Wall clock time and date at job start Tue Mar 31 2020 12:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45200 * 109.46913 * 2 1 4 4 C 1.34647 * 116.99716 * 179.97438 * 3 2 1 5 5 O 1.21394 * 119.99931 * 0.02562 * 4 3 2 6 6 C 1.48359 * 119.99827 * 180.02562 * 4 3 2 7 7 N 1.30696 * 126.41305 * 359.97438 * 6 4 3 8 8 O 1.21289 * 110.10847 * 180.02562 * 7 6 4 9 9 C 1.33692 * 110.01674 * 359.97438 * 8 7 6 10 10 C 1.50703 * 126.43677 * 179.97438 * 9 8 7 11 11 N 1.46501 * 109.47579 * 270.02253 * 10 9 8 12 12 C 1.39720 * 120.00193 * 180.02562 * 11 10 9 13 13 C 1.39330 * 120.36067 * 0.02562 * 12 11 10 14 14 N 1.31989 * 121.20518 * 179.70142 * 13 12 11 15 15 C 1.31496 * 122.05860 * 0.27475 * 14 13 12 16 16 C 1.40770 * 120.56377 * 0.02562 * 15 14 13 17 17 C 1.41424 * 120.62071 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99844 * 23.47660 * 17 16 15 19 19 C 1.39928 * 119.99682 * 203.47164 * 17 16 15 20 20 N 1.30834 * 120.00210 * 17.55404 * 19 17 16 21 21 Si 1.86800 * 119.99891 * 197.54834 * 19 17 16 22 22 H 1.48500 * 109.47104 * 60.00178 * 21 19 17 23 23 H 1.48499 * 109.47095 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47463 * 300.00145 * 21 19 17 25 25 C 1.38652 * 120.36332 * 180.25508 * 12 11 10 26 26 N 1.30926 * 107.12031 * 0.26630 * 9 8 7 27 27 H 1.09000 * 109.46921 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46768 * 299.99321 * 1 2 3 29 29 H 1.08998 * 109.46980 * 59.99592 * 1 2 3 30 30 H 1.08999 * 109.46768 * 240.00679 * 2 1 3 31 31 H 1.08998 * 109.46980 * 120.00408 * 2 1 3 32 32 H 1.09009 * 109.46568 * 150.02535 * 10 9 8 33 33 H 1.08997 * 109.47312 * 30.03263 * 10 9 8 34 34 H 0.97003 * 119.99664 * 0.02562 * 11 10 9 35 35 H 1.08000 * 119.40361 * 359.97438 * 13 12 11 36 36 H 1.07999 * 119.71925 * 180.02562 * 15 14 13 37 37 H 0.96997 * 119.99738 * 180.02562 * 20 19 17 38 38 H 1.08005 * 120.93135 * 0.03552 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5454 0.0005 5 8 4.0883 0.5827 0.0005 6 6 3.9159 2.9163 0.0011 7 7 3.2405 4.0352 0.0008 8 8 4.0001 4.9808 0.0010 9 6 5.2660 4.5509 0.0021 10 6 6.5034 5.4111 0.0021 11 7 6.9050 5.6892 -1.3791 12 6 8.0333 6.4727 -1.6343 13 6 8.7824 6.9929 -0.5809 14 7 9.8544 7.7302 -0.8028 15 6 10.2661 8.0151 -2.0188 16 6 9.5659 7.5362 -3.1421 17 6 10.0073 7.8423 -4.4504 18 1 11.0412 8.1012 -4.6247 19 6 9.1044 7.8097 -5.5189 20 7 7.8169 7.8395 -5.2886 21 14 9.7374 7.7238 -7.2743 22 1 10.5452 6.4900 -7.4494 23 1 8.5881 7.7011 -8.2144 24 1 10.5822 8.9124 -7.5547 25 6 8.4171 6.7450 -2.9385 26 7 5.2286 3.2422 -0.0033 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 7.3096 4.8878 0.5165 33 1 6.2937 6.3494 0.5155 34 1 6.3875 5.3294 -2.1164 35 1 8.4829 6.7855 0.4358 36 1 11.1490 8.6217 -2.1567 37 1 7.1911 7.8165 -6.0293 38 1 7.8536 6.3590 -3.7751 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171238754.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:31 Heat of formation + Delta-G solvation = 3.398585 kcal Electronic energy + Delta-G solvation = -24741.697687 eV Core-core repulsion = 20780.125992 eV Total energy + Delta-G solvation = -3961.571695 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -47.20899 -41.81473 -40.28345 -38.26140 -37.59179 -36.87703 -35.80253 -34.29183 -32.74109 -32.18378 -30.76951 -27.83719 -27.67686 -27.27610 -24.75722 -24.15028 -23.65147 -22.65949 -22.31282 -19.82732 -19.71996 -19.09104 -18.92077 -17.93147 -17.89481 -17.75646 -17.24097 -16.70887 -16.58082 -15.67414 -15.40543 -15.33517 -15.04016 -14.91135 -14.50808 -14.08527 -13.80924 -13.70653 -13.45624 -13.42269 -13.19052 -13.12869 -13.07401 -12.73342 -12.65101 -12.64217 -12.38660 -12.20288 -11.90443 -11.74963 -11.59522 -11.27731 -11.12688 -9.96943 -9.67794 -8.68008 -8.19294 -6.40242 -0.74907 -0.00707 0.62951 0.96938 1.21285 1.23439 1.31868 1.41627 1.51617 1.58832 2.21354 2.29215 2.53676 2.69921 2.80284 3.42550 3.81727 3.84325 3.89684 3.89739 4.15095 4.22704 4.32596 4.45506 4.46435 4.58322 4.66908 4.83534 4.83669 4.89076 4.99918 5.18646 5.20898 5.30249 5.67903 5.85607 6.04542 6.05222 6.30535 6.52404 6.65534 6.72309 6.86199 6.97205 7.86239 8.29033 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.002504 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.579402 B =11180.933655 C =12297.162762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.341 6.341 4 C 0.570 3.430 5 O -0.486 6.486 6 C 0.128 3.872 7 N -0.319 5.319 8 O 0.128 5.872 9 C 0.204 3.796 10 C 0.227 3.773 11 N -0.746 5.746 12 C 0.189 3.811 13 C -0.096 4.096 14 N -0.453 5.453 15 C -0.074 4.074 16 C 0.070 3.930 17 C -0.483 4.483 18 H 0.083 0.917 19 C 0.039 3.961 20 N -0.813 5.813 21 Si 0.981 3.019 22 H -0.262 1.262 23 H -0.270 1.270 24 H -0.258 1.258 25 C -0.228 4.228 26 N -0.443 5.443 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.397 0.603 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.289 0.711 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.783 -11.243 7.854 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.256 6.256 4 C 0.409 3.591 5 O -0.370 6.370 6 C -0.143 4.143 7 N -0.019 5.019 8 O 0.053 5.947 9 C -0.017 4.017 10 C 0.102 3.898 11 N -0.382 5.382 12 C 0.087 3.913 13 C -0.256 4.256 14 N -0.160 5.160 15 C -0.237 4.237 16 C 0.065 3.935 17 C -0.512 4.512 18 H 0.101 0.899 19 C -0.178 4.178 20 N -0.438 5.438 21 Si 0.802 3.198 22 H -0.187 1.187 23 H -0.194 1.194 24 H -0.182 1.182 25 C -0.259 4.259 26 N -0.177 5.177 27 H 0.129 0.871 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.231 0.769 35 H 0.175 0.825 36 H 0.145 0.855 37 H 0.100 0.900 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.169 -11.817 8.701 21.106 hybrid contribution -0.292 -0.418 -1.931 1.997 sum -15.462 -12.236 6.770 20.847 Atomic orbital electron populations 1.21876 0.89676 1.04970 1.03887 1.23661 0.97468 0.76985 1.03920 1.86587 1.20127 1.35911 1.82960 1.18637 0.82063 0.84723 0.73638 1.90902 1.61186 1.40468 1.44466 1.24282 0.87178 0.94190 1.08602 1.75094 1.16959 0.95481 1.14343 1.85404 1.15720 1.30770 1.62852 1.29082 0.88750 0.88920 0.94916 1.19954 0.85878 0.97749 0.86260 1.44098 1.29945 1.58590 1.05557 1.18491 0.87314 0.91239 0.94286 1.21870 0.97480 1.08842 0.97435 1.66861 1.13095 1.10887 1.25163 1.22430 1.04768 1.08797 0.87703 1.18579 0.91649 0.88868 0.94447 1.19798 0.97345 1.42056 0.92028 0.89879 1.26743 0.94383 0.91061 1.05611 1.69856 1.03643 1.34229 1.36093 0.85260 0.78896 0.80118 0.75556 1.18663 1.19399 1.18192 1.21067 1.03361 1.07361 0.94133 1.72094 1.16417 1.11378 1.17836 0.87149 0.91083 0.91372 0.90145 0.89773 0.86000 0.85233 0.76889 0.82538 0.85476 0.90047 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 71.98 0.74 -0.50 16 2 C 0.05 0.74 6.19 71.98 0.45 1.19 16 3 O -0.34 -7.35 10.23 -55.56 -0.57 -7.91 16 4 C 0.57 15.04 7.99 70.52 0.56 15.61 16 5 O -0.49 -14.70 16.89 20.18 0.34 -14.36 16 6 C 0.13 3.50 8.04 137.29 1.10 4.60 16 7 N -0.32 -8.15 12.20 -59.33 -0.72 -8.87 16 8 O 0.13 2.95 11.29 74.41 0.84 3.79 16 9 C 0.20 4.73 7.86 88.36 0.69 5.42 16 10 C 0.23 4.94 5.54 85.63 0.47 5.41 16 11 N -0.75 -23.19 5.73 -342.94 -1.96 -25.15 16 12 C 0.19 7.75 6.66 38.25 0.25 8.00 16 13 C -0.10 -3.91 10.49 84.93 0.89 -3.02 16 14 N -0.45 -21.17 10.33 -193.05 -1.99 -23.17 16 15 C -0.07 -3.67 10.97 85.36 0.94 -2.74 16 16 C 0.07 3.64 5.59 -21.21 -0.12 3.52 16 17 C -0.48 -24.91 9.08 23.46 0.21 -24.69 16 18 H 0.08 4.10 7.90 -2.91 -0.02 4.08 16 19 C 0.04 1.85 5.18 85.25 0.44 2.29 16 20 N -0.81 -40.25 10.92 21.82 0.24 -40.01 16 21 Si 0.98 36.58 29.59 68.60 2.03 38.61 16 22 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 23 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 24 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 25 C -0.23 -11.22 8.67 23.04 0.20 -11.02 16 26 N -0.44 -12.34 11.57 -302.76 -3.50 -15.84 16 27 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.12 2.42 7.96 -2.38 -0.02 2.40 16 33 H 0.13 2.16 7.96 -2.39 -0.02 2.15 16 34 H 0.40 12.41 8.48 -92.71 -0.79 11.62 16 35 H 0.16 4.99 6.73 -2.91 -0.02 4.97 16 36 H 0.13 6.01 8.06 -2.91 -0.02 5.99 16 37 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 38 H 0.11 5.75 6.19 -2.91 -0.02 5.73 16 Total: -1.00 -64.28 344.92 1.88 -62.40 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.35 Total: 26.43 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 6.84 Total: 4.08 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -7.95 Total: -113.04 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.61 Total: -18.48 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 2.03 Total: 38.61 kcal Total: -64.28 1.88 -62.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171238754.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.800 kcal (2) G-P(sol) polarization free energy of solvation -64.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds