Wall clock time and date at job start Tue Mar 31 2020 11:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99756 * 2 1 4 4 C 1.52998 * 109.47470 * 270.00188 * 3 2 1 5 5 H 1.09003 * 112.74079 * 74.66795 * 4 3 2 6 6 C 1.53504 * 113.47485 * 205.43851 * 4 3 2 7 7 C 1.53630 * 83.53563 * 140.77355 * 6 4 3 8 8 N 1.47478 * 87.95166 * 334.02190 * 7 6 4 9 9 C 1.46905 * 111.00060 * 138.64866 * 8 7 6 10 10 C 1.50700 * 109.46735 * 74.03220 * 9 8 7 11 11 C 1.31160 * 119.99678 * 125.00293 * 10 9 8 12 12 Cl 1.73597 * 120.00170 * 359.97438 * 11 10 9 13 13 C 1.34771 * 120.00128 * 180.02562 * 2 1 3 14 14 O 1.21288 * 119.99896 * 179.97438 * 13 2 1 15 15 C 1.50703 * 120.00048 * 359.97438 * 13 2 1 16 16 S 1.81000 * 109.46826 * 180.02562 * 15 13 2 17 17 C 1.76205 * 99.99509 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00431 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99884 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99752 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99976 * 180.27840 * 19 17 16 22 22 H 1.48497 * 109.47173 * 179.72423 * 21 19 17 23 23 H 1.48506 * 109.46866 * 299.71959 * 21 19 17 24 24 H 1.48501 * 109.47438 * 59.72080 * 21 19 17 25 25 H 1.08996 * 109.46996 * 269.99683 * 1 2 3 26 26 H 1.09003 * 109.47400 * 29.99677 * 1 2 3 27 27 H 1.09003 * 109.46993 * 149.99446 * 1 2 3 28 28 H 1.09000 * 109.47071 * 30.00398 * 3 2 1 29 29 H 1.09007 * 109.46858 * 150.00118 * 3 2 1 30 30 H 1.09004 * 114.17379 * 254.43761 * 6 4 3 31 31 H 1.08995 * 114.17574 * 27.14597 * 6 4 3 32 32 H 1.09002 * 113.52002 * 219.24319 * 7 6 4 33 33 H 1.09005 * 113.47899 * 88.79819 * 7 6 4 34 34 H 1.09004 * 109.46677 * 194.03031 * 9 8 7 35 35 H 1.08995 * 109.47070 * 314.03389 * 9 8 7 36 36 H 1.07994 * 120.00094 * 304.99787 * 10 9 8 37 37 H 1.08003 * 119.99659 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.46926 * 60.00592 * 15 13 2 39 39 H 1.09001 * 109.47144 * 300.00330 * 15 13 2 40 40 H 0.97005 * 119.99723 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7106 -1.4425 5 1 1.5577 2.0999 -1.9283 6 6 3.6775 2.6229 -1.5951 7 6 3.9040 1.8127 -2.8806 8 7 3.1672 0.7029 -2.2479 9 6 2.2616 0.0574 -3.2078 10 6 3.0639 -0.7788 -4.1711 11 6 2.7839 -2.0507 -4.3262 12 17 1.4894 -2.7711 -3.4213 13 6 2.1389 -1.1671 -0.0005 14 8 3.3518 -1.1671 -0.0010 15 6 1.3854 -2.4723 -0.0005 16 16 2.5617 -3.8479 -0.0005 17 6 1.4416 -5.2081 -0.0013 18 1 0.3763 -5.0305 -0.0020 19 6 1.9284 -6.5080 -0.0010 20 7 3.2268 -6.7245 -0.0006 21 14 0.7410 -7.9500 -0.0097 22 1 1.5071 -9.2221 -0.0146 23 1 -0.1159 -7.8929 1.2020 24 1 -0.1123 -7.8814 -1.2231 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5139 30 1 3.4345 3.6719 -1.7649 31 1 4.4426 2.4741 -0.8332 32 1 4.9525 1.5845 -3.0718 33 1 3.3978 2.2294 -3.7514 34 1 1.5584 -0.5801 -2.6716 35 1 1.7125 0.8206 -3.7591 36 1 3.8694 -0.3307 -4.7339 37 1 3.3586 -2.6498 -5.0170 38 1 0.7585 -2.5299 -0.8903 39 1 0.7590 -2.5302 0.8897 40 1 3.5670 -7.6330 -0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230819385.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:13 Heat of formation + Delta-G solvation = 1.979066 kcal Electronic energy + Delta-G solvation = -23287.307489 eV Core-core repulsion = 19869.534603 eV Total energy + Delta-G solvation = -3417.772885 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.49470 -40.03276 -37.62640 -36.31289 -34.85729 -34.52602 -31.74026 -30.28642 -29.07916 -27.62002 -27.13355 -25.21768 -24.21944 -20.89378 -20.64138 -20.36056 -19.42375 -17.92951 -17.52308 -17.09197 -17.00564 -16.83859 -16.18289 -15.93386 -15.67282 -15.47401 -14.64291 -14.46769 -14.18350 -14.05481 -13.74306 -13.44553 -13.39930 -13.20411 -13.09261 -12.99366 -12.86750 -12.68718 -12.53728 -12.48374 -12.30799 -11.71705 -11.66827 -11.55941 -11.23057 -11.08446 -10.60411 -10.14898 -10.06762 -9.70939 -9.30170 -8.51832 -8.29002 -6.01805 0.97860 1.29831 1.41533 1.46668 1.57247 1.60307 1.87299 2.24860 2.34139 3.04371 3.19132 3.38660 3.56612 3.83761 3.87514 3.89214 4.23496 4.25371 4.29967 4.35427 4.39194 4.41621 4.47483 4.51120 4.55109 4.67752 4.75331 4.86149 4.90745 5.01423 5.02612 5.20226 5.29978 5.41598 5.44500 5.50894 5.79212 6.23338 6.24037 6.48179 7.12387 7.43697 8.79572 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.004688 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.420420 B = 5970.759291 C = 6680.976099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.614 5.614 3 C 0.132 3.868 4 C 0.011 3.989 5 H 0.096 0.904 6 C -0.121 4.121 7 C -0.006 4.006 8 N -0.473 5.473 9 C 0.042 3.958 10 C -0.138 4.138 11 C -0.115 4.115 12 Cl -0.099 7.099 13 C 0.539 3.461 14 O -0.537 6.537 15 C -0.125 4.125 16 S -0.121 6.121 17 C -0.540 4.540 18 H 0.070 0.930 19 C 0.019 3.981 20 N -0.909 5.909 21 Si 0.986 3.014 22 H -0.277 1.277 23 H -0.263 1.263 24 H -0.266 1.266 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.113 0.887 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.504 21.681 -7.313 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.349 5.349 3 C 0.009 3.991 4 C -0.100 4.100 5 H 0.113 0.887 6 C -0.159 4.159 7 C -0.135 4.135 8 N -0.196 5.196 9 C -0.086 4.086 10 C -0.157 4.157 11 C -0.160 4.160 12 Cl -0.071 7.071 13 C 0.325 3.675 14 O -0.412 6.412 15 C -0.276 4.276 16 S 0.106 5.894 17 C -0.688 4.688 18 H 0.088 0.912 19 C -0.185 4.185 20 N -0.546 5.546 21 Si 0.808 3.192 22 H -0.202 1.202 23 H -0.188 1.188 24 H -0.191 1.191 25 H 0.087 0.913 26 H 0.118 0.882 27 H 0.076 0.924 28 H 0.131 0.869 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.167 0.833 37 H 0.174 0.826 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.361 20.927 -6.923 22.470 hybrid contribution -2.306 -0.942 -0.474 2.535 sum -6.667 19.986 -7.397 22.329 Atomic orbital electron populations 1.21981 0.78081 1.03888 1.02913 1.47706 1.07624 1.05059 1.74478 1.21581 0.97407 0.84301 0.95780 1.23931 0.97809 0.92500 0.95715 0.88656 1.23087 0.96523 0.98932 0.97362 1.23835 1.00598 0.91639 0.97403 1.69231 1.17388 1.18196 1.14741 1.21866 0.95119 0.98218 0.93411 1.23103 0.99933 0.94283 0.98385 1.24765 0.95111 0.96093 1.00026 1.98394 1.50451 1.83829 1.74413 1.19727 0.87300 0.84801 0.75636 1.90680 1.14999 1.86974 1.48567 1.23389 1.02914 0.96850 1.04437 1.85434 1.11318 0.95862 1.96739 1.23070 0.94305 0.93178 1.58277 0.91182 1.25945 0.97314 1.01220 0.94065 1.70170 1.13824 1.22215 1.48356 0.85188 0.78007 0.76661 0.79301 1.20204 1.18812 1.19062 0.91336 0.88163 0.92357 0.86871 0.92014 0.87679 0.89912 0.90761 0.89776 0.90891 0.91693 0.83346 0.82582 0.89199 0.89506 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.44 10.24 127.77 1.31 2.75 16 2 N -0.61 -16.89 2.76 -846.73 -2.34 -19.23 16 3 C 0.13 2.90 5.57 86.38 0.48 3.38 16 4 C 0.01 0.20 3.36 42.18 0.14 0.35 16 5 H 0.10 1.39 7.77 -2.39 -0.02 1.38 16 6 C -0.12 -1.87 8.01 30.98 0.25 -1.62 16 7 C -0.01 -0.11 7.26 83.61 0.61 0.49 16 8 N -0.47 -12.26 5.03 -906.18 -4.56 -16.81 16 9 C 0.04 1.07 5.13 85.56 0.44 1.51 16 10 C -0.14 -3.63 9.44 25.49 0.24 -3.39 16 11 C -0.11 -3.47 10.82 67.62 0.73 -2.74 16 12 Cl -0.10 -3.62 25.64 -2.72 -0.07 -3.69 16 13 C 0.54 21.21 6.74 87.66 0.59 21.80 16 14 O -0.54 -25.65 14.86 -3.06 -0.05 -25.70 16 15 C -0.12 -5.41 4.71 71.24 0.34 -5.07 16 16 S -0.12 -6.89 20.57 -56.49 -1.16 -8.05 16 17 C -0.54 -31.80 9.50 67.96 0.65 -31.16 16 18 H 0.07 3.93 7.80 -2.91 -0.02 3.90 16 19 C 0.02 1.14 5.49 84.86 0.47 1.60 16 20 N -0.91 -56.90 13.22 21.65 0.29 -56.62 16 21 Si 0.99 45.09 29.55 68.60 2.03 47.12 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.10 1.25 8.07 -2.39 -0.02 1.23 16 27 H 0.06 1.30 6.44 -2.39 -0.02 1.29 16 28 H 0.11 1.57 8.07 -2.39 -0.02 1.56 16 29 H 0.06 1.73 7.18 -2.38 -0.02 1.71 16 30 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.08 1.53 7.95 -2.39 -0.02 1.51 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.18 7.70 -2.38 -0.02 1.17 16 34 H 0.07 2.21 5.48 -2.39 -0.01 2.20 16 35 H 0.07 1.32 7.56 -2.39 -0.02 1.30 16 36 H 0.15 3.15 8.00 -2.91 -0.02 3.13 16 37 H 0.16 4.11 8.06 -2.91 -0.02 4.09 16 38 H 0.09 3.74 6.01 -2.39 -0.01 3.72 16 39 H 0.09 3.57 8.11 -2.39 -0.02 3.55 16 40 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -79.49 356.17 1.41 -78.08 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 1.03 Total: 17.01 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 6.24 Total: -12.10 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -6.61 Total: -92.66 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.05 Total: -25.70 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: -6.89 SS G_CDS: -1.16 Total: -8.05 kcal Atomic # 17 Polarization: -3.62 SS G_CDS: -0.07 Total: -3.69 kcal Total: -79.49 1.41 -78.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230819385.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.059 kcal (2) G-P(sol) polarization free energy of solvation -79.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds