Wall clock time and date at job start Tue Mar 31 2020 11:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99705 * 2 1 4 4 H 1.48497 * 109.47191 * 5.29856 * 3 2 1 5 5 H 1.48499 * 109.47350 * 245.29214 * 3 2 1 6 6 H 1.48503 * 109.46994 * 125.29395 * 3 2 1 7 7 C 1.38810 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99904 * 345.60916 * 7 2 1 9 9 N 1.36931 * 120.00124 * 165.60610 * 7 2 1 10 10 C 1.47025 * 125.64960 * 348.98007 * 9 7 2 11 11 C 1.54317 * 107.27277 * 181.02200 * 10 9 7 12 12 C 1.55164 * 102.94423 * 22.18671 * 11 10 9 13 13 H 1.09000 * 110.99823 * 82.57815 * 12 11 10 14 14 O 1.42895 * 111.00366 * 206.38652 * 12 11 10 15 15 C 1.35281 * 117.00311 * 209.99883 * 14 12 11 16 16 N 1.30755 * 125.02438 * 359.70228 * 15 14 12 17 17 C 1.35911 * 109.61855 * 179.82897 * 16 15 14 18 18 C 1.39710 * 133.44321 * 180.09677 * 17 16 15 19 19 C 1.37664 * 119.77536 * 180.33443 * 18 17 16 20 20 C 1.38723 * 120.50119 * 0.02562 * 19 18 17 21 21 N 1.48034 * 119.77884 * 179.97438 * 20 19 18 22 22 O 1.21802 * 119.99802 * 180.02562 * 21 20 19 23 23 O 1.21797 * 119.99861 * 0.02562 * 21 20 19 24 24 C 1.37930 * 120.43850 * 0.02562 * 20 19 18 25 25 C 1.38689 * 119.84457 * 359.97438 * 24 20 19 26 26 N 1.36381 * 125.03906 * 180.02562 * 15 14 12 27 27 H 0.97009 * 126.36192 * 359.96472 * 26 15 14 28 28 C 1.47424 * 125.65002 * 168.66454 * 9 7 2 29 29 H 0.97001 * 119.99278 * 174.92732 * 1 2 3 30 30 H 1.08997 * 109.87719 * 300.43423 * 10 9 7 31 31 H 1.08998 * 109.88510 * 61.59599 * 10 9 7 32 32 H 1.08999 * 110.72759 * 140.55366 * 11 10 9 33 33 H 1.09005 * 110.71764 * 263.82766 * 11 10 9 34 34 H 1.08007 * 120.11008 * 0.31507 * 18 17 16 35 35 H 1.08008 * 119.75001 * 179.97438 * 19 18 17 36 36 H 1.08000 * 120.08078 * 179.97438 * 24 20 19 37 37 H 1.09001 * 110.36978 * 274.75543 * 28 9 7 38 38 H 1.09003 * 110.36379 * 37.07331 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2903 2.7435 0.1293 5 1 3.0045 1.7540 -1.2719 6 1 3.1982 1.6420 1.1428 7 6 2.0103 -1.2021 0.0005 8 1 1.4958 -2.1226 0.2334 9 7 3.3474 -1.2208 -0.2942 10 6 4.1190 -0.0976 -0.8462 11 6 5.5699 -0.5878 -1.0362 12 6 5.4088 -2.1293 -1.1113 13 1 5.1277 -2.4441 -2.1163 14 8 6.6021 -2.7902 -0.6856 15 6 6.8698 -3.9936 -1.2426 16 7 6.1200 -4.5932 -2.1303 17 6 6.6842 -5.7799 -2.4775 18 6 6.3162 -6.7960 -3.3628 19 6 7.1138 -7.9104 -3.4942 20 6 8.2804 -8.0325 -2.7536 21 7 9.1259 -9.2379 -2.9071 22 8 10.1508 -9.3494 -2.2584 23 8 8.7967 -10.1180 -3.6819 24 6 8.6572 -7.0387 -1.8744 25 6 7.8658 -5.9091 -1.7293 26 7 7.9584 -4.7639 -0.9569 27 1 8.6662 -4.5491 -0.3292 28 6 4.2531 -2.3685 -0.1046 29 1 -0.4849 -0.8368 -0.0743 30 1 3.7006 0.2030 -1.8067 31 1 4.0994 0.7424 -0.1518 32 1 5.9904 -0.1984 -1.9633 33 1 6.1870 -0.3057 -0.1831 34 1 5.4088 -6.7078 -3.9420 35 1 6.8287 -8.6959 -4.1785 36 1 9.5664 -7.1400 -1.3004 37 1 4.6339 -2.3866 0.9165 38 1 3.7373 -3.3008 -0.3346 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227743952.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:12 Heat of formation + Delta-G solvation = 84.482240 kcal Electronic energy + Delta-G solvation = -25442.109871 eV Core-core repulsion = 21484.054227 eV Total energy + Delta-G solvation = -3958.055644 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -42.94103 -42.24283 -39.65068 -37.87496 -36.79824 -36.69839 -33.92704 -32.63915 -31.02418 -30.52296 -29.74400 -28.44279 -26.33943 -24.47230 -23.49340 -22.72636 -22.33918 -21.14391 -20.52793 -19.76392 -19.43345 -18.65043 -17.91106 -17.75855 -17.47874 -16.78504 -16.58907 -15.60297 -15.34752 -15.11289 -14.71164 -14.32068 -14.21416 -13.69447 -13.55463 -12.86594 -12.68546 -12.48965 -12.46304 -12.22843 -11.80370 -11.63298 -11.48307 -11.46940 -11.37036 -11.25057 -10.93882 -10.56691 -10.50821 -10.17473 -9.46374 -9.16631 -9.12478 -8.86614 -8.74854 -7.21315 -6.42554 -3.36741 -0.53138 0.50028 0.98423 1.00375 1.49513 2.14046 3.03746 3.12235 3.30183 3.39565 3.54801 3.62790 3.99018 4.17804 4.35439 4.45080 4.51293 4.66553 4.77394 4.78450 5.00394 5.06705 5.16072 5.21667 5.35285 5.38638 5.49650 5.63410 5.69577 5.79537 5.87965 6.00669 6.14880 6.18131 6.28403 6.45295 6.51754 6.90761 7.24710 7.40963 7.49067 8.21014 8.90861 9.39777 10.04906 11.08039 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.034631 B = 0.002464 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.329306 B =11361.287960 C =11858.176999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.019 4.019 3 Si 1.069 2.931 4 H -0.299 1.299 5 H -0.285 1.285 6 H -0.297 1.297 7 C -0.326 4.326 8 H 0.081 0.919 9 N -0.606 5.606 10 C 0.112 3.888 11 C -0.124 4.124 12 C 0.081 3.919 13 H 0.110 0.890 14 O -0.280 6.280 15 C 0.514 3.486 16 N -0.529 5.529 17 C 0.133 3.867 18 C -0.070 4.070 19 C -0.064 4.064 20 C -0.047 4.047 21 N 0.037 4.963 22 O -0.171 6.171 23 O -0.159 6.159 24 C -0.022 4.022 25 C 0.035 3.965 26 N -0.585 5.585 27 H 0.434 0.566 28 C 0.125 3.875 29 H 0.263 0.737 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.033 0.967 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.398 -11.222 -5.293 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.219 4.219 3 Si 0.903 3.097 4 H -0.227 1.227 5 H -0.212 1.212 6 H -0.226 1.226 7 C -0.453 4.453 8 H 0.098 0.902 9 N -0.336 5.336 10 C -0.013 4.013 11 C -0.162 4.162 12 C 0.024 3.976 13 H 0.128 0.872 14 O -0.181 6.181 15 C 0.212 3.788 16 N -0.267 5.267 17 C 0.011 3.989 18 C -0.090 4.090 19 C -0.086 4.086 20 C -0.133 4.133 21 N 0.555 4.445 22 O -0.385 6.385 23 O -0.375 6.375 24 C -0.044 4.044 25 C -0.073 4.073 26 N -0.208 5.208 27 H 0.275 0.725 28 C -0.002 4.002 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.174 0.826 35 H 0.177 0.823 36 H 0.172 0.828 37 H 0.051 0.949 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 18.018 -8.452 -5.240 20.580 hybrid contribution 1.509 -2.074 0.741 2.669 sum 19.526 -10.526 -4.500 22.635 Atomic orbital electron populations 1.70894 1.05644 1.29410 1.50493 1.25882 0.96489 1.00931 0.98581 0.83864 0.73327 0.76276 0.76260 1.22696 1.21237 1.22550 1.20172 0.81143 0.96305 1.47644 0.90174 1.44655 1.05794 1.08117 1.74989 1.22060 0.88856 0.92294 0.98088 1.22810 0.98809 0.91606 1.03009 1.24238 0.80605 0.91753 1.00984 0.87178 1.85960 1.45932 1.24463 1.61740 1.20849 0.83160 0.86297 0.88519 1.71060 1.28982 1.08343 1.18327 1.19167 0.90902 0.92994 0.95802 1.20206 1.00710 0.90188 0.97897 1.20667 0.91130 0.98732 0.98084 1.20415 0.96598 0.88933 1.07315 1.43442 1.00512 1.01759 0.98787 1.94536 1.13743 1.85123 1.45056 1.94541 1.76599 1.33715 1.32678 1.19410 0.99396 0.89115 0.96463 1.17998 0.99944 0.90003 0.99405 1.42319 1.23298 1.15796 1.39371 0.72547 1.21883 0.89746 0.93097 0.95471 0.92666 0.92724 0.94505 0.90034 0.90011 0.82552 0.82297 0.82816 0.94885 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.39 13.70 55.49 0.76 -27.63 16 2 C -0.02 -0.55 5.50 -17.43 -0.10 -0.64 16 3 Si 1.07 25.64 24.53 -169.99 -4.17 21.47 16 4 H -0.30 -7.38 7.11 56.52 0.40 -6.97 16 5 H -0.28 -6.11 5.43 56.52 0.31 -5.80 16 6 H -0.30 -6.84 6.84 56.52 0.39 -6.45 16 7 C -0.33 -9.07 10.56 -15.06 -0.16 -9.23 16 8 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 9 N -0.61 -14.22 3.32 -169.94 -0.56 -14.78 16 10 C 0.11 2.25 4.61 -3.07 -0.01 2.23 16 11 C -0.12 -1.86 6.68 -24.90 -0.17 -2.03 16 12 C 0.08 1.24 3.45 -24.46 -0.08 1.15 16 13 H 0.11 1.73 7.22 -51.93 -0.37 1.35 16 14 O -0.28 -3.66 10.00 -17.54 -0.18 -3.83 16 15 C 0.51 6.22 8.86 -88.93 -0.79 5.44 16 16 N -0.53 -7.08 10.09 -12.24 -0.12 -7.20 16 17 C 0.13 1.49 7.22 -84.68 -0.61 0.88 16 18 C -0.07 -0.62 10.10 -39.24 -0.40 -1.02 16 19 C -0.06 -0.53 9.52 -39.61 -0.38 -0.91 16 20 C -0.05 -0.45 6.85 -79.87 -0.55 -1.00 16 21 N 0.04 0.42 4.45 34.00 0.15 0.57 16 22 O -0.17 -2.05 18.43 -29.46 -0.54 -2.60 16 23 O -0.16 -1.90 18.43 -29.46 -0.54 -2.45 16 24 C -0.02 -0.19 9.56 -39.53 -0.38 -0.56 16 25 C 0.03 0.33 7.30 -83.88 -0.61 -0.28 16 26 N -0.59 -5.14 6.26 -11.91 -0.07 -5.22 16 27 H 0.43 2.33 8.96 -40.82 -0.37 1.97 16 28 C 0.12 2.40 6.98 -2.41 -0.02 2.38 16 29 H 0.26 8.01 8.73 -40.82 -0.36 7.65 16 30 H 0.05 1.14 6.79 -51.93 -0.35 0.78 16 31 H 0.04 0.78 3.82 -51.93 -0.20 0.59 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.16 1.14 8.06 -52.48 -0.42 0.71 16 35 H 0.16 1.03 7.59 -52.48 -0.40 0.63 16 36 H 0.15 1.00 7.59 -52.49 -0.40 0.61 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 325.17 15.07 4.90 4.90 Total: -1.00 -32.65 325.17 -8.52 -41.17 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -3.89 Total: -0.83 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -4.25 Total: -3.58 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.15 Total: -54.25 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -1.26 Total: -8.88 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -4.17 Total: 21.47 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.65 -8.52 -41.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227743952.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.649 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds