Wall clock time and date at job start Tue Mar 31 2020 12:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45200 * 109.46913 * 2 1 4 4 C 1.34647 * 116.99716 * 179.97438 * 3 2 1 5 5 O 1.21394 * 119.99931 * 0.02562 * 4 3 2 6 6 C 1.48359 * 119.99827 * 180.02562 * 4 3 2 7 7 N 1.30696 * 126.41305 * 359.97438 * 6 4 3 8 8 O 1.21289 * 110.10847 * 180.02562 * 7 6 4 9 9 C 1.33692 * 110.01674 * 359.97438 * 8 7 6 10 10 C 1.50703 * 126.43677 * 179.97438 * 9 8 7 11 11 N 1.46501 * 109.47579 * 270.02253 * 10 9 8 12 12 C 1.39720 * 120.00193 * 180.02562 * 11 10 9 13 13 C 1.39330 * 120.36067 * 0.02562 * 12 11 10 14 14 N 1.31989 * 121.20518 * 179.70142 * 13 12 11 15 15 C 1.31496 * 122.05860 * 0.27475 * 14 13 12 16 16 C 1.40770 * 120.56377 * 0.02562 * 15 14 13 17 17 C 1.41424 * 120.62071 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99844 * 23.47660 * 17 16 15 19 19 C 1.39928 * 119.99682 * 203.47164 * 17 16 15 20 20 N 1.30834 * 120.00210 * 17.55404 * 19 17 16 21 21 Si 1.86800 * 119.99891 * 197.54834 * 19 17 16 22 22 H 1.48500 * 109.47104 * 60.00178 * 21 19 17 23 23 H 1.48499 * 109.47095 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47463 * 300.00145 * 21 19 17 25 25 C 1.38652 * 120.36332 * 180.25508 * 12 11 10 26 26 N 1.30926 * 107.12031 * 0.26630 * 9 8 7 27 27 H 1.09000 * 109.46921 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46768 * 299.99321 * 1 2 3 29 29 H 1.08998 * 109.46980 * 59.99592 * 1 2 3 30 30 H 1.08999 * 109.46768 * 240.00679 * 2 1 3 31 31 H 1.08998 * 109.46980 * 120.00408 * 2 1 3 32 32 H 1.09009 * 109.46568 * 150.02535 * 10 9 8 33 33 H 1.08997 * 109.47312 * 30.03263 * 10 9 8 34 34 H 0.97003 * 119.99664 * 0.02562 * 11 10 9 35 35 H 1.08000 * 119.40361 * 359.97438 * 13 12 11 36 36 H 1.07999 * 119.71925 * 180.02562 * 15 14 13 37 37 H 0.96997 * 119.99738 * 180.02562 * 20 19 17 38 38 H 1.08005 * 120.93135 * 0.03552 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5454 0.0005 5 8 4.0883 0.5827 0.0005 6 6 3.9159 2.9163 0.0011 7 7 3.2405 4.0352 0.0008 8 8 4.0001 4.9808 0.0010 9 6 5.2660 4.5509 0.0021 10 6 6.5034 5.4111 0.0021 11 7 6.9050 5.6892 -1.3791 12 6 8.0333 6.4727 -1.6343 13 6 8.7824 6.9929 -0.5809 14 7 9.8544 7.7302 -0.8028 15 6 10.2661 8.0151 -2.0188 16 6 9.5659 7.5362 -3.1421 17 6 10.0073 7.8423 -4.4504 18 1 11.0412 8.1012 -4.6247 19 6 9.1044 7.8097 -5.5189 20 7 7.8169 7.8395 -5.2886 21 14 9.7374 7.7238 -7.2743 22 1 10.5452 6.4900 -7.4494 23 1 8.5881 7.7011 -8.2144 24 1 10.5822 8.9124 -7.5547 25 6 8.4171 6.7450 -2.9385 26 7 5.2286 3.2422 -0.0033 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 7.3096 4.8878 0.5165 33 1 6.2937 6.3494 0.5155 34 1 6.3875 5.3294 -2.1164 35 1 8.4829 6.7855 0.4358 36 1 11.1490 8.6217 -2.1567 37 1 7.1911 7.8165 -6.0293 38 1 7.8536 6.3590 -3.7751 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171238754.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:32 Heat of formation + Delta-G solvation = 23.495080 kcal Electronic energy + Delta-G solvation = -24740.826238 eV Core-core repulsion = 20780.125992 eV Total energy + Delta-G solvation = -3960.700246 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.13772 -40.85075 -38.57535 -37.30573 -36.37728 -35.61712 -34.03240 -33.11215 -32.10508 -30.40065 -29.28520 -26.79596 -26.26906 -25.57757 -23.80828 -23.25815 -22.06171 -21.50451 -20.73208 -18.73243 -18.64151 -17.92235 -17.37267 -17.02510 -16.81935 -16.40037 -15.56748 -15.13684 -14.96811 -14.64632 -14.49830 -14.16517 -13.79969 -13.55514 -13.28854 -13.02069 -12.74378 -12.60661 -12.23114 -12.17321 -12.14371 -11.68905 -11.61138 -11.51186 -11.35230 -11.27693 -11.07314 -11.02957 -10.70934 -10.58009 -9.98970 -9.76644 -9.36987 -8.14652 -7.84076 -6.92622 -6.59950 -4.52926 0.29852 1.05472 1.54438 2.27332 2.37047 2.68905 3.00452 3.01896 3.04345 3.20194 3.34180 3.51896 3.84043 4.00171 4.38768 4.43590 4.45830 4.58723 4.76143 4.87922 5.08411 5.21535 5.28887 5.41052 5.43407 5.48658 5.70069 5.77015 6.03235 6.38818 6.50520 6.81653 6.97370 7.01521 7.06943 7.39904 7.56306 7.58165 7.88905 8.05537 8.16615 8.51158 8.68891 8.75310 9.67168 10.03936 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.002504 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.579402 B =11180.933655 C =12297.162762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.339 6.339 4 C 0.567 3.433 5 O -0.461 6.461 6 C 0.140 3.860 7 N -0.319 5.319 8 O 0.117 5.883 9 C 0.192 3.808 10 C 0.228 3.772 11 N -0.752 5.752 12 C 0.173 3.827 13 C -0.098 4.098 14 N -0.443 5.443 15 C -0.046 4.046 16 C 0.095 3.905 17 C -0.448 4.448 18 H 0.083 0.917 19 C 0.076 3.924 20 N -0.786 5.786 21 Si 0.911 3.089 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.202 4.202 26 N -0.422 5.422 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.396 0.604 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.282 0.718 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.557 -10.635 7.301 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.255 6.255 4 C 0.405 3.595 5 O -0.343 6.343 6 C -0.131 4.131 7 N -0.020 5.020 8 O 0.043 5.957 9 C -0.030 4.030 10 C 0.102 3.898 11 N -0.390 5.390 12 C 0.073 3.927 13 C -0.257 4.257 14 N -0.150 5.150 15 C -0.211 4.211 16 C 0.090 3.910 17 C -0.478 4.478 18 H 0.102 0.898 19 C -0.143 4.143 20 N -0.410 5.410 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.188 1.188 25 C -0.233 4.233 26 N -0.156 5.156 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.230 0.770 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.093 0.907 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.903 -11.196 8.126 19.614 hybrid contribution -0.524 -0.539 -1.912 2.054 sum -14.427 -11.735 6.214 19.608 Atomic orbital electron populations 1.21833 0.91835 1.03364 1.03976 1.23260 0.95852 0.78536 1.03367 1.86571 1.21529 1.33707 1.83674 1.18621 0.81477 0.85184 0.74205 1.90922 1.60505 1.39887 1.43009 1.24112 0.87193 0.93676 1.08144 1.75100 1.16827 0.95494 1.14557 1.85407 1.15812 1.31187 1.63295 1.29193 0.88752 0.89457 0.95556 1.19662 0.85569 0.96112 0.88498 1.44097 1.31483 1.59992 1.03445 1.18559 0.86654 0.92000 0.95445 1.21218 0.98536 1.10319 0.95616 1.66837 1.12161 1.10403 1.25619 1.22365 1.03928 1.07399 0.87396 1.18268 0.90751 0.88203 0.93807 1.19543 0.96882 1.40266 0.91115 0.89846 1.25965 0.94407 0.91983 1.01959 1.69811 1.02659 1.33860 1.34678 0.86321 0.79376 0.80196 0.80642 1.18703 1.20338 1.18784 1.21083 1.02998 1.06166 0.93006 1.72105 1.15914 1.10426 1.17170 0.89652 0.91182 0.91143 0.90444 0.90474 0.87588 0.88299 0.77011 0.86566 0.85768 0.90678 0.85580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.29 37.16 0.38 -0.41 16 2 C 0.06 0.49 6.19 37.16 0.23 0.72 16 3 O -0.34 -3.80 10.23 -40.35 -0.41 -4.22 16 4 C 0.57 7.64 7.99 34.90 0.28 7.92 16 5 O -0.46 -7.04 16.89 -19.18 -0.32 -7.36 16 6 C 0.14 1.98 8.04 -156.17 -1.26 0.72 16 7 N -0.32 -4.30 12.20 30.93 0.38 -3.93 16 8 O 0.12 1.47 11.29 17.98 0.20 1.67 16 9 C 0.19 2.44 7.86 -13.01 -0.10 2.33 16 10 C 0.23 2.86 5.54 -5.19 -0.03 2.83 16 11 N -0.75 -12.45 5.73 -59.75 -0.34 -12.79 16 12 C 0.17 3.65 6.66 -83.70 -0.56 3.10 16 13 C -0.10 -2.10 10.49 -17.08 -0.18 -2.28 16 14 N -0.44 -10.52 10.33 -12.37 -0.13 -10.65 16 15 C -0.05 -1.13 10.97 -16.74 -0.18 -1.31 16 16 C 0.09 2.42 5.59 -106.69 -0.60 1.82 16 17 C -0.45 -11.24 9.08 -37.74 -0.34 -11.58 16 18 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 19 C 0.08 1.80 5.18 -17.34 -0.09 1.71 16 20 N -0.79 -19.16 10.92 55.55 0.61 -18.55 16 21 Si 0.91 17.78 29.59 -169.99 -5.03 12.75 16 22 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 23 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 25 C -0.20 -4.91 8.67 -38.40 -0.33 -5.24 16 26 N -0.42 -6.18 11.57 -9.94 -0.11 -6.30 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.11 1.26 7.96 -51.92 -0.41 0.85 16 33 H 0.10 1.05 7.96 -51.93 -0.41 0.64 16 34 H 0.40 6.45 8.48 -40.82 -0.35 6.10 16 35 H 0.12 2.10 6.73 -52.49 -0.35 1.74 16 36 H 0.12 2.83 8.06 -52.49 -0.42 2.41 16 37 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 38 H 0.13 3.15 6.19 -52.48 -0.32 2.82 16 LS Contribution 344.92 15.07 5.20 5.20 Total: -1.00 -29.40 344.92 -6.68 -36.08 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -3.94 Total: 7.76 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -2.78 Total: 0.34 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.40 Total: -52.22 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.53 Total: -9.91 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.40 -6.68 -36.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171238754.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.572 kcal (2) G-P(sol) polarization free energy of solvation -29.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds