Wall clock time and date at job start Tue Mar 31 2020 11:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31164 * 1 3 3 Cl 1.73599 * 119.99688 * 2 1 4 4 C 1.50695 * 119.99976 * 180.02562 * 2 1 3 5 5 N 1.46900 * 109.47311 * 115.00218 * 4 2 1 6 6 C 1.46896 * 110.99613 * 293.95094 * 5 4 2 7 7 C 1.46905 * 110.99907 * 170.00049 * 5 4 2 8 8 H 1.09000 * 110.91519 * 60.54054 * 7 5 4 9 9 C 1.55154 * 111.00151 * 296.63691 * 7 5 4 10 10 C 1.54317 * 102.86195 * 206.23068 * 9 7 5 11 11 N 1.47020 * 107.27424 * 22.52613 * 10 9 7 12 12 C 1.34776 * 125.64724 * 180.96656 * 11 10 9 13 13 O 1.21283 * 119.99899 * 179.69277 * 12 11 10 14 14 C 1.50697 * 120.00363 * 359.69308 * 12 11 10 15 15 S 1.80995 * 109.47530 * 179.97438 * 14 12 11 16 16 C 1.76205 * 100.00111 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99882 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99943 * 179.72534 * 16 15 14 19 19 N 1.31627 * 119.99634 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99960 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.46916 * 89.99802 * 20 18 16 22 22 H 1.48501 * 109.47100 * 209.99859 * 20 18 16 23 23 H 1.48504 * 109.47222 * 330.00134 * 20 18 16 24 24 C 1.47423 * 108.70405 * 0.70586 * 11 10 9 25 25 H 1.07998 * 120.00178 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.99868 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47084 * 354.99460 * 4 2 1 28 28 H 1.08998 * 109.46919 * 235.00010 * 4 2 1 29 29 H 1.08998 * 109.47353 * 296.69649 * 6 5 4 30 30 H 1.09002 * 109.47160 * 56.70149 * 6 5 4 31 31 H 1.09004 * 109.47065 * 176.69761 * 6 5 4 32 32 H 1.09000 * 110.72028 * 324.78773 * 9 7 5 33 33 H 1.09005 * 110.72154 * 88.06369 * 9 7 5 34 34 H 1.08999 * 109.98345 * 263.04986 * 10 9 7 35 35 H 1.09001 * 109.77652 * 141.88571 * 10 9 7 36 36 H 1.09004 * 109.46720 * 59.99686 * 14 12 11 37 37 H 1.09002 * 109.47135 * 300.00243 * 14 12 11 38 38 H 0.96998 * 119.99630 * 179.97438 * 19 18 16 39 39 H 1.09001 * 110.36675 * 94.93688 * 24 11 10 40 40 H 1.09000 * 110.36514 * 217.14776 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5035 0.0000 4 6 2.0651 -1.3051 -0.0006 5 7 2.8169 -1.4359 -1.2558 6 6 1.9080 -1.5566 -2.4035 7 6 3.7451 -2.5731 -1.1974 8 1 3.2065 -3.5073 -1.0387 9 6 4.8202 -2.3575 -0.0997 10 6 6.0066 -3.2019 -0.6103 11 7 5.8364 -3.3611 -2.0619 12 6 6.6569 -4.0522 -2.8778 13 8 6.4148 -4.1215 -4.0642 14 6 7.8750 -4.7390 -2.3161 15 16 8.7653 -5.5760 -3.6512 16 6 10.1022 -6.2718 -2.7383 17 1 10.1696 -6.1113 -1.6724 18 6 11.0652 -7.0314 -3.3880 19 7 12.0641 -7.5508 -2.7061 20 14 10.9444 -7.3154 -5.2304 21 1 11.6700 -6.2354 -5.9463 22 1 11.5504 -8.6280 -5.5697 23 1 9.5170 -7.3084 -5.6398 24 6 4.6164 -2.6448 -2.4762 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.3601 -2.1317 0.0887 28 1 2.7572 -1.3253 0.8412 29 1 1.3211 -2.4701 -2.3078 30 1 1.2394 -0.6962 -2.4296 31 1 2.4892 -1.5932 -3.3250 32 1 5.0936 -1.3047 -0.0291 33 1 4.4695 -2.7314 0.8623 34 1 6.0035 -4.1791 -0.1274 35 1 6.9436 -2.6858 -0.4013 36 1 7.5673 -5.4715 -1.5699 37 1 8.5273 -3.9994 -1.8517 38 1 12.7369 -8.0819 -3.1601 39 1 4.8647 -1.6416 -2.8229 40 1 4.0988 -3.1987 -3.2594 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188958877.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:50 Heat of formation + Delta-G solvation = -11.022707 kcal Electronic energy + Delta-G solvation = -21729.401333 eV Core-core repulsion = 18311.064648 eV Total energy + Delta-G solvation = -3418.336685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.16473 -38.54299 -37.13331 -36.05815 -33.41097 -32.43686 -31.16235 -29.90223 -28.15047 -27.66878 -25.62078 -24.44215 -22.89483 -20.63475 -20.40096 -19.40355 -17.74781 -17.05966 -16.72364 -16.37892 -15.62357 -15.31300 -15.04172 -14.78014 -14.61398 -14.20385 -14.00198 -13.71786 -13.39395 -13.04233 -12.85475 -12.73426 -12.60406 -12.47904 -12.30317 -11.96109 -11.87553 -11.52553 -11.26170 -11.22120 -11.17957 -11.05341 -11.00192 -10.60467 -9.85774 -9.61923 -9.53708 -8.99865 -8.85582 -8.58214 -8.49582 -6.91843 -6.28652 -4.00388 1.37506 1.90758 2.65178 2.94013 3.13189 3.33721 3.49606 3.51394 3.65288 4.03981 4.19761 4.33650 4.39298 4.64101 4.69272 4.78559 4.85543 5.03929 5.06939 5.09156 5.10454 5.13290 5.20383 5.24410 5.45254 5.55819 5.57570 5.59180 5.65295 5.69399 5.74241 5.78735 5.87839 6.02031 6.28723 6.49717 6.60542 7.56600 7.94469 8.41808 8.42917 9.17554 10.80545 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.038193 B = 0.002290 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.943598 B =12223.406209 C =12526.291042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.057 4.057 3 Cl -0.075 7.075 4 C 0.088 3.912 5 N -0.524 5.524 6 C 0.018 3.982 7 C 0.068 3.932 8 H 0.061 0.939 9 C -0.124 4.124 10 C 0.102 3.898 11 N -0.624 5.624 12 C 0.548 3.452 13 O -0.518 6.518 14 C -0.117 4.117 15 S -0.143 6.143 16 C -0.520 4.520 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.120 3.880 25 H 0.120 0.880 26 H 0.113 0.887 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.029 0.971 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.077 0.923 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.556 15.056 9.096 30.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.084 4.084 3 Cl -0.046 7.046 4 C -0.040 4.040 5 N -0.248 5.248 6 C -0.129 4.129 7 C -0.041 4.041 8 H 0.079 0.921 9 C -0.162 4.162 10 C -0.021 4.021 11 N -0.362 5.362 12 C 0.336 3.664 13 O -0.392 6.392 14 C -0.267 4.267 15 S 0.083 5.917 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.004 4.004 25 H 0.138 0.862 26 H 0.131 0.869 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.309 15.330 7.208 29.629 hybrid contribution 0.033 -0.754 0.902 1.176 sum -24.276 14.575 8.110 29.454 Atomic orbital electron populations 1.24061 0.93878 1.03731 1.00251 1.23205 0.93438 0.88350 1.03371 1.98391 1.78133 1.31449 1.96668 1.21285 0.96811 0.92036 0.93821 1.61945 1.18648 1.41647 1.02529 1.22485 0.96069 1.00578 0.93811 1.22816 0.92953 0.91878 0.96420 0.92097 1.22734 0.94044 1.01709 0.97703 1.22018 0.99037 1.00235 0.80855 1.48372 1.26119 1.53240 1.08452 1.19984 0.83176 0.77438 0.85765 1.90707 1.73070 1.60217 1.15244 1.23246 0.96796 1.02567 1.04122 1.84791 1.29343 1.65157 1.12366 1.22306 1.09357 1.37515 0.97606 0.89376 1.24714 0.93900 0.93866 0.98854 1.69938 1.12147 1.33091 1.36507 0.86734 0.81470 0.78565 0.85085 1.19187 1.19949 1.15916 1.22062 0.85002 0.97599 0.95697 0.86193 0.86865 0.92498 0.88675 0.95286 0.91034 0.90535 0.89096 0.90157 0.91071 0.90785 0.88558 0.88511 0.91945 0.90482 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.87 13.92 28.97 0.40 -0.47 16 2 C -0.06 -0.36 4.85 -36.07 -0.17 -0.53 16 3 Cl -0.07 -0.60 28.99 -51.86 -1.50 -2.10 16 4 C 0.09 0.54 5.17 -4.98 -0.03 0.51 16 5 N -0.52 -3.99 4.65 -233.75 -1.09 -5.07 16 6 C 0.02 0.13 9.18 60.06 0.55 0.68 16 7 C 0.07 0.58 2.71 -65.56 -0.18 0.40 16 8 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 9 C -0.12 -0.95 5.41 -24.90 -0.13 -1.08 16 10 C 0.10 1.04 6.48 -3.07 -0.02 1.02 16 11 N -0.62 -8.68 3.33 -170.53 -0.57 -9.25 16 12 C 0.55 10.20 7.87 -10.99 -0.09 10.12 16 13 O -0.52 -11.56 16.12 5.56 0.09 -11.47 16 14 C -0.12 -2.32 5.35 36.00 0.19 -2.12 16 15 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 16 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 17 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 18 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 19 N -0.88 -26.60 13.97 55.49 0.78 -25.82 16 20 Si 0.86 21.89 27.74 -169.99 -4.72 17.17 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 24 C 0.12 1.40 5.28 -2.53 -0.01 1.38 16 25 H 0.12 0.41 7.84 -52.49 -0.41 -0.01 16 26 H 0.11 0.50 8.06 -52.48 -0.42 0.07 16 27 H 0.06 0.29 7.77 -51.93 -0.40 -0.11 16 28 H 0.10 0.55 6.81 -51.93 -0.35 0.19 16 29 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.48 7.09 -51.93 -0.37 0.11 16 31 H 0.08 0.60 7.06 -51.93 -0.37 0.23 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.46 7.88 -51.93 -0.41 0.05 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.78 8.14 -51.91 -0.42 1.36 16 37 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 38 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 0.96 7.89 -51.93 -0.41 0.55 16 LS Contribution 357.93 15.07 5.39 5.39 Total: -1.00 -33.69 357.93 -8.98 -42.67 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -6.10 Total: -3.74 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 0.73 Total: -2.12 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -0.88 Total: -40.14 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.72 Total: 17.17 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.69 -8.98 -42.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188958877.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.652 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds