Wall clock time and date at job start Tue Mar 31 2020 11:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31163 * 1 3 3 Cl 1.73597 * 119.99866 * 2 1 4 4 C 1.50697 * 119.99996 * 179.97438 * 2 1 3 5 5 N 1.46901 * 109.46750 * 115.00388 * 4 2 1 6 6 C 1.48183 * 111.07843 * 70.71092 * 5 4 2 7 7 C 1.53929 * 86.22638 * 137.45871 * 6 5 4 8 8 C 1.47963 * 110.99766 * 170.00050 * 5 4 2 9 9 H 1.09000 * 113.76009 * 336.84480 * 8 5 4 10 10 C 1.52998 * 113.76031 * 108.09744 * 8 5 4 11 11 N 1.46505 * 109.47470 * 303.02187 * 10 8 5 12 12 C 1.46500 * 119.99756 * 270.00188 * 11 10 8 13 13 C 1.34771 * 120.00116 * 89.99486 * 11 10 8 14 14 O 1.21288 * 119.99896 * 0.02562 * 13 11 10 15 15 C 1.50703 * 120.00048 * 180.02562 * 13 11 10 16 16 S 1.81000 * 109.46826 * 180.02562 * 15 13 11 17 17 C 1.76205 * 99.99509 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00431 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99884 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99752 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99976 * 180.27840 * 19 17 16 22 22 H 1.48497 * 109.47173 * 179.72423 * 21 19 17 23 23 H 1.48506 * 109.46866 * 299.71959 * 21 19 17 24 24 H 1.48501 * 109.47438 * 59.72080 * 21 19 17 25 25 H 1.07995 * 119.99891 * 179.97438 * 1 2 3 26 26 H 1.07997 * 119.99948 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47052 * 355.00371 * 4 2 1 28 28 H 1.08996 * 109.47171 * 235.00411 * 4 2 1 29 29 H 1.08998 * 113.65487 * 23.13361 * 6 5 4 30 30 H 1.09000 * 113.92456 * 251.82256 * 6 5 4 31 31 H 1.09003 * 113.73414 * 222.01137 * 7 6 5 32 32 H 1.09002 * 113.83150 * 90.74226 * 7 6 5 33 33 H 1.09000 * 109.47145 * 183.02022 * 10 8 5 34 34 H 1.09007 * 109.47138 * 63.02086 * 10 8 5 35 35 H 1.08996 * 109.46996 * 269.99683 * 12 11 10 36 36 H 1.09003 * 109.47400 * 29.99677 * 12 11 10 37 37 H 1.09003 * 109.46993 * 149.99446 * 12 11 10 38 38 H 1.09000 * 109.46926 * 60.00592 * 15 13 11 39 39 H 1.09001 * 109.47144 * 300.00330 * 15 13 11 40 40 H 0.97005 * 119.99723 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5034 0.0000 4 6 2.0651 -1.3051 0.0006 5 7 2.8169 -1.4369 -1.2546 6 6 3.9543 -0.4881 -1.2967 7 6 4.7742 -1.6548 -1.8763 8 6 3.7518 -2.5822 -1.1948 9 1 4.0284 -2.8709 -0.1808 10 6 3.3263 -3.7711 -2.0587 11 7 1.9859 -4.2088 -1.6610 12 6 1.8266 -5.2243 -0.6172 13 6 0.8994 -3.6771 -2.2553 14 8 1.0313 -2.8365 -3.1196 15 6 -0.4794 -4.1269 -1.8458 16 16 -1.7185 -3.2360 -2.8190 17 6 -3.1919 -3.9362 -2.1530 18 1 -3.1312 -4.6835 -1.3756 19 6 -4.4306 -3.5274 -2.6274 20 7 -4.5045 -2.6162 -3.5746 21 14 -5.9928 -4.2640 -1.9159 22 1 -7.1736 -3.6595 -2.5832 23 1 -5.9948 -5.7319 -2.1407 24 1 -6.0518 -3.9864 -0.4583 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.3602 -2.1315 0.0905 28 1 2.7572 -1.3247 0.8424 29 1 4.2892 -0.1627 -0.3118 30 1 3.8145 0.3390 -1.9928 31 1 5.7800 -1.7320 -1.4634 32 1 4.7567 -1.7074 -2.9649 33 1 4.0316 -4.5907 -1.9217 34 1 3.3149 -3.4729 -3.1071 35 1 1.8163 -6.2147 -1.0724 36 1 2.6568 -5.1562 0.0858 37 1 0.8881 -5.0577 -0.0883 38 1 -0.6301 -3.9182 -0.7866 39 1 -0.5799 -5.1977 -2.0230 40 1 -5.3703 -2.3303 -3.9059 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230815337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:09 Heat of formation + Delta-G solvation = -1.336803 kcal Electronic energy + Delta-G solvation = -22986.479075 eV Core-core repulsion = 19568.562403 eV Total energy + Delta-G solvation = -3417.916672 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.36935 -40.00649 -37.74159 -36.29863 -34.86838 -34.55402 -31.75913 -30.41158 -29.09975 -27.64218 -27.14281 -25.33527 -24.33617 -21.02662 -20.66501 -20.32781 -19.43802 -17.91230 -17.36974 -17.08528 -16.99810 -16.85328 -16.29641 -15.90787 -15.78339 -15.37455 -14.63205 -14.44688 -14.24237 -14.07622 -13.70876 -13.50607 -13.38938 -13.16561 -13.09467 -13.06520 -12.86101 -12.67176 -12.51983 -12.49901 -12.32552 -12.21009 -11.69749 -11.55605 -11.36143 -11.10572 -10.61105 -10.18768 -10.11850 -9.76239 -9.29667 -8.60582 -8.31485 -6.07977 0.92712 1.25296 1.29916 1.43482 1.48450 1.58939 1.85653 2.23613 2.32186 3.02292 3.04932 3.35009 3.50588 3.74520 3.85191 3.87962 4.19110 4.23451 4.28743 4.38119 4.39186 4.41815 4.49300 4.53386 4.63370 4.73519 4.76462 4.85450 4.97348 4.99796 5.02261 5.13327 5.27594 5.34839 5.43377 5.45949 5.79052 6.15471 6.21803 6.49043 7.09783 7.43433 8.77050 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.004261 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.742262 B = 6569.175818 C = 7818.020914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.072 4.072 3 Cl -0.089 7.089 4 C 0.073 3.927 5 N -0.481 5.481 6 C 0.003 3.997 7 C -0.123 4.123 8 C 0.018 3.982 9 H 0.102 0.898 10 C 0.136 3.864 11 N -0.612 5.612 12 C 0.073 3.927 13 C 0.533 3.467 14 O -0.538 6.538 15 C -0.124 4.124 16 S -0.141 6.141 17 C -0.546 4.546 18 H 0.079 0.921 19 C 0.017 3.983 20 N -0.911 5.911 21 Si 0.993 3.007 22 H -0.280 1.280 23 H -0.263 1.263 24 H -0.262 1.262 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.176 -2.244 12.024 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 Cl -0.061 7.061 4 C -0.055 4.055 5 N -0.203 5.203 6 C -0.125 4.125 7 C -0.162 4.162 8 C -0.092 4.092 9 H 0.119 0.881 10 C 0.013 3.987 11 N -0.347 5.347 12 C -0.069 4.069 13 C 0.319 3.681 14 O -0.413 6.413 15 C -0.275 4.275 16 S 0.086 5.914 17 C -0.694 4.694 18 H 0.097 0.903 19 C -0.188 4.188 20 N -0.547 5.547 21 Si 0.815 3.185 22 H -0.205 1.205 23 H -0.188 1.188 24 H -0.186 1.186 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.134 0.866 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.839 -0.773 10.151 22.299 hybrid contribution -1.089 -0.868 1.695 2.193 sum 18.750 -1.640 11.846 22.239 Atomic orbital electron populations 1.24077 0.94294 1.03765 0.97969 1.23206 0.93697 0.87573 1.05353 1.98331 1.77836 1.32881 1.97018 1.21644 0.98211 0.92340 0.93326 1.68858 1.16082 1.04450 1.30959 1.23929 0.90995 0.96552 1.01039 1.23268 0.98209 0.93537 1.01156 1.24010 0.92346 0.92584 1.00280 0.88070 1.21506 0.82481 0.96176 0.98542 1.47707 1.05254 1.41837 1.39859 1.22019 1.03862 0.90734 0.90303 1.19842 0.85685 0.80973 0.81591 1.90710 1.86316 1.32123 1.32186 1.23382 0.95733 1.04228 1.04181 1.85613 0.97986 1.55374 1.52395 1.23160 0.92583 1.27975 1.25666 0.90325 1.26047 1.02565 0.95170 0.95021 1.70184 1.26529 1.30157 1.27863 0.85090 0.76116 0.78663 0.78674 1.20498 1.18757 1.18647 0.86799 0.86844 0.90260 0.91313 0.90202 0.91231 0.88073 0.90015 0.86590 0.92136 0.91523 0.88196 0.91544 0.88416 0.88604 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.04 14.05 67.62 0.95 -4.09 16 2 C -0.07 -2.03 6.00 25.48 0.15 -1.88 16 3 Cl -0.09 -2.27 26.52 -2.72 -0.07 -2.34 16 4 C 0.07 1.83 5.21 85.56 0.45 2.27 16 5 N -0.48 -12.51 4.97 -885.25 -4.40 -16.91 16 6 C 0.00 0.07 5.95 86.36 0.51 0.59 16 7 C -0.12 -2.04 7.84 31.23 0.25 -1.80 16 8 C 0.02 0.32 3.58 45.02 0.16 0.49 16 9 H 0.10 1.35 7.79 -2.39 -0.02 1.33 16 10 C 0.14 2.78 5.59 86.38 0.48 3.26 16 11 N -0.61 -15.22 2.83 -846.73 -2.40 -17.62 16 12 C 0.07 1.18 10.24 127.77 1.31 2.49 16 13 C 0.53 19.65 7.00 87.66 0.61 20.26 16 14 O -0.54 -24.88 14.88 -3.06 -0.05 -24.92 16 15 C -0.12 -4.97 4.71 71.24 0.34 -4.63 16 16 S -0.14 -7.82 20.57 -56.49 -1.16 -8.98 16 17 C -0.55 -31.12 9.50 67.96 0.65 -30.48 16 18 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 19 C 0.02 0.96 5.49 84.86 0.47 1.42 16 20 N -0.91 -56.19 13.22 21.65 0.29 -55.91 16 21 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 25 H 0.11 3.84 7.84 -2.91 -0.02 3.82 16 26 H 0.11 3.35 8.06 -2.91 -0.02 3.33 16 27 H 0.08 2.16 7.56 -2.39 -0.02 2.15 16 28 H 0.07 1.37 7.69 -2.39 -0.02 1.35 16 29 H 0.08 1.47 7.31 -2.39 -0.02 1.45 16 30 H 0.07 1.74 8.03 -2.39 -0.02 1.72 16 31 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.57 7.92 -2.39 -0.02 1.55 16 33 H 0.12 1.43 8.07 -2.39 -0.02 1.42 16 34 H 0.06 1.63 7.15 -2.38 -0.02 1.62 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.10 0.95 8.07 -2.39 -0.02 0.93 16 37 H 0.07 1.18 6.44 -2.39 -0.02 1.16 16 38 H 0.10 3.57 7.40 -2.39 -0.02 3.55 16 39 H 0.10 3.58 8.11 -2.39 -0.02 3.56 16 40 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 Total: -1.00 -76.64 358.87 1.58 -75.06 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 1.02 Total: 18.06 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 6.32 Total: -12.09 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -6.51 Total: -90.43 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.05 Total: -24.92 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -7.82 SS G_CDS: -1.16 Total: -8.98 kcal Atomic # 17 Polarization: -2.27 SS G_CDS: -0.07 Total: -2.34 kcal Total: -76.64 1.58 -75.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230815337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.720 kcal (2) G-P(sol) polarization free energy of solvation -76.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds