Wall clock time and date at job start Tue Mar 31 2020 12:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35858 * 116.99920 * 2 1 4 4 C 1.38547 * 120.12201 * 0.21503 * 3 2 1 5 5 C 1.38212 * 120.06935 * 180.25177 * 4 3 2 6 6 C 1.50702 * 119.84347 * 179.76258 * 5 4 3 7 7 O 1.42902 * 109.46790 * 270.02120 * 6 5 4 8 8 C 1.38390 * 120.31113 * 359.79052 * 5 4 3 9 9 C 1.38006 * 120.24296 * 359.97156 * 8 5 4 10 10 C 1.39346 * 119.92147 * 0.02562 * 9 8 5 11 11 C 1.48237 * 120.15035 * 179.97438 * 10 9 8 12 12 C 1.39320 * 120.13551 * 65.25113 * 11 10 9 13 13 C 1.37973 * 119.96171 * 180.24968 * 12 11 10 14 14 C 1.38673 * 120.24785 * 359.47493 * 13 12 11 15 15 F 1.35106 * 119.86119 * 180.25421 * 14 13 12 16 16 C 1.38334 * 120.27975 * 0.27156 * 14 13 12 17 17 C 1.38702 * 120.02538 * 0.02562 * 16 14 13 18 18 O 1.35676 * 120.12209 * 179.97438 * 17 16 14 19 19 C 1.34813 * 116.99716 * 354.40188 * 18 17 16 20 20 H 1.07993 * 120.00626 * 5.08281 * 19 18 17 21 21 C 1.38647 * 119.99652 * 185.08074 * 19 18 17 22 22 N 1.31561 * 120.00035 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99788 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46800 * 90.00313 * 23 21 19 25 25 H 1.48506 * 109.46811 * 209.99854 * 23 21 19 26 26 H 1.48497 * 109.47378 * 330.00257 * 23 21 19 27 27 H 1.08998 * 109.46957 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46890 * 299.99655 * 1 2 3 29 29 H 1.08997 * 109.47169 * 60.00036 * 1 2 3 30 30 H 1.07996 * 119.96601 * 359.97438 * 4 3 2 31 31 H 1.08993 * 109.47170 * 30.02195 * 6 5 4 32 32 H 1.08994 * 109.46996 * 150.02557 * 6 5 4 33 33 H 0.96709 * 113.99632 * 179.97438 * 7 6 5 34 34 H 1.08002 * 119.87649 * 179.97438 * 8 5 4 35 35 H 1.07999 * 120.03488 * 179.97438 * 9 8 5 36 36 H 1.07997 * 120.01887 * 0.02562 * 12 11 10 37 37 H 1.08001 * 119.87787 * 179.74666 * 13 12 11 38 38 H 1.07996 * 119.99065 * 179.97438 * 16 14 13 39 39 H 0.96992 * 120.00008 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 1.2937 2.3741 0.0045 5 6 1.9222 3.6050 -0.0008 6 6 1.0991 4.8673 -0.0013 7 8 0.8341 5.2626 -1.3487 8 6 3.3039 3.6837 -0.0062 9 6 4.0657 2.5329 -0.0058 10 6 3.4423 1.2867 -0.0004 11 6 4.2556 0.0473 -0.0005 12 6 5.0652 -0.2581 1.0914 13 6 5.8246 -1.4100 1.0853 14 6 5.7774 -2.2721 0.0001 15 9 6.5204 -3.4005 0.0046 16 6 4.9731 -1.9814 -1.0871 17 6 4.2095 -0.8235 -1.0958 18 8 3.4203 -0.5363 -2.1614 19 6 3.5104 -1.3556 -3.2282 20 1 4.1263 -2.2413 -3.1784 21 6 2.8122 -1.0612 -4.3892 22 7 2.8996 -1.8609 -5.4302 23 14 1.7462 0.4705 -4.4750 24 1 2.5580 1.6114 -4.9694 25 1 0.6110 0.2321 -5.4023 26 1 1.2222 0.7854 -3.1217 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 0.2151 2.3192 0.0076 31 1 0.1571 4.6871 0.5165 32 1 1.6481 5.6592 0.5083 33 1 0.3069 6.0697 -1.4254 34 1 3.7877 4.6492 -0.0107 35 1 5.1437 2.5982 -0.0104 36 1 5.1010 0.4082 1.9405 37 1 6.4549 -1.6433 1.9307 38 1 4.9402 -2.6559 -1.9299 39 1 2.4115 -1.6548 -6.2425 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204788317.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:58 Heat of formation + Delta-G solvation = -103.210718 kcal Electronic energy + Delta-G solvation = -26751.288330 eV Core-core repulsion = 22732.880995 eV Total energy + Delta-G solvation = -4018.407334 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.29689 -40.13319 -38.91256 -37.64558 -36.64095 -36.06461 -32.54528 -32.30232 -29.94631 -29.60854 -28.83928 -27.27950 -25.61910 -25.09083 -22.37922 -21.87580 -21.49562 -20.60160 -18.11402 -17.82842 -17.55917 -17.30024 -16.22676 -15.99718 -15.52662 -15.38028 -15.12024 -14.99393 -14.59109 -14.39426 -14.06661 -13.98395 -13.72783 -13.38675 -13.24200 -13.07785 -12.90083 -12.34663 -12.21511 -12.06431 -11.70453 -11.51546 -11.36303 -11.11196 -10.78919 -10.73453 -10.69802 -10.52632 -10.23718 -10.18450 -9.55632 -8.92350 -8.67858 -8.15442 -7.81474 -7.34242 -6.47568 -4.13072 1.33152 1.73068 1.92211 2.11157 3.19963 3.27571 3.42346 3.62931 3.84646 4.21413 4.26733 4.47281 4.67492 4.88009 4.93589 4.98932 5.04542 5.07095 5.23332 5.28668 5.30209 5.42377 5.46266 5.56304 5.70548 5.73174 5.73992 5.89643 6.07861 6.13262 6.28880 6.42556 6.61227 6.71377 6.78811 6.84811 6.88920 7.06167 7.07915 7.50628 7.50881 7.69993 7.78595 7.95057 8.87263 9.48218 10.59116 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.010147 B = 0.006367 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.653784 B = 4396.731941 C = 6126.221221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.292 6.292 3 C 0.149 3.851 4 C -0.193 4.193 5 C -0.068 4.068 6 C 0.120 3.880 7 O -0.564 6.564 8 C -0.141 4.141 9 C -0.076 4.076 10 C -0.038 4.038 11 C -0.131 4.131 12 C -0.034 4.034 13 C -0.243 4.243 14 C 0.143 3.857 15 F -0.150 7.150 16 C -0.261 4.261 17 C 0.205 3.795 18 O -0.188 6.188 19 C -0.390 4.390 20 H 0.108 0.892 21 C 0.070 3.930 22 N -0.872 5.872 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.255 1.255 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.124 0.876 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.376 0.624 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.146 0.854 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.693 11.009 13.016 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.204 6.204 3 C 0.103 3.897 4 C -0.211 4.211 5 C -0.068 4.068 6 C 0.043 3.957 7 O -0.370 6.370 8 C -0.159 4.159 9 C -0.094 4.094 10 C -0.038 4.038 11 C -0.133 4.133 12 C -0.053 4.053 13 C -0.263 4.263 14 C 0.124 3.876 15 F -0.129 7.129 16 C -0.281 4.281 17 C 0.150 3.850 18 O -0.091 6.091 19 C -0.465 4.465 20 H 0.125 0.875 21 C -0.135 4.135 22 N -0.509 5.509 23 Si 0.725 3.275 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.179 1.179 27 H 0.117 0.883 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.142 0.858 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.223 0.777 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.163 0.837 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.500 10.347 12.581 16.661 hybrid contribution -0.909 0.794 -0.255 1.233 sum -4.408 11.141 12.327 17.190 Atomic orbital electron populations 1.23025 0.79299 1.03827 1.00608 1.86220 1.20422 1.26062 1.87738 1.19020 0.91622 0.84247 0.94775 1.20947 0.99638 0.91715 1.08845 1.19282 0.93706 0.93100 1.00704 1.20958 0.97280 0.93731 0.83731 1.86660 1.76284 1.47645 1.26367 1.20743 0.92769 0.98242 1.04148 1.21039 0.99829 0.90415 0.98114 1.17928 0.89237 0.93023 1.03653 1.17639 1.04499 0.95809 0.95341 1.20479 0.93559 0.95374 0.95854 1.20469 1.08199 0.98060 0.99574 1.17517 0.91884 0.82885 0.95297 1.91427 1.74937 1.49614 1.96874 1.21087 1.04399 1.01705 1.00945 1.18670 0.87943 0.90778 0.87615 1.83627 1.53002 1.50727 1.21698 1.20811 1.31028 1.05778 0.88887 0.87492 1.24431 0.97001 0.98440 0.93581 1.69647 1.41094 1.36973 1.03192 0.86259 0.79947 0.82023 0.79301 1.19710 1.20803 1.17912 0.88345 0.93276 0.92874 0.85785 0.93120 0.92776 0.77746 0.86117 0.85133 0.85766 0.86059 0.83691 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.29 -5.70 9.46 -19.29 -0.18 -5.88 16 3 C 0.15 2.84 6.37 -38.86 -0.25 2.59 16 4 C -0.19 -3.17 8.68 -39.48 -0.34 -3.51 16 5 C -0.07 -1.01 5.51 -104.57 -0.58 -1.59 16 6 C 0.12 1.36 7.16 36.01 0.26 1.61 16 7 O -0.56 -7.06 13.64 -35.23 -0.48 -7.54 16 8 C -0.14 -2.08 9.68 -39.61 -0.38 -2.46 16 9 C -0.08 -1.23 9.74 -39.25 -0.38 -1.62 16 10 C -0.04 -0.72 4.95 -104.77 -0.52 -1.24 16 11 C -0.13 -2.64 4.96 -104.72 -0.52 -3.16 16 12 C -0.03 -0.59 9.73 -39.28 -0.38 -0.97 16 13 C -0.24 -4.21 10.01 -39.52 -0.40 -4.61 16 14 C 0.14 2.85 7.29 -39.39 -0.29 2.57 16 15 F -0.15 -2.90 17.26 2.25 0.04 -2.86 16 16 C -0.26 -5.87 9.14 -39.37 -0.36 -6.23 16 17 C 0.20 4.78 6.33 -38.75 -0.25 4.54 16 18 O -0.19 -4.94 7.55 0.33 0.00 -4.94 16 19 C -0.39 -10.97 9.94 30.88 0.31 -10.67 16 20 H 0.11 3.09 5.44 -52.49 -0.29 2.80 16 21 C 0.07 1.97 5.49 -17.52 -0.10 1.87 16 22 N -0.87 -25.20 13.96 55.48 0.77 -24.43 16 23 Si 0.90 22.29 28.62 -169.99 -4.86 17.43 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 27 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.05 0.57 7.65 -51.93 -0.40 0.17 16 29 H 0.05 0.79 7.67 -51.93 -0.40 0.39 16 30 H 0.12 1.77 6.30 -52.49 -0.33 1.44 16 31 H 0.05 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.38 2.54 9.12 45.56 0.42 2.96 16 34 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.15 3.43 5.64 -52.49 -0.30 3.14 16 39 H 0.28 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -32.97 343.28 -6.10 -39.07 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -3.38 Total: 5.45 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -3.18 Total: -21.47 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: 0.77 Total: -24.43 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.66 Total: -18.36 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.86 Total: 17.43 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.97 -6.10 -39.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204788317.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.144 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds