Wall clock time and date at job start Tue Mar 31 2020 11:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00224 * 2 1 4 4 H 1.48499 * 109.46871 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47106 * 300.00624 * 3 2 1 6 6 H 1.48495 * 109.46616 * 60.00692 * 3 2 1 7 7 C 1.38814 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00093 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47431 * 125.64784 * 359.97438 * 9 7 2 11 11 C 1.54909 * 104.83118 * 155.90734 * 10 9 7 12 12 C 1.55157 * 101.58097 * 37.00913 * 11 10 9 13 13 H 1.08996 * 110.72201 * 82.86220 * 12 11 10 14 14 O 1.42901 * 110.71566 * 205.95334 * 12 11 10 15 15 C 1.35906 * 117.00016 * 207.86997 * 14 12 11 16 16 C 1.38110 * 119.72515 * 354.19890 * 15 14 12 17 17 C 1.39192 * 119.69245 * 179.97438 * 16 15 14 18 18 N 1.37063 * 133.76475 * 179.97438 * 17 16 15 19 19 H 0.96997 * 125.47083 * 0.05344 * 18 17 16 20 20 N 1.39868 * 109.07184 * 180.02562 * 18 17 16 21 21 C 1.30221 * 110.09835 * 0.02562 * 20 18 17 22 22 C 1.40857 * 119.49254 * 0.02562 * 17 16 15 23 23 C 1.39936 * 119.83436 * 359.97344 * 22 17 16 24 24 C 1.36379 * 119.84888 * 359.78232 * 23 22 17 25 25 N 1.48024 * 119.70644 * 180.25402 * 24 23 22 26 26 O 1.21805 * 119.99954 * 0.22010 * 25 24 23 27 27 O 1.21800 * 119.99990 * 180.22289 * 25 24 23 28 28 C 1.47015 * 125.64873 * 180.02562 * 9 7 2 29 29 H 0.97003 * 119.99954 * 359.97438 * 1 2 3 30 30 H 1.09001 * 110.36478 * 37.06672 * 10 9 7 31 31 H 1.08998 * 110.36475 * 274.74704 * 10 9 7 32 32 H 1.09003 * 111.00552 * 278.93463 * 11 10 9 33 33 H 1.08998 * 111.03539 * 155.10223 * 11 10 9 34 34 H 1.07999 * 120.15160 * 359.95852 * 16 15 14 35 35 H 1.08007 * 126.10093 * 179.97438 * 21 20 18 36 36 H 1.07992 * 120.07551 * 180.02562 * 23 22 17 37 37 H 1.09005 * 109.88695 * 61.61104 * 28 9 7 38 38 H 1.08996 * 109.88738 * 300.44075 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5332 0.0005 11 6 -0.4022 -3.9323 -0.6112 12 6 0.7782 -4.7524 -0.0270 13 1 0.5465 -5.0980 0.9804 14 8 1.0968 -5.8559 -0.8772 15 6 1.6485 -6.9494 -0.2883 16 6 1.9854 -6.9095 1.0505 17 6 2.5500 -8.0301 1.6531 18 7 2.9840 -8.3058 2.9236 19 1 2.9574 -7.6910 3.6733 20 7 3.4707 -9.6164 2.9659 21 6 3.3643 -10.1714 1.7927 22 6 2.7709 -9.1917 0.8877 23 6 2.4217 -9.2096 -0.4672 24 6 1.8650 -8.1038 -1.0393 25 7 1.4916 -8.1281 -2.4715 26 8 1.6782 -9.1340 -3.1326 27 8 0.9978 -7.1422 -2.9889 28 6 1.9317 -3.7275 -0.0005 29 1 -0.4850 0.8401 0.0004 30 1 -0.5998 -1.7588 -0.6147 31 1 -0.5266 -2.4868 1.0192 32 1 -0.3534 -3.8981 -1.6996 33 1 -1.3594 -4.3331 -0.2776 34 1 1.8119 -6.0129 1.6270 35 1 3.6621 -11.1771 1.5351 36 1 2.5890 -10.0983 -1.0576 37 1 2.5286 -3.8643 0.9012 38 1 2.5576 -3.8511 -0.8842 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230600503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:20 Heat of formation + Delta-G solvation = 85.844367 kcal Electronic energy + Delta-G solvation = -26343.232161 eV Core-core repulsion = 22385.235583 eV Total energy + Delta-G solvation = -3957.996578 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -42.28575 -41.55084 -39.91679 -37.35517 -36.40474 -35.89995 -33.02435 -32.44965 -30.83611 -29.92825 -29.24067 -27.61235 -26.17176 -24.85971 -23.42706 -22.61986 -22.04578 -20.50407 -20.42099 -19.32874 -18.90128 -18.38006 -17.54656 -17.36292 -17.00287 -16.06295 -15.63807 -15.39561 -14.96316 -14.90874 -14.79521 -14.37128 -13.95526 -13.79234 -12.96043 -12.62842 -12.35172 -12.09682 -11.94484 -11.69069 -11.42439 -11.34981 -11.09986 -11.01341 -10.97673 -10.89841 -10.87410 -10.56344 -10.40731 -10.13658 -9.96229 -9.72964 -9.01225 -8.77564 -8.58579 -6.99708 -5.77555 -3.20616 -0.11087 0.42630 1.37342 1.46451 1.91441 2.11633 2.84285 3.00600 3.33990 3.39903 3.42235 3.81724 4.02367 4.15408 4.32469 4.42698 4.55012 4.85539 4.95703 5.03757 5.08511 5.24489 5.29511 5.39158 5.42496 5.54669 5.73235 5.80468 6.13104 6.26035 6.29714 6.37993 6.45861 6.53065 6.65005 6.98222 7.17382 7.32540 7.49928 7.71062 7.84441 8.21516 9.08445 9.68559 10.30195 11.26814 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.015843 B = 0.003524 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.862462 B = 7944.430144 C = 9111.093785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.917 3.083 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.599 5.599 10 C 0.152 3.848 11 C -0.135 4.135 12 C 0.058 3.942 13 H 0.083 0.917 14 O -0.261 6.261 15 C 0.242 3.758 16 C -0.249 4.249 17 C 0.211 3.789 18 N -0.503 5.503 19 H 0.447 0.553 20 N -0.249 5.249 21 C 0.107 3.893 22 C -0.226 4.226 23 C 0.070 3.930 24 C -0.107 4.107 25 N 0.040 4.960 26 O -0.192 6.192 27 O -0.127 6.127 28 C 0.122 3.878 29 H 0.254 0.746 30 H 0.116 0.884 31 H 0.017 0.983 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.159 0.841 35 H 0.206 0.794 36 H 0.166 0.834 37 H 0.026 0.974 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.463 -19.996 4.301 20.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.747 3.253 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.028 3.972 11 C -0.174 4.174 12 C 0.003 3.997 13 H 0.101 0.899 14 O -0.170 6.170 15 C 0.189 3.811 16 C -0.273 4.273 17 C 0.091 3.909 18 N -0.217 5.217 19 H 0.293 0.707 20 N -0.061 5.061 21 C -0.092 4.092 22 C -0.235 4.235 23 C 0.048 3.952 24 C -0.194 4.194 25 N 0.558 4.442 26 O -0.398 6.398 27 O -0.350 6.350 28 C -0.004 4.004 29 H 0.065 0.935 30 H 0.134 0.866 31 H 0.035 0.965 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.176 0.824 35 H 0.223 0.777 36 H 0.183 0.817 37 H 0.044 0.956 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.955 -19.917 6.010 21.177 hybrid contribution 0.182 1.322 -0.381 1.388 sum 4.137 -18.595 5.630 19.864 Atomic orbital electron populations 1.69754 1.04938 1.24994 1.57241 1.24802 0.95767 0.97821 1.01942 0.85962 0.78655 0.83287 0.77355 1.20477 1.21505 1.21661 1.19112 0.90600 0.82093 1.43683 0.90277 1.44358 1.01875 0.99271 1.87170 1.22030 0.84779 0.91862 0.98562 1.23272 0.94389 0.97328 1.02377 1.24048 0.98562 0.83854 0.93274 0.89887 1.86547 1.72007 1.21839 1.36570 1.18246 0.87326 0.85929 0.89645 1.20012 1.13287 1.00054 0.93919 1.18620 0.91818 0.94261 0.86209 1.46115 1.55041 1.11769 1.08778 0.70729 1.76696 1.16419 0.90985 1.21952 1.25176 0.96274 0.99546 0.88225 1.19552 1.14113 0.95636 0.94205 1.19960 0.86599 0.96084 0.92560 1.19894 1.19523 0.97040 0.82909 1.43215 0.98407 1.00278 1.02314 1.94492 1.59903 1.23456 1.61970 1.94658 1.42535 1.24819 1.72974 1.21623 0.93392 0.86450 0.98984 0.93526 0.86601 0.96492 0.89955 0.91293 0.82408 0.77702 0.81707 0.95637 0.94319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.93 10.09 55.49 0.56 -25.37 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.23 -6.15 10.27 -15.06 -0.15 -6.31 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -14.81 3.39 -170.07 -0.58 -15.38 16 10 C 0.15 3.51 5.89 -2.53 -0.01 3.49 16 11 C -0.14 -2.48 6.81 -24.58 -0.17 -2.65 16 12 C 0.06 0.98 2.76 -24.90 -0.07 0.91 16 13 H 0.08 1.20 6.00 -51.93 -0.31 0.89 16 14 O -0.26 -4.32 7.83 -41.74 -0.33 -4.64 16 15 C 0.24 3.39 6.66 -39.19 -0.26 3.12 16 16 C -0.25 -2.92 8.99 -39.27 -0.35 -3.27 16 17 C 0.21 2.18 7.33 -84.18 -0.62 1.56 16 18 N -0.50 -4.46 7.37 32.35 0.24 -4.22 16 19 H 0.45 2.88 8.96 -182.78 -1.64 1.25 16 20 N -0.25 -2.25 12.54 31.88 0.40 -1.85 16 21 C 0.11 0.77 12.28 -15.14 -0.19 0.59 16 22 C -0.23 -2.12 6.36 -105.18 -0.67 -2.78 16 23 C 0.07 0.68 9.55 -39.62 -0.38 0.31 16 24 C -0.11 -1.43 6.82 -80.18 -0.55 -1.97 16 25 N 0.04 0.63 4.45 33.85 0.15 0.78 16 26 O -0.19 -2.90 18.39 -29.46 -0.54 -3.45 16 27 O -0.13 -2.27 17.19 -36.54 -0.63 -2.90 16 28 C 0.12 2.45 6.96 -3.07 -0.02 2.43 16 29 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.12 3.03 5.87 -51.93 -0.30 2.72 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.16 1.75 5.82 -52.49 -0.31 1.45 16 35 H 0.21 0.58 8.06 -52.48 -0.42 0.16 16 36 H 0.17 1.18 7.55 -52.49 -0.40 0.78 16 37 H 0.03 0.49 8.07 -51.93 -0.42 0.07 16 38 H 0.04 0.82 8.06 -51.93 -0.42 0.40 16 LS Contribution 327.28 15.07 4.93 4.93 Total: -1.00 -32.15 327.28 -9.38 -41.53 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.03 Total: -1.05 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -3.53 Total: -4.88 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.77 Total: -46.05 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -1.50 Total: -10.99 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.15 -9.38 -41.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230600503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.378 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds