Wall clock time and date at job start Tue Mar 31 2020 11:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99756 * 2 1 4 4 C 1.52998 * 109.47470 * 270.00188 * 3 2 1 5 5 H 1.09003 * 112.74079 * 74.66795 * 4 3 2 6 6 C 1.53504 * 113.47485 * 205.43851 * 4 3 2 7 7 C 1.53630 * 83.53563 * 140.77355 * 6 4 3 8 8 N 1.47478 * 87.95166 * 334.02190 * 7 6 4 9 9 C 1.46905 * 111.00060 * 138.64866 * 8 7 6 10 10 C 1.50700 * 109.46735 * 74.03220 * 9 8 7 11 11 C 1.31160 * 119.99678 * 125.00293 * 10 9 8 12 12 Cl 1.73597 * 120.00170 * 359.97438 * 11 10 9 13 13 C 1.34771 * 120.00128 * 180.02562 * 2 1 3 14 14 O 1.21288 * 119.99896 * 179.97438 * 13 2 1 15 15 C 1.50703 * 120.00048 * 359.97438 * 13 2 1 16 16 S 1.81000 * 109.46826 * 180.02562 * 15 13 2 17 17 C 1.76205 * 99.99509 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00431 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99884 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99752 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99976 * 180.27840 * 19 17 16 22 22 H 1.48497 * 109.47173 * 179.72423 * 21 19 17 23 23 H 1.48506 * 109.46866 * 299.71959 * 21 19 17 24 24 H 1.48501 * 109.47438 * 59.72080 * 21 19 17 25 25 H 1.08996 * 109.46996 * 269.99683 * 1 2 3 26 26 H 1.09003 * 109.47400 * 29.99677 * 1 2 3 27 27 H 1.09003 * 109.46993 * 149.99446 * 1 2 3 28 28 H 1.09000 * 109.47071 * 30.00398 * 3 2 1 29 29 H 1.09007 * 109.46858 * 150.00118 * 3 2 1 30 30 H 1.09004 * 114.17379 * 254.43761 * 6 4 3 31 31 H 1.08995 * 114.17574 * 27.14597 * 6 4 3 32 32 H 1.09002 * 113.52002 * 219.24319 * 7 6 4 33 33 H 1.09005 * 113.47899 * 88.79819 * 7 6 4 34 34 H 1.09004 * 109.46677 * 194.03031 * 9 8 7 35 35 H 1.08995 * 109.47070 * 314.03389 * 9 8 7 36 36 H 1.07994 * 120.00094 * 304.99787 * 10 9 8 37 37 H 1.08003 * 119.99659 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.46926 * 60.00592 * 15 13 2 39 39 H 1.09001 * 109.47144 * 300.00330 * 15 13 2 40 40 H 0.97005 * 119.99723 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7106 -1.4425 5 1 1.5577 2.0999 -1.9283 6 6 3.6775 2.6229 -1.5951 7 6 3.9040 1.8127 -2.8806 8 7 3.1672 0.7029 -2.2479 9 6 2.2616 0.0574 -3.2078 10 6 3.0639 -0.7788 -4.1711 11 6 2.7839 -2.0507 -4.3262 12 17 1.4894 -2.7711 -3.4213 13 6 2.1389 -1.1671 -0.0005 14 8 3.3518 -1.1671 -0.0010 15 6 1.3854 -2.4723 -0.0005 16 16 2.5617 -3.8479 -0.0005 17 6 1.4416 -5.2081 -0.0013 18 1 0.3763 -5.0305 -0.0020 19 6 1.9284 -6.5080 -0.0010 20 7 3.2268 -6.7245 -0.0006 21 14 0.7410 -7.9500 -0.0097 22 1 1.5071 -9.2221 -0.0146 23 1 -0.1159 -7.8929 1.2020 24 1 -0.1123 -7.8814 -1.2231 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5139 30 1 3.4345 3.6719 -1.7649 31 1 4.4426 2.4741 -0.8332 32 1 4.9525 1.5845 -3.0718 33 1 3.3978 2.2294 -3.7514 34 1 1.5584 -0.5801 -2.6716 35 1 1.7125 0.8206 -3.7591 36 1 3.8694 -0.3307 -4.7339 37 1 3.3586 -2.6498 -5.0170 38 1 0.7585 -2.5299 -0.8903 39 1 0.7590 -2.5302 0.8897 40 1 3.5670 -7.6330 -0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230819385.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:14 Heat of formation + Delta-G solvation = 25.683927 kcal Electronic energy + Delta-G solvation = -23286.279569 eV Core-core repulsion = 19869.534603 eV Total energy + Delta-G solvation = -3416.744965 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.52309 -38.69827 -36.41143 -35.00719 -33.77548 -32.31994 -30.43046 -29.22924 -27.87819 -26.12607 -25.35611 -24.25077 -23.22485 -19.83005 -19.66928 -18.99880 -17.52346 -16.75314 -16.23942 -15.94347 -15.80714 -15.14645 -14.71938 -14.63244 -14.43180 -13.78414 -13.52897 -13.07925 -12.80300 -12.70147 -12.62891 -12.34288 -12.25716 -12.10994 -11.71435 -11.51512 -11.50416 -11.37756 -10.97965 -10.93404 -10.80882 -10.68500 -10.63660 -10.01870 -9.69975 -9.07559 -8.98834 -8.95176 -8.64623 -8.20051 -8.05961 -6.32206 -6.11060 -3.77781 2.08693 2.75888 3.10615 3.28510 3.31925 3.34468 3.38875 3.74653 4.07972 4.30805 4.37570 4.69854 4.82593 4.98834 5.12449 5.19230 5.23267 5.23785 5.25714 5.32700 5.41352 5.42702 5.52901 5.56029 5.67360 5.72589 5.77527 5.78291 5.98734 6.07136 6.10224 6.27531 6.29495 6.37672 6.52087 6.86614 7.11427 7.68561 7.78461 8.44928 8.88403 9.34338 10.96145 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.004688 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.420420 B = 5970.759291 C = 6680.976099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.626 5.626 3 C 0.137 3.863 4 C 0.008 3.992 5 H 0.072 0.928 6 C -0.135 4.135 7 C -0.008 4.008 8 N -0.431 5.431 9 C 0.042 3.958 10 C -0.151 4.151 11 C -0.089 4.089 12 Cl -0.066 7.066 13 C 0.536 3.464 14 O -0.491 6.491 15 C -0.149 4.149 16 S -0.048 6.048 17 C -0.530 4.530 18 H 0.067 0.933 19 C 0.076 3.924 20 N -0.868 5.868 21 Si 0.912 3.088 22 H -0.283 1.283 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.042 0.958 36 H 0.126 0.874 37 H 0.144 0.856 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.564 19.435 -6.834 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.363 5.363 3 C 0.013 3.987 4 C -0.102 4.102 5 H 0.090 0.910 6 C -0.174 4.174 7 C -0.137 4.137 8 N -0.153 5.153 9 C -0.086 4.086 10 C -0.171 4.171 11 C -0.134 4.134 12 Cl -0.038 7.038 13 C 0.323 3.677 14 O -0.362 6.362 15 C -0.299 4.299 16 S 0.179 5.821 17 C -0.679 4.679 18 H 0.085 0.915 19 C -0.133 4.133 20 N -0.503 5.503 21 Si 0.738 3.262 22 H -0.209 1.209 23 H -0.201 1.201 24 H -0.201 1.201 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.060 0.940 36 H 0.144 0.856 37 H 0.161 0.839 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.380 18.629 -6.445 19.856 hybrid contribution -2.910 -0.436 -0.616 3.007 sum -5.291 18.193 -7.061 20.220 Atomic orbital electron populations 1.21707 0.80510 1.02556 1.01459 1.47765 1.06107 1.05781 1.76668 1.21315 0.98146 0.84914 0.94334 1.23857 0.96411 0.92919 0.97062 0.90991 1.23168 0.97967 0.97598 0.98639 1.23779 1.01258 0.92482 0.96147 1.69221 1.16210 1.16205 1.13621 1.21900 0.95298 0.97990 0.93437 1.22750 1.00319 0.94731 0.99252 1.24507 0.94839 0.95178 0.98917 1.98413 1.48817 1.83182 1.73381 1.20096 0.88015 0.84084 0.75536 1.90699 1.13295 1.86325 1.45889 1.23579 1.04522 0.98040 1.03795 1.85341 1.07568 0.92691 1.96502 1.22801 0.94209 0.92495 1.58373 0.91500 1.24916 0.95473 0.98138 0.94805 1.70012 1.11609 1.21471 1.47246 0.86337 0.80418 0.80711 0.78713 1.20878 1.20070 1.20051 0.92928 0.91914 0.91170 0.90909 0.89266 0.90891 0.88513 0.89751 0.91935 0.88676 0.93996 0.85636 0.83880 0.90040 0.90244 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 10.24 59.85 0.61 1.53 16 2 N -0.63 -9.15 2.76 -181.56 -0.50 -9.65 16 3 C 0.14 1.67 5.57 -4.04 -0.02 1.64 16 4 C 0.01 0.09 3.36 -71.45 -0.24 -0.15 16 5 H 0.07 0.70 7.77 -51.93 -0.40 0.30 16 6 C -0.14 -1.25 8.01 -26.14 -0.21 -1.46 16 7 C -0.01 -0.08 7.26 -7.49 -0.05 -0.13 16 8 N -0.43 -5.93 5.03 -237.77 -1.20 -7.13 16 9 C 0.04 0.57 5.13 -4.97 -0.03 0.54 16 10 C -0.15 -2.06 9.44 -36.07 -0.34 -2.40 16 11 C -0.09 -1.33 10.82 28.97 0.31 -1.02 16 12 Cl -0.07 -1.18 25.64 -51.86 -1.33 -2.51 16 13 C 0.54 10.49 6.74 -10.99 -0.07 10.41 16 14 O -0.49 -11.38 14.86 5.55 0.08 -11.30 16 15 C -0.15 -3.18 4.71 36.01 0.17 -3.01 16 16 S -0.05 -1.32 20.57 -107.50 -2.21 -3.53 16 17 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 18 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 19 C 0.08 2.19 5.49 -17.43 -0.10 2.10 16 20 N -0.87 -26.50 13.22 55.49 0.73 -25.76 16 21 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.53 8.07 -51.93 -0.42 0.12 16 27 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 28 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 29 H 0.09 1.28 7.18 -51.93 -0.37 0.91 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.97 7.95 -51.93 -0.41 0.55 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.56 7.70 -51.93 -0.40 0.16 16 34 H 0.10 1.48 5.48 -51.93 -0.28 1.20 16 35 H 0.04 0.49 7.56 -51.93 -0.39 0.10 16 36 H 0.13 1.44 8.00 -52.49 -0.42 1.02 16 37 H 0.14 1.85 8.06 -52.48 -0.42 1.43 16 38 H 0.08 1.67 6.01 -51.92 -0.31 1.36 16 39 H 0.08 1.62 8.11 -51.91 -0.42 1.20 16 40 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -34.92 356.17 -9.58 -44.50 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.83 Total: 0.13 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 0.33 Total: -6.97 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: -0.96 Total: -42.54 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -1.32 SS G_CDS: -2.21 Total: -3.53 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.33 Total: -2.51 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.92 -9.58 -44.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230819385.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.179 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds