Wall clock time and date at job start Tue Mar 31 2020 12:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35858 * 116.99920 * 2 1 4 4 C 1.38547 * 120.12201 * 0.21503 * 3 2 1 5 5 C 1.38212 * 120.06935 * 180.25177 * 4 3 2 6 6 C 1.50702 * 119.84347 * 179.76258 * 5 4 3 7 7 O 1.42902 * 109.46790 * 270.02120 * 6 5 4 8 8 C 1.38390 * 120.31113 * 359.79052 * 5 4 3 9 9 C 1.38006 * 120.24296 * 359.97156 * 8 5 4 10 10 C 1.39346 * 119.92147 * 0.02562 * 9 8 5 11 11 C 1.48237 * 120.15035 * 179.97438 * 10 9 8 12 12 C 1.39320 * 120.13551 * 65.25113 * 11 10 9 13 13 C 1.37973 * 119.96171 * 180.24968 * 12 11 10 14 14 C 1.38673 * 120.24785 * 359.47493 * 13 12 11 15 15 F 1.35106 * 119.86119 * 180.25421 * 14 13 12 16 16 C 1.38334 * 120.27975 * 0.27156 * 14 13 12 17 17 C 1.38702 * 120.02538 * 0.02562 * 16 14 13 18 18 O 1.35676 * 120.12209 * 179.97438 * 17 16 14 19 19 C 1.34813 * 116.99716 * 354.40188 * 18 17 16 20 20 H 1.07993 * 120.00626 * 5.08281 * 19 18 17 21 21 C 1.38647 * 119.99652 * 185.08074 * 19 18 17 22 22 N 1.31561 * 120.00035 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99788 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46800 * 90.00313 * 23 21 19 25 25 H 1.48506 * 109.46811 * 209.99854 * 23 21 19 26 26 H 1.48497 * 109.47378 * 330.00257 * 23 21 19 27 27 H 1.08998 * 109.46957 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46890 * 299.99655 * 1 2 3 29 29 H 1.08997 * 109.47169 * 60.00036 * 1 2 3 30 30 H 1.07996 * 119.96601 * 359.97438 * 4 3 2 31 31 H 1.08993 * 109.47170 * 30.02195 * 6 5 4 32 32 H 1.08994 * 109.46996 * 150.02557 * 6 5 4 33 33 H 0.96709 * 113.99632 * 179.97438 * 7 6 5 34 34 H 1.08002 * 119.87649 * 179.97438 * 8 5 4 35 35 H 1.07999 * 120.03488 * 179.97438 * 9 8 5 36 36 H 1.07997 * 120.01887 * 0.02562 * 12 11 10 37 37 H 1.08001 * 119.87787 * 179.74666 * 13 12 11 38 38 H 1.07996 * 119.99065 * 179.97438 * 16 14 13 39 39 H 0.96992 * 120.00008 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 1.2937 2.3741 0.0045 5 6 1.9222 3.6050 -0.0008 6 6 1.0991 4.8673 -0.0013 7 8 0.8341 5.2626 -1.3487 8 6 3.3039 3.6837 -0.0062 9 6 4.0657 2.5329 -0.0058 10 6 3.4423 1.2867 -0.0004 11 6 4.2556 0.0473 -0.0005 12 6 5.0652 -0.2581 1.0914 13 6 5.8246 -1.4100 1.0853 14 6 5.7774 -2.2721 0.0001 15 9 6.5204 -3.4005 0.0046 16 6 4.9731 -1.9814 -1.0871 17 6 4.2095 -0.8235 -1.0958 18 8 3.4203 -0.5363 -2.1614 19 6 3.5104 -1.3556 -3.2282 20 1 4.1263 -2.2413 -3.1784 21 6 2.8122 -1.0612 -4.3892 22 7 2.8996 -1.8609 -5.4302 23 14 1.7462 0.4705 -4.4750 24 1 2.5580 1.6114 -4.9694 25 1 0.6110 0.2321 -5.4023 26 1 1.2222 0.7854 -3.1217 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 0.2151 2.3192 0.0076 31 1 0.1571 4.6871 0.5165 32 1 1.6481 5.6592 0.5083 33 1 0.3069 6.0697 -1.4254 34 1 3.7877 4.6492 -0.0107 35 1 5.1437 2.5982 -0.0104 36 1 5.1010 0.4082 1.9405 37 1 6.4549 -1.6433 1.9307 38 1 4.9402 -2.6559 -1.9299 39 1 2.4115 -1.6548 -6.2425 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204788317.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:57 Heat of formation + Delta-G solvation = -125.593943 kcal Electronic energy + Delta-G solvation = -26752.258939 eV Core-core repulsion = 22732.880995 eV Total energy + Delta-G solvation = -4019.377944 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.88566 -41.49628 -40.50711 -38.77206 -38.20595 -37.18022 -34.52792 -33.68514 -31.21383 -31.15265 -30.24841 -28.41777 -27.42932 -26.41473 -23.81597 -23.26466 -22.95111 -21.93835 -20.03654 -19.51370 -18.63302 -18.36065 -17.53129 -17.43341 -17.11317 -16.93243 -16.59868 -16.49817 -15.89717 -15.73949 -15.53911 -15.36419 -15.31390 -14.99817 -14.78213 -14.27868 -14.25627 -14.10206 -13.70028 -13.39551 -13.06762 -12.89537 -12.71483 -12.59694 -12.35673 -12.30691 -12.19830 -11.95720 -11.70381 -11.49405 -10.97785 -10.96222 -9.99372 -9.65496 -9.25698 -8.86361 -8.57073 -6.27312 -0.01039 0.40492 0.51523 0.55663 1.22312 1.27476 1.44800 2.20357 2.42874 2.56412 2.71903 2.92008 3.01304 3.36033 3.55260 3.76485 3.89316 3.99430 4.09525 4.14578 4.19174 4.26608 4.32009 4.38738 4.45176 4.53105 4.63667 4.65445 4.70991 4.75763 4.94385 5.07251 5.23241 5.26942 5.34914 5.36194 5.50100 5.59622 5.67489 5.80635 5.88828 6.08668 6.53231 6.77791 6.95017 7.51770 8.54557 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.010147 B = 0.006367 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.653784 B = 4396.731941 C = 6126.221221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.328 6.328 3 C 0.126 3.874 4 C -0.202 4.202 5 C -0.071 4.071 6 C 0.120 3.880 7 O -0.593 6.593 8 C -0.141 4.141 9 C -0.077 4.077 10 C -0.076 4.076 11 C -0.121 4.121 12 C -0.025 4.025 13 C -0.210 4.210 14 C 0.130 3.870 15 F -0.148 7.148 16 C -0.282 4.282 17 C 0.174 3.826 18 O -0.212 6.212 19 C -0.397 4.397 20 H 0.080 0.920 21 C 0.023 3.977 22 N -0.917 5.917 23 Si 0.959 3.041 24 H -0.273 1.273 25 H -0.265 1.265 26 H -0.263 1.263 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.045 0.955 30 H 0.139 0.861 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.400 0.600 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.171 0.829 37 H 0.165 0.835 38 H 0.116 0.884 39 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.734 14.227 16.125 21.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.241 6.241 3 C 0.080 3.920 4 C -0.221 4.221 5 C -0.071 4.071 6 C 0.043 3.957 7 O -0.403 6.403 8 C -0.159 4.159 9 C -0.095 4.095 10 C -0.076 4.076 11 C -0.122 4.122 12 C -0.042 4.042 13 C -0.229 4.229 14 C 0.111 3.889 15 F -0.127 7.127 16 C -0.302 4.302 17 C 0.122 3.878 18 O -0.117 6.117 19 C -0.473 4.473 20 H 0.097 0.903 21 C -0.177 4.177 22 N -0.557 5.557 23 Si 0.782 3.218 24 H -0.198 1.198 25 H -0.190 1.190 26 H -0.187 1.187 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.157 0.843 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.250 0.750 34 H 0.171 0.829 35 H 0.167 0.833 36 H 0.188 0.812 37 H 0.183 0.817 38 H 0.134 0.866 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.534 13.577 15.731 21.078 hybrid contribution -0.759 -0.169 -0.905 1.193 sum -4.292 13.408 14.826 20.445 Atomic orbital electron populations 1.23247 0.77480 1.04924 1.01697 1.86155 1.22607 1.27182 1.88133 1.19322 0.92048 0.84802 0.95820 1.21225 1.00476 0.91651 1.08761 1.19851 0.94507 0.94191 0.98554 1.21065 0.98145 0.92764 0.83718 1.86577 1.77137 1.49467 1.27093 1.21152 0.92890 0.99060 1.02766 1.21309 1.00960 0.89908 0.97284 1.18130 0.89559 0.93390 1.06567 1.18067 1.04010 0.95631 0.94497 1.21034 0.91675 0.95602 0.95924 1.21001 1.06549 0.96320 0.98992 1.17655 0.91959 0.83736 0.95539 1.91429 1.74740 1.49633 1.96868 1.21057 1.06005 1.01677 1.01483 1.19212 0.88547 0.91937 0.88082 1.83600 1.55340 1.50785 1.22024 1.20702 1.30835 1.05557 0.90211 0.90251 1.25087 0.98284 1.01040 0.93255 1.69718 1.43138 1.38846 1.03966 0.85378 0.78813 0.78687 0.78879 1.19787 1.18970 1.18741 0.87412 0.90150 0.93650 0.84308 0.91150 0.89805 0.74972 0.82947 0.83326 0.81157 0.81727 0.86582 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 9.81 113.37 1.11 1.72 16 2 O -0.33 -12.89 9.46 -91.95 -0.87 -13.76 16 3 C 0.13 4.69 6.37 22.73 0.14 4.83 16 4 C -0.20 -6.29 8.68 22.34 0.19 -6.09 16 5 C -0.07 -1.90 5.51 -19.83 -0.11 -2.01 16 6 C 0.12 2.20 7.16 71.24 0.51 2.71 16 7 O -0.59 -12.79 13.64 -148.98 -2.03 -14.82 16 8 C -0.14 -3.66 9.68 22.25 0.22 -3.44 16 9 C -0.08 -2.30 9.74 22.48 0.22 -2.08 16 10 C -0.08 -2.79 4.95 -19.96 -0.10 -2.89 16 11 C -0.12 -4.75 4.96 -19.93 -0.10 -4.84 16 12 C -0.02 -0.75 9.73 22.47 0.22 -0.53 16 13 C -0.21 -6.51 10.01 22.31 0.22 -6.29 16 14 C 0.13 5.11 7.29 22.40 0.16 5.28 16 15 F -0.15 -5.66 17.26 44.97 0.78 -4.88 16 16 C -0.28 -13.32 9.14 22.40 0.20 -13.12 16 17 C 0.17 8.39 6.33 22.81 0.14 8.54 16 18 O -0.21 -11.73 7.55 -21.75 -0.16 -11.90 16 19 C -0.40 -23.92 9.94 67.92 0.68 -23.24 16 20 H 0.08 5.05 5.44 -2.91 -0.02 5.04 16 21 C 0.02 1.35 5.49 84.83 0.47 1.82 16 22 N -0.92 -55.75 13.96 21.61 0.30 -55.45 16 23 Si 0.96 47.75 28.62 68.60 1.96 49.71 16 24 H -0.27 -13.39 7.11 99.48 0.71 -12.69 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.26 -13.27 7.11 99.48 0.71 -12.57 16 27 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 28 H 0.08 1.74 7.65 -2.39 -0.02 1.72 16 29 H 0.04 1.35 7.67 -2.39 -0.02 1.33 16 30 H 0.14 3.70 6.30 -2.91 -0.02 3.69 16 31 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 32 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 33 H 0.40 3.99 9.12 -74.05 -0.68 3.32 16 34 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 35 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 36 H 0.17 3.73 8.06 -2.91 -0.02 3.71 16 37 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 38 H 0.12 6.07 5.64 -2.91 -0.02 6.06 16 39 H 0.29 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -76.91 343.28 4.59 -72.32 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.44 Total: 18.41 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 4.18 Total: -39.63 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.30 Total: -55.45 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -3.07 Total: -40.48 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.78 Total: -4.88 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.96 Total: 49.71 kcal Total: -76.91 4.59 -72.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204788317.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.279 kcal (2) G-P(sol) polarization free energy of solvation -76.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds