -0.0015 6 6 3.9158 2.9165 0.0000 7 7 3.2404 4.0353 0.0005 8 8 3.9999 4.9809 0.0004 9 6 5.2659 4.5511 -0.0009 10 6 6.5034 5.4112 -0.0009 11 7 6.9030 5.6916 -1.3822 12 6 8.0179 6.4663 -1.6346 13 7 8.7232 6.9547 -0.6279 14 6 9.7952 7.6990 -0.8246 15 6 10.2368 8.0081 -2.1024 16 6 9.5458 7.5303 -3.1973 17 6 8.4031 6.7356 -2.9715 18 6 7.6592 6.2202 -4.0530 19 1 7.0682 5.3255 -3.9243 20 6 7.6867 6.8684 -5.2931 21 7 8.1299 8.0966 -5.3798 22 14 7.0908 5.9800 -6.8245 23 1 5.6380 6.2277 -7.0066 24 1 7.8312 6.4843 -8.0090 25 1 7.3296 4.5220 -6.6755 26 7 5.2284 3.2423 -0.0070 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 7.3101 4.8872 0.5116 33 1 6.2942 6.3488 0.5141 34 1 6.3849 5.3323 -2.1194 35 1 10.3402 8.0758 0.0281 36 1 11.1190 8.6156 -2.2398 37 1 9.8723 7.7584 -4.2012 38 1 8.1486 8.5459 -6.2394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171233202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:22 Heat of formation + Delta-G solvation = 10.766292 kcal Electronic energy + Delta-G solvation = -25146.263473 eV Core-core repulsion = 21185.011265 eV Total energy + Delta-G solvation = -3961.252208 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 3.86 seconds Orbital eigenvalues (eV) -47.16671 -41.79726 -40.33696 -38.23545 -37.41639 -36.63289 -35.81920 -34.14377 -32.71181 -32.28419 -30.98762 -28.10112 -27.71691 -27.03519 -24.73578 -24.10071 -23.31633 -22.62944 -22.32049 -19.79865 -19.65414 -19.13801 -18.89798 -18.34935 -17.88031 -17.75614 -17.20757 -16.77934 -15.84171 -15.62576 -15.38904 -15.37403 -15.01516 -14.65612 -14.49723 -14.17775 -13.76119 -13.73961 -13.58978 -13.38596 -13.21109 -13.11732 -13.09511 -12.71025 -12.67590 -12.62590 -12.36789 -12.21128 -11.76446 -11.69493 -11.61527 -11.13627 -10.82208 -9.99471 -9.81030 -8.66725 -8.37377 -6.16372 -0.72815 0.02425 0.64693 0.95039 1.22477 1.25927 1.34487 1.40350 1.48798 1.54415 2.21369 2.32570 2.58642 2.75701 2.85165 3.46424 3.83546 3.88284 3.91085 3.91390 4.18880 4.24876 4.29537 4.51917 4.55476 4.60109 4.69611 4.84900 4.90112 4.92188 5.00361 5.22037 5.23910 5.32680 5.76763 5.93783 6.07136 6.11476 6.34335 6.54754 6.64428 6.75160 6.89727 7.07347 7.86044 8.37789 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.003141 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.794931 B = 8913.053262 C =10418.930642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.340 6.340 4 C 0.572 3.428 5 O -0.486 6.486 6 C 0.129 3.871 7 N -0.319 5.319 8 O 0.125 5.875 9 C 0.206 3.794 10 C 0.243 3.757 11 N -0.726 5.726 12 C 0.299 3.701 13 N -0.532 5.532 14 C 0.006 3.994 15 C -0.193 4.193 16 C -0.146 4.146 17 C 0.005 3.995 18 C -0.481 4.481 19 H 0.076 0.924 20 C 0.039 3.961 21 N -0.827 5.827 22 Si 0.971 3.029 23 H -0.265 1.265 24 H -0.269 1.269 25 H -0.263 1.263 26 N -0.444 5.444 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.406 0.594 35 H 0.156 0.844 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.839 -9.366 8.107 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.255 6.255 4 C 0.411 3.589 5 O -0.370 6.370 6 C -0.142 4.142 7 N -0.020 5.020 8 O 0.050 5.950 9 C -0.015 4.015 10 C 0.117 3.883 11 N -0.368 5.368 12 C 0.061 3.939 13 N -0.249 5.249 14 C -0.148 4.148 15 C -0.215 4.215 16 C -0.173 4.173 17 C -0.002 4.002 18 C -0.512 4.512 19 H 0.095 0.905 20 C -0.176 4.176 21 N -0.453 5.453 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.194 1.194 25 H -0.187 1.187 26 N -0.179 5.179 27 H 0.086 0.914 28 H 0.129 0.871 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.128 0.872 33 H 0.134 0.866 34 H 0.243 0.757 35 H 0.173 0.827 36 H 0.139 0.861 37 H 0.127 0.873 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.610 -10.212 8.997 18.553 hybrid contribution 0.201 -0.045 -2.051 2.061 sum -12.409 -10.257 6.946 17.534 Atomic orbital electron populations 1.21871 0.89651 1.04967 1.03885 1.23667 0.97484 0.76991 1.03932 1.86588 1.20053 1.35919 1.82970 1.18602 0.82075 0.84621 0.73622 1.90895 1.61190 1.40418 1.44469 1.24307 0.87156 0.94259 1.08448 1.75068 1.16951 0.95444 1.14534 1.85399 1.15705 1.30862 1.63001 1.29169 0.88722 0.89005 0.94608 1.19583 0.85197 0.96904 0.86587 1.43463 1.29655 1.58319 1.05379 1.18390 0.89805 0.96549 0.89112 1.66622 1.09361 1.14732 1.34229 1.21976 0.95720 1.01168 0.95904 1.21697 1.01902 1.03956 0.93989 1.21404 0.95239 1.02393 0.98242 1.18201 0.94051 0.96380 0.91561 1.19347 1.26539 1.10237 0.95074 0.90550 1.26533 0.93663 0.94506 1.02894 1.69853 1.36583 1.10992 1.27908 0.85358 0.78921 0.79386 0.77035 1.19013 1.19401 1.18716 1.72096 1.16486 1.11262 1.18039 0.91390 0.87118 0.91078 0.90148 0.89747 0.87172 0.86580 0.75748 0.82698 0.86145 0.87279 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.29 71.98 0.74 -0.67 16 2 C 0.05 0.80 6.19 71.98 0.45 1.25 16 3 O -0.34 -7.93 10.23 -55.57 -0.57 -8.49 16 4 C 0.57 16.31 7.99 70.52 0.56 16.87 16 5 O -0.49 -15.63 16.89 20.18 0.34 -15.29 16 6 C 0.13 3.90 8.04 137.29 1.10 5.01 16 7 N -0.32 -9.13 12.20 -59.34 -0.72 -9.85 16 8 O 0.13 3.37 11.29 74.37 0.84 4.21 16 9 C 0.21 5.76 7.86 88.36 0.69 6.45 16 10 C 0.24 6.96 6.30 85.63 0.54 7.50 16 11 N -0.73 -27.12 5.60 -347.37 -1.95 -29.07 16 12 C 0.30 13.43 7.52 134.06 1.01 14.43 16 13 N -0.53 -22.72 9.54 -191.45 -1.83 -24.54 16 14 C 0.01 0.24 11.17 84.78 0.95 1.19 16 15 C -0.19 -8.41 10.08 22.32 0.22 -8.19 16 16 C -0.15 -7.31 8.79 22.89 0.20 -7.11 16 17 C 0.01 0.25 5.60 -21.06 -0.12 0.13 16 18 C -0.48 -23.99 8.52 23.37 0.20 -23.80 16 19 H 0.08 3.62 6.69 -2.91 -0.02 3.60 16 20 C 0.04 1.86 5.20 85.25 0.44 2.30 16 21 N -0.83 -41.50 10.93 21.83 0.24 -41.26 16 22 Si 0.97 37.21 29.59 68.60 2.03 39.24 16 23 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 24 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 25 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 26 N -0.44 -14.07 11.57 -302.77 -3.50 -17.57 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.41 15.37 6.67 -92.71 -0.62 14.75 16 35 H 0.16 5.20 8.06 -2.91 -0.02 5.17 16 36 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 37 H 0.11 5.74 6.25 -2.91 -0.02 5.72 16 38 H 0.29 13.12 8.30 -92.71 -0.77 12.35 16 Total: -1.00 -61.09 343.71 2.39 -58.71 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.51 Total: 28.56 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 6.99 Total: 15.37 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -7.76 Total: -122.30 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.61 Total: -19.57 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Total: -61.09 2.39 -58.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171233202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.472 kcal (2) G-P(sol) polarization free energy of solvation -61.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.86 seconds