Wall clock time and date at job start Tue Mar 31 2020 11:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.09002 * 112.95341 * 285.33011 * 4 3 2 6 6 C 1.53941 * 113.75723 * 153.68970 * 4 3 2 7 7 C 1.53940 * 86.33802 * 221.95783 * 6 4 3 8 8 N 1.47957 * 113.76271 * 56.98076 * 4 3 2 9 9 C 1.46896 * 110.99994 * 251.90165 * 8 4 3 10 10 C 1.50699 * 109.47156 * 169.99763 * 9 8 4 11 11 C 1.31164 * 119.99974 * 125.00110 * 10 9 8 12 12 Cl 1.73602 * 120.00088 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 14 14 O 1.21279 * 120.00410 * 179.97438 * 13 2 1 15 15 C 1.50703 * 119.99541 * 359.97438 * 13 2 1 16 16 S 1.81004 * 109.46790 * 180.02562 * 15 13 2 17 17 C 1.76197 * 99.99958 * 180.02562 * 16 15 13 18 18 H 1.08008 * 119.99914 * 0.02562 * 17 16 15 19 19 C 1.38802 * 120.00243 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99782 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00188 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47104 * 89.99919 * 21 19 17 23 23 H 1.48498 * 109.46993 * 210.00231 * 21 19 17 24 24 H 1.48504 * 109.47061 * 330.00171 * 21 19 17 25 25 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 26 26 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 27 27 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 28 28 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 29 29 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 30 30 H 1.09001 * 113.73490 * 336.31423 * 6 4 3 31 31 H 1.08998 * 113.73515 * 107.49888 * 6 4 3 32 32 H 1.08998 * 113.76069 * 138.03458 * 7 6 4 33 33 H 1.08992 * 113.75756 * 269.29245 * 7 6 4 34 34 H 1.08999 * 109.47175 * 289.99629 * 9 8 4 35 35 H 1.09005 * 109.47433 * 49.99571 * 9 8 4 36 36 H 1.07993 * 120.00272 * 305.00063 * 10 9 8 37 37 H 1.08007 * 119.99982 * 359.97438 * 11 10 9 38 38 H 1.08996 * 109.47057 * 299.99739 * 15 13 2 39 39 H 1.08996 * 109.47084 * 60.00703 * 15 13 2 40 40 H 0.96994 * 120.00208 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5600 2.1004 1.9318 6 6 3.6922 2.6083 1.6062 7 6 3.9989 1.7858 2.8707 8 7 3.1874 0.7122 2.2505 9 6 2.3029 0.0807 3.2387 10 6 3.0103 -1.0907 3.8700 11 6 3.1323 -1.1579 5.1742 12 17 3.9478 -2.5070 5.9014 13 6 2.1389 -1.1672 -0.0005 14 8 3.3517 -1.1672 -0.0010 15 6 1.3854 -2.4723 -0.0005 16 16 2.5616 -3.8480 -0.0005 17 6 1.4415 -5.2082 -0.0013 18 1 0.3762 -5.0305 -0.0020 19 6 1.9282 -6.5081 -0.0020 20 7 3.2266 -6.7247 -0.0017 21 14 0.7408 -7.9501 -0.0036 22 1 0.4267 -8.3311 -1.4040 23 1 1.3618 -9.1034 0.6959 24 1 -0.5102 -7.5619 0.6962 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5139 28 1 3.1499 1.1384 -0.5139 29 1 1.6084 2.0284 -0.5139 30 1 4.4303 2.4860 0.8135 31 1 3.4538 3.6528 1.8073 32 1 5.0527 1.5314 2.9842 33 1 3.5608 2.1980 3.7796 34 1 2.0426 0.8062 4.0094 35 1 1.3952 -0.2662 2.7448 36 1 3.4168 -1.8748 3.2486 37 1 2.7261 -0.3735 5.7957 38 1 0.7591 -2.5302 0.8897 39 1 0.7585 -2.5298 -0.8903 40 1 3.5668 -7.6330 -0.0026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230819386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:17 Heat of formation + Delta-G solvation = 18.315508 kcal Electronic energy + Delta-G solvation = -22695.912203 eV Core-core repulsion = 19278.847719 eV Total energy + Delta-G solvation = -3417.064484 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.41008 -38.74463 -36.53395 -35.10969 -34.07220 -32.37859 -30.47991 -29.23077 -27.97212 -26.22790 -25.42065 -24.18720 -23.34990 -20.13849 -19.66376 -19.04788 -17.59144 -16.66503 -16.29081 -16.13507 -15.81029 -15.29223 -14.76264 -14.62010 -14.19924 -14.04877 -13.78697 -13.24489 -13.06750 -12.79781 -12.52277 -12.33619 -12.31568 -12.09137 -11.92466 -11.59283 -11.51194 -11.39888 -11.03204 -10.97205 -10.96742 -10.82177 -10.71893 -10.59514 -9.74977 -9.13535 -9.01822 -8.94256 -8.87513 -8.28901 -8.14665 -6.42834 -6.16704 -3.86082 2.00227 2.47881 3.02027 3.24809 3.28013 3.29860 3.33177 3.64316 3.90752 4.25357 4.37732 4.61106 4.86704 4.91557 4.94199 5.03742 5.13701 5.16798 5.18407 5.24013 5.33604 5.40789 5.45827 5.52107 5.57668 5.68029 5.68188 5.72139 5.92099 5.99297 6.05127 6.19278 6.20677 6.40199 6.54336 6.78859 7.02439 7.63782 7.70179 8.39749 8.79395 9.28699 10.90611 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010601 B = 0.004653 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.512706 B = 6016.447730 C = 7924.085031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.626 5.626 3 C 0.139 3.861 4 C 0.013 3.987 5 H 0.074 0.926 6 C -0.135 4.135 7 C 0.000 4.000 8 N -0.443 5.443 9 C 0.058 3.942 10 C -0.111 4.111 11 C -0.123 4.123 12 Cl -0.094 7.094 13 C 0.533 3.467 14 O -0.490 6.490 15 C -0.150 4.150 16 S -0.057 6.057 17 C -0.535 4.535 18 H 0.070 0.930 19 C 0.075 3.925 20 N -0.867 5.867 21 Si 0.915 3.085 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.273 1.273 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.947 20.449 6.338 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.363 5.363 3 C 0.015 3.985 4 C -0.098 4.098 5 H 0.092 0.908 6 C -0.174 4.174 7 C -0.129 4.129 8 N -0.165 5.165 9 C -0.070 4.070 10 C -0.130 4.130 11 C -0.168 4.168 12 Cl -0.066 7.066 13 C 0.320 3.680 14 O -0.362 6.362 15 C -0.300 4.300 16 S 0.170 5.830 17 C -0.683 4.683 18 H 0.088 0.912 19 C -0.134 4.134 20 N -0.502 5.502 21 Si 0.742 3.258 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.615 19.614 6.085 20.702 hybrid contribution -2.873 -0.475 0.641 2.982 sum -5.488 19.139 6.727 21.016 Atomic orbital electron populations 1.21724 0.80369 1.02608 1.01574 1.47767 1.06166 1.05726 1.76606 1.21276 0.98233 0.84940 0.94085 1.23923 0.96242 0.92747 0.96885 0.90790 1.23328 0.97515 0.97700 0.98807 1.23971 1.00911 0.92057 0.95928 1.68680 1.14623 1.18785 1.14452 1.21624 0.96223 0.94569 0.94615 1.23218 0.96346 0.98879 0.94562 1.24205 1.03407 0.93741 0.95472 1.98372 1.78169 1.46203 1.83841 1.20139 0.88043 0.84137 0.75675 1.90710 1.13288 1.86324 1.45843 1.23557 1.04510 0.97838 1.04137 1.85390 1.07860 0.93106 1.96627 1.22864 0.94305 0.92384 1.58768 0.91157 1.24960 0.95574 0.98286 0.94623 1.70016 1.11688 1.21566 1.46965 0.86221 0.80373 0.80926 0.78306 1.20312 1.20773 1.19742 0.92904 0.91913 0.90982 0.89203 0.90748 0.88690 0.91146 0.89226 0.91752 0.93870 0.89637 0.84454 0.84637 0.89909 0.89818 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.24 59.85 0.61 1.42 16 2 N -0.63 -8.39 2.83 -181.57 -0.51 -8.91 16 3 C 0.14 1.55 5.59 -4.04 -0.02 1.53 16 4 C 0.01 0.13 3.55 -66.66 -0.24 -0.11 16 5 H 0.07 0.63 7.92 -51.93 -0.41 0.22 16 6 C -0.14 -1.17 7.84 -25.78 -0.20 -1.37 16 7 C 0.00 0.00 7.96 -2.64 -0.02 -0.02 16 8 N -0.44 -5.67 4.86 -231.13 -1.12 -6.79 16 9 C 0.06 0.71 5.24 -4.98 -0.03 0.69 16 10 C -0.11 -1.60 9.55 -36.07 -0.34 -1.95 16 11 C -0.12 -1.58 10.43 28.97 0.30 -1.28 16 12 Cl -0.09 -1.37 29.10 -51.86 -1.51 -2.88 16 13 C 0.53 9.88 7.23 -10.98 -0.08 9.80 16 14 O -0.49 -10.89 14.88 5.56 0.08 -10.80 16 15 C -0.15 -3.05 4.71 36.01 0.17 -2.88 16 16 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 17 C -0.53 -15.34 9.50 30.94 0.29 -15.05 16 18 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 19 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16 20 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 21 Si 0.92 21.67 29.55 -169.99 -5.02 16.64 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 27 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 28 H 0.09 1.21 7.15 -51.93 -0.37 0.84 16 29 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 30 H 0.09 0.90 7.92 -51.93 -0.41 0.48 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.55 7.48 -51.93 -0.39 0.16 16 34 H 0.04 0.43 7.04 -51.93 -0.37 0.07 16 35 H 0.09 1.11 8.08 -51.93 -0.42 0.69 16 36 H 0.14 2.55 8.06 -52.49 -0.42 2.12 16 37 H 0.14 1.36 7.84 -52.48 -0.41 0.95 16 38 H 0.08 1.59 7.40 -51.92 -0.38 1.20 16 39 H 0.08 1.62 8.11 -51.92 -0.42 1.20 16 40 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 363.82 15.07 5.48 5.48 Total: -1.00 -34.20 363.82 -9.73 -43.92 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.99 Total: -0.06 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 0.35 Total: -7.17 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: -0.90 Total: -41.38 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -1.51 Total: -2.88 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.20 -9.73 -43.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230819386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.240 kcal (2) G-P(sol) polarization free energy of solvation -34.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds