Wall clock time and date at job start Tue Mar 31 2020 11:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00224 * 2 1 4 4 H 1.48499 * 109.46871 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47106 * 300.00624 * 3 2 1 6 6 H 1.48495 * 109.46616 * 60.00692 * 3 2 1 7 7 C 1.38814 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00093 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47431 * 125.64784 * 359.97438 * 9 7 2 11 11 C 1.54909 * 104.83118 * 155.90734 * 10 9 7 12 12 C 1.55157 * 101.58097 * 37.00913 * 11 10 9 13 13 H 1.08996 * 110.72201 * 82.86220 * 12 11 10 14 14 O 1.42901 * 110.71566 * 205.95334 * 12 11 10 15 15 C 1.35906 * 117.00016 * 207.86997 * 14 12 11 16 16 C 1.38110 * 119.72515 * 354.19890 * 15 14 12 17 17 C 1.39192 * 119.69245 * 179.97438 * 16 15 14 18 18 N 1.37063 * 133.76475 * 179.97438 * 17 16 15 19 19 H 0.96997 * 125.47083 * 0.05344 * 18 17 16 20 20 N 1.39868 * 109.07184 * 180.02562 * 18 17 16 21 21 C 1.30221 * 110.09835 * 0.02562 * 20 18 17 22 22 C 1.40857 * 119.49254 * 0.02562 * 17 16 15 23 23 C 1.39936 * 119.83436 * 359.97344 * 22 17 16 24 24 C 1.36379 * 119.84888 * 359.78232 * 23 22 17 25 25 N 1.48024 * 119.70644 * 180.25402 * 24 23 22 26 26 O 1.21805 * 119.99954 * 0.22010 * 25 24 23 27 27 O 1.21800 * 119.99990 * 180.22289 * 25 24 23 28 28 C 1.47015 * 125.64873 * 180.02562 * 9 7 2 29 29 H 0.97003 * 119.99954 * 359.97438 * 1 2 3 30 30 H 1.09001 * 110.36478 * 37.06672 * 10 9 7 31 31 H 1.08998 * 110.36475 * 274.74704 * 10 9 7 32 32 H 1.09003 * 111.00552 * 278.93463 * 11 10 9 33 33 H 1.08998 * 111.03539 * 155.10223 * 11 10 9 34 34 H 1.07999 * 120.15160 * 359.95852 * 16 15 14 35 35 H 1.08007 * 126.10093 * 179.97438 * 21 20 18 36 36 H 1.07992 * 120.07551 * 180.02562 * 23 22 17 37 37 H 1.09005 * 109.88695 * 61.61104 * 28 9 7 38 38 H 1.08996 * 109.88738 * 300.44075 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5332 0.0005 11 6 -0.4022 -3.9323 -0.6112 12 6 0.7782 -4.7524 -0.0270 13 1 0.5465 -5.0980 0.9804 14 8 1.0968 -5.8559 -0.8772 15 6 1.6485 -6.9494 -0.2883 16 6 1.9854 -6.9095 1.0505 17 6 2.5500 -8.0301 1.6531 18 7 2.9840 -8.3058 2.9236 19 1 2.9574 -7.6910 3.6733 20 7 3.4707 -9.6164 2.9659 21 6 3.3643 -10.1714 1.7927 22 6 2.7709 -9.1917 0.8877 23 6 2.4217 -9.2096 -0.4672 24 6 1.8650 -8.1038 -1.0393 25 7 1.4916 -8.1281 -2.4715 26 8 1.6782 -9.1340 -3.1326 27 8 0.9978 -7.1422 -2.9889 28 6 1.9317 -3.7275 -0.0005 29 1 -0.4850 0.8401 0.0004 30 1 -0.5998 -1.7588 -0.6147 31 1 -0.5266 -2.4868 1.0192 32 1 -0.3534 -3.8981 -1.6996 33 1 -1.3594 -4.3331 -0.2776 34 1 1.8119 -6.0129 1.6270 35 1 3.6621 -11.1771 1.5351 36 1 2.5890 -10.0983 -1.0576 37 1 2.5286 -3.8643 0.9012 38 1 2.5576 -3.8511 -0.8842 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230600503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:19 Heat of formation + Delta-G solvation = 66.137589 kcal Electronic energy + Delta-G solvation = -26344.086711 eV Core-core repulsion = 22385.235583 eV Total energy + Delta-G solvation = -3958.851128 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.28929 -42.46393 -41.07650 -38.71527 -37.56592 -37.14685 -34.33770 -33.80139 -31.78370 -31.30821 -30.50587 -29.21391 -27.17968 -26.65709 -24.57371 -23.49610 -22.80566 -22.20351 -21.85642 -20.36626 -19.92058 -19.44043 -19.08274 -18.51542 -18.36537 -17.11694 -16.80060 -16.75961 -16.29160 -15.95263 -15.70126 -15.48250 -15.32563 -14.97694 -14.41121 -14.24592 -13.72629 -13.43418 -13.10711 -13.08237 -12.89558 -12.73967 -12.56689 -12.37695 -12.12779 -12.12377 -12.06496 -12.02307 -11.89288 -11.81622 -11.56094 -11.46427 -10.80552 -9.86862 -9.48789 -8.97914 -7.83216 -5.28761 -1.09298 -0.44990 0.33538 0.43863 1.26122 1.39604 1.45854 1.47364 1.57058 1.75502 2.14636 2.46299 3.02439 3.28033 3.31356 3.37275 3.39484 3.57928 3.61435 3.71387 3.86325 3.93803 4.16232 4.33327 4.39689 4.45608 4.54081 4.61563 4.79861 4.81455 4.93371 4.94559 5.18004 5.36453 5.40939 5.53712 5.71764 5.92906 6.05768 6.24482 6.34163 6.63541 7.04226 7.69085 8.30989 9.19106 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.015843 B = 0.003524 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.862462 B = 7944.430144 C = 9111.093785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.981 3.019 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.622 5.622 10 C 0.156 3.844 11 C -0.125 4.125 12 C 0.077 3.923 13 H 0.112 0.888 14 O -0.281 6.281 15 C 0.218 3.782 16 C -0.244 4.244 17 C 0.206 3.794 18 N -0.497 5.497 19 H 0.455 0.545 20 N -0.269 5.269 21 C 0.130 3.870 22 C -0.224 4.224 23 C 0.093 3.907 24 C -0.127 4.127 25 N 0.044 4.956 26 O -0.162 6.162 27 O -0.206 6.206 28 C 0.120 3.880 29 H 0.250 0.750 30 H 0.081 0.919 31 H 0.007 0.993 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.162 0.838 35 H 0.253 0.747 36 H 0.199 0.801 37 H 0.042 0.958 38 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.987 -23.106 5.830 24.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.253 4.253 3 Si 0.809 3.191 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.350 5.350 10 C 0.031 3.969 11 C -0.163 4.163 12 C 0.022 3.978 13 H 0.130 0.870 14 O -0.190 6.190 15 C 0.165 3.835 16 C -0.268 4.268 17 C 0.085 3.915 18 N -0.211 5.211 19 H 0.303 0.697 20 N -0.080 5.080 21 C -0.069 4.069 22 C -0.233 4.233 23 C 0.072 3.928 24 C -0.214 4.214 25 N 0.556 4.444 26 O -0.379 6.379 27 O -0.411 6.411 28 C -0.005 4.005 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.024 0.976 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.179 0.821 35 H 0.269 0.731 36 H 0.216 0.784 37 H 0.059 0.941 38 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 5.444 -22.917 7.548 24.735 hybrid contribution -0.139 1.981 -0.735 2.118 sum 5.305 -20.936 6.812 22.647 Atomic orbital electron populations 1.69997 1.06133 1.25282 1.58066 1.25619 0.96671 1.00894 1.02161 0.84974 0.78001 0.79207 0.76887 1.19307 1.21801 1.21514 1.19447 0.91009 0.83477 1.43341 0.90213 1.44630 1.02780 1.00379 1.87172 1.21775 0.84025 0.93613 0.97461 1.23053 0.96773 0.95232 1.01238 1.23711 0.95985 0.83613 0.94539 0.87024 1.86519 1.73213 1.22397 1.36859 1.18466 0.88801 0.85511 0.90680 1.19952 1.13076 1.00767 0.93006 1.18698 0.91452 0.94258 0.87116 1.46258 1.54164 1.12140 1.08537 0.69713 1.76762 1.17352 0.90892 1.23010 1.25966 0.93802 1.00597 0.86504 1.19821 1.13606 0.95910 0.93993 1.20286 0.84018 0.95677 0.92842 1.20060 1.21743 0.98243 0.81337 1.43523 0.97771 0.99778 1.03331 1.94429 1.57839 1.22924 1.62741 1.94681 1.46411 1.25765 1.74196 1.21729 0.94572 0.85495 0.98730 0.94022 0.90135 0.97552 0.91444 0.88287 0.82098 0.73111 0.78416 0.94055 0.95956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.10 10.09 21.65 0.22 -54.88 16 2 C -0.06 -3.38 5.49 84.86 0.47 -2.91 16 3 Si 0.98 45.05 29.55 68.60 2.03 47.07 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.24 -13.57 10.27 84.03 0.86 -12.71 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.62 -31.67 3.39 -691.99 -2.35 -34.02 16 10 C 0.16 7.46 5.89 86.85 0.51 7.97 16 11 C -0.12 -4.68 6.81 31.99 0.22 -4.46 16 12 C 0.08 2.60 2.76 31.78 0.09 2.69 16 13 H 0.11 3.08 6.00 -2.39 -0.01 3.07 16 14 O -0.28 -9.41 7.83 -71.17 -0.56 -9.97 16 15 C 0.22 5.92 6.66 22.52 0.15 6.07 16 16 C -0.24 -5.29 8.99 22.47 0.20 -5.09 16 17 C 0.21 3.66 7.33 39.20 0.29 3.95 16 18 N -0.50 -7.24 7.37 -51.55 -0.38 -7.62 16 19 H 0.46 4.69 8.96 -213.47 -1.91 2.77 16 20 N -0.27 -3.77 12.54 -53.07 -0.67 -4.44 16 21 C 0.13 1.20 12.28 86.94 1.07 2.27 16 22 C -0.22 -3.27 6.36 -20.22 -0.13 -3.39 16 23 C 0.09 1.49 9.55 22.25 0.21 1.70 16 24 C -0.13 -3.18 6.82 36.22 0.25 -2.93 16 25 N 0.04 1.38 4.45 -46.82 -0.21 1.17 16 26 O -0.16 -4.61 18.39 18.88 0.35 -4.26 16 27 O -0.21 -7.77 17.19 25.66 0.44 -7.33 16 28 C 0.12 4.92 6.96 86.73 0.60 5.52 16 29 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 30 H 0.08 4.44 5.87 -2.39 -0.01 4.43 16 31 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.16 3.30 5.82 -2.91 -0.02 3.28 16 35 H 0.25 -0.28 8.06 -2.91 -0.02 -0.30 16 36 H 0.20 1.80 7.55 -2.91 -0.02 1.78 16 37 H 0.04 1.56 8.07 -2.38 -0.02 1.54 16 38 H 0.02 0.98 8.06 -2.39 -0.02 0.96 16 Total: -1.00 -73.39 327.28 2.89 -70.50 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -0.77 Total: 5.11 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 4.79 Total: -1.33 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -3.38 Total: -99.79 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: 0.23 Total: -21.56 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -73.39 2.89 -70.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230600503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.638 kcal (2) G-P(sol) polarization free energy of solvation -73.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds