Wall clock time and date at job start Tue Mar 31 2020 11:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31164 * 1 3 3 Cl 1.73599 * 119.99688 * 2 1 4 4 C 1.50695 * 119.99976 * 180.02562 * 2 1 3 5 5 N 1.46900 * 109.47311 * 115.00218 * 4 2 1 6 6 C 1.46896 * 110.99613 * 293.95094 * 5 4 2 7 7 C 1.46905 * 110.99907 * 170.00049 * 5 4 2 8 8 H 1.09000 * 110.91519 * 60.54054 * 7 5 4 9 9 C 1.55154 * 111.00151 * 296.63691 * 7 5 4 10 10 C 1.54317 * 102.86195 * 206.23068 * 9 7 5 11 11 N 1.47020 * 107.27424 * 22.52613 * 10 9 7 12 12 C 1.34776 * 125.64724 * 180.96656 * 11 10 9 13 13 O 1.21283 * 119.99899 * 179.69277 * 12 11 10 14 14 C 1.50697 * 120.00363 * 359.69308 * 12 11 10 15 15 S 1.80995 * 109.47530 * 179.97438 * 14 12 11 16 16 C 1.76205 * 100.00111 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99882 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99943 * 179.72534 * 16 15 14 19 19 N 1.31627 * 119.99634 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99960 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.46916 * 89.99802 * 20 18 16 22 22 H 1.48501 * 109.47100 * 209.99859 * 20 18 16 23 23 H 1.48504 * 109.47222 * 330.00134 * 20 18 16 24 24 C 1.47423 * 108.70405 * 0.70586 * 11 10 9 25 25 H 1.07998 * 120.00178 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.99868 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47084 * 354.99460 * 4 2 1 28 28 H 1.08998 * 109.46919 * 235.00010 * 4 2 1 29 29 H 1.08998 * 109.47353 * 296.69649 * 6 5 4 30 30 H 1.09002 * 109.47160 * 56.70149 * 6 5 4 31 31 H 1.09004 * 109.47065 * 176.69761 * 6 5 4 32 32 H 1.09000 * 110.72028 * 324.78773 * 9 7 5 33 33 H 1.09005 * 110.72154 * 88.06369 * 9 7 5 34 34 H 1.08999 * 109.98345 * 263.04986 * 10 9 7 35 35 H 1.09001 * 109.77652 * 141.88571 * 10 9 7 36 36 H 1.09004 * 109.46720 * 59.99686 * 14 12 11 37 37 H 1.09002 * 109.47135 * 300.00243 * 14 12 11 38 38 H 0.96998 * 119.99630 * 179.97438 * 19 18 16 39 39 H 1.09001 * 110.36675 * 94.93688 * 24 11 10 40 40 H 1.09000 * 110.36514 * 217.14776 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5035 0.0000 4 6 2.0651 -1.3051 -0.0006 5 7 2.8169 -1.4359 -1.2558 6 6 1.9080 -1.5566 -2.4035 7 6 3.7451 -2.5731 -1.1974 8 1 3.2065 -3.5073 -1.0387 9 6 4.8202 -2.3575 -0.0997 10 6 6.0066 -3.2019 -0.6103 11 7 5.8364 -3.3611 -2.0619 12 6 6.6569 -4.0522 -2.8778 13 8 6.4148 -4.1215 -4.0642 14 6 7.8750 -4.7390 -2.3161 15 16 8.7653 -5.5760 -3.6512 16 6 10.1022 -6.2718 -2.7383 17 1 10.1696 -6.1113 -1.6724 18 6 11.0652 -7.0314 -3.3880 19 7 12.0641 -7.5508 -2.7061 20 14 10.9444 -7.3154 -5.2304 21 1 11.6700 -6.2354 -5.9463 22 1 11.5504 -8.6280 -5.5697 23 1 9.5170 -7.3084 -5.6398 24 6 4.6164 -2.6448 -2.4762 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.3601 -2.1317 0.0887 28 1 2.7572 -1.3253 0.8412 29 1 1.3211 -2.4701 -2.3078 30 1 1.2394 -0.6962 -2.4296 31 1 2.4892 -1.5932 -3.3250 32 1 5.0936 -1.3047 -0.0291 33 1 4.4695 -2.7314 0.8623 34 1 6.0035 -4.1791 -0.1274 35 1 6.9436 -2.6858 -0.4013 36 1 7.5673 -5.4715 -1.5699 37 1 8.5273 -3.9994 -1.8517 38 1 12.7369 -8.0819 -3.1601 39 1 4.8647 -1.6416 -2.8229 40 1 4.0988 -3.1987 -3.2594 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188958877.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:50 Heat of formation + Delta-G solvation = -33.597529 kcal Electronic energy + Delta-G solvation = -21730.380251 eV Core-core repulsion = 18311.064648 eV Total energy + Delta-G solvation = -3419.315602 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22347 -39.50938 -37.85183 -36.82445 -34.67963 -33.99614 -32.22047 -31.02025 -29.16560 -28.24865 -27.85068 -25.22312 -23.74985 -21.35074 -20.91896 -20.65326 -19.62231 -18.20580 -17.82284 -17.13645 -16.89692 -16.69214 -16.35305 -15.84410 -15.61476 -15.34577 -14.94462 -14.89971 -14.59530 -14.25756 -13.96852 -13.80488 -13.44378 -13.33991 -13.24893 -13.09065 -13.01992 -12.79852 -12.67839 -12.41957 -12.15735 -11.91531 -11.87499 -11.84682 -11.60370 -11.17623 -11.05784 -10.55233 -10.06074 -9.75867 -9.39163 -9.01944 -8.52087 -6.23436 0.92684 0.98689 1.31061 1.44326 1.45900 1.48494 1.52362 1.99844 2.24581 2.66397 2.86029 2.92156 3.27955 3.62652 3.71150 3.79830 4.02415 4.15834 4.20408 4.30443 4.36560 4.39770 4.44475 4.57269 4.64858 4.70465 4.78074 4.79556 4.86333 4.95262 5.03460 5.16705 5.21965 5.28062 5.32765 5.70411 5.97054 5.98981 6.10873 6.32359 6.92954 7.02114 8.60208 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.038193 B = 0.002290 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.943598 B =12223.406209 C =12526.291042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.075 4.075 3 Cl -0.098 7.098 4 C 0.090 3.910 5 N -0.533 5.533 6 C 0.021 3.979 7 C 0.081 3.919 8 H 0.069 0.931 9 C -0.111 4.111 10 C 0.091 3.909 11 N -0.615 5.615 12 C 0.548 3.452 13 O -0.565 6.565 14 C -0.101 4.101 15 S -0.177 6.177 16 C -0.527 4.527 17 H 0.063 0.937 18 C 0.046 3.954 19 N -0.915 5.915 20 Si 0.914 3.086 21 H -0.263 1.263 22 H -0.258 1.258 23 H -0.237 1.237 24 C 0.117 3.883 25 H 0.140 0.860 26 H 0.116 0.884 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.277 0.723 39 H 0.071 0.929 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.580 15.499 10.087 32.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 Cl -0.070 7.070 4 C -0.037 4.037 5 N -0.257 5.257 6 C -0.127 4.127 7 C -0.028 4.028 8 H 0.086 0.914 9 C -0.149 4.149 10 C -0.031 4.031 11 N -0.350 5.350 12 C 0.336 3.664 13 O -0.443 6.443 14 C -0.252 4.252 15 S 0.050 5.950 16 C -0.675 4.675 17 H 0.082 0.918 18 C -0.160 4.160 19 N -0.553 5.553 20 Si 0.736 3.264 21 H -0.187 1.187 22 H -0.182 1.182 23 H -0.161 1.161 24 C -0.006 4.006 25 H 0.157 0.843 26 H 0.134 0.866 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.358 15.797 8.257 31.820 hybrid contribution 0.519 -0.788 0.734 1.196 sum -25.839 15.009 8.991 31.205 Atomic orbital electron populations 1.24294 0.93416 1.04799 0.97716 1.23288 0.93798 0.87566 1.05525 1.98385 1.78712 1.32981 1.96907 1.21326 0.97137 0.92332 0.92889 1.61907 1.19170 1.41125 1.03486 1.22447 0.95914 1.01144 0.93214 1.22657 0.92955 0.92685 0.94478 0.91361 1.22717 0.92376 1.01336 0.98488 1.22374 1.00702 1.01650 0.78394 1.48321 1.25595 1.51238 1.09835 1.19669 0.83331 0.77966 0.85477 1.90685 1.74210 1.62349 1.17097 1.23188 0.97096 1.02840 1.02031 1.84730 1.28981 1.66002 1.15295 1.22429 1.10618 1.37598 0.96841 0.91839 1.25553 0.93645 0.93716 1.03053 1.70011 1.12995 1.33959 1.38363 0.85878 0.81358 0.79210 0.79994 1.18749 1.18204 1.16135 1.22182 0.84496 0.96537 0.97362 0.84271 0.86592 0.90878 0.88149 0.94469 0.90651 0.91838 0.89081 0.87217 0.89844 0.90267 0.86939 0.87177 0.91334 0.91074 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 13.92 67.62 0.94 -0.18 16 2 C -0.08 -0.77 4.85 25.48 0.12 -0.65 16 3 Cl -0.10 -1.45 28.99 -2.72 -0.08 -1.53 16 4 C 0.09 0.82 5.17 85.56 0.44 1.26 16 5 N -0.53 -6.88 4.65 -893.45 -4.16 -11.03 16 6 C 0.02 0.26 9.18 127.69 1.17 1.43 16 7 C 0.08 1.17 2.71 46.30 0.13 1.29 16 8 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 9 C -0.11 -1.34 5.41 31.78 0.17 -1.17 16 10 C 0.09 1.62 6.48 86.73 0.56 2.19 16 11 N -0.62 -16.29 3.33 -811.82 -2.70 -18.99 16 12 C 0.55 20.11 7.87 87.66 0.69 20.80 16 13 O -0.56 -25.43 16.12 -3.04 -0.05 -25.48 16 14 C -0.10 -3.93 5.35 71.24 0.38 -3.55 16 15 S -0.18 -9.09 18.55 -56.49 -1.05 -10.14 16 16 C -0.53 -30.86 10.04 67.96 0.68 -30.17 16 17 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16 18 C 0.05 2.70 5.50 84.86 0.47 3.17 16 19 N -0.92 -55.77 13.97 21.65 0.30 -55.47 16 20 Si 0.91 45.28 27.74 68.60 1.90 47.18 16 21 H -0.26 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 23 H -0.24 -11.78 6.74 99.48 0.67 -11.11 16 24 C 0.12 2.61 5.28 86.85 0.46 3.07 16 25 H 0.14 0.43 7.84 -2.91 -0.02 0.40 16 26 H 0.12 0.74 8.06 -2.91 -0.02 0.72 16 27 H 0.07 0.46 7.77 -2.38 -0.02 0.44 16 28 H 0.10 0.81 6.81 -2.39 -0.02 0.79 16 29 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.88 7.09 -2.39 -0.02 0.87 16 31 H 0.06 0.95 7.06 -2.39 -0.02 0.94 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.11 0.76 7.88 -2.38 -0.02 0.75 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 37 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 38 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.06 1.58 7.89 -2.39 -0.02 1.56 16 Total: -1.00 -73.77 357.93 1.37 -72.40 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 0.98 Total: 5.56 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 6.22 Total: -2.51 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -6.55 Total: -85.50 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.05 Total: -25.48 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.05 Total: -10.14 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -73.77 1.37 -72.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188958877.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.805 kcal (2) G-P(sol) polarization free energy of solvation -73.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds