Wall clock time and date at job start Tue Mar 31 2020 11:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.09002 * 112.95341 * 285.33011 * 4 3 2 6 6 C 1.53941 * 113.75723 * 153.68970 * 4 3 2 7 7 C 1.53940 * 86.33802 * 221.95783 * 6 4 3 8 8 N 1.47957 * 113.76271 * 56.98076 * 4 3 2 9 9 C 1.46896 * 110.99994 * 251.90165 * 8 4 3 10 10 C 1.50699 * 109.47156 * 169.99763 * 9 8 4 11 11 C 1.31164 * 119.99974 * 125.00110 * 10 9 8 12 12 Cl 1.73602 * 120.00088 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 14 14 O 1.21279 * 120.00410 * 179.97438 * 13 2 1 15 15 C 1.50703 * 119.99541 * 359.97438 * 13 2 1 16 16 S 1.81004 * 109.46790 * 180.02562 * 15 13 2 17 17 C 1.76197 * 99.99958 * 180.02562 * 16 15 13 18 18 H 1.08008 * 119.99914 * 0.02562 * 17 16 15 19 19 C 1.38802 * 120.00243 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99782 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00188 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47104 * 89.99919 * 21 19 17 23 23 H 1.48498 * 109.46993 * 210.00231 * 21 19 17 24 24 H 1.48504 * 109.47061 * 330.00171 * 21 19 17 25 25 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 26 26 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 27 27 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 28 28 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 29 29 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 30 30 H 1.09001 * 113.73490 * 336.31423 * 6 4 3 31 31 H 1.08998 * 113.73515 * 107.49888 * 6 4 3 32 32 H 1.08998 * 113.76069 * 138.03458 * 7 6 4 33 33 H 1.08992 * 113.75756 * 269.29245 * 7 6 4 34 34 H 1.08999 * 109.47175 * 289.99629 * 9 8 4 35 35 H 1.09005 * 109.47433 * 49.99571 * 9 8 4 36 36 H 1.07993 * 120.00272 * 305.00063 * 10 9 8 37 37 H 1.08007 * 119.99982 * 359.97438 * 11 10 9 38 38 H 1.08996 * 109.47057 * 299.99739 * 15 13 2 39 39 H 1.08996 * 109.47084 * 60.00703 * 15 13 2 40 40 H 0.96994 * 120.00208 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5600 2.1004 1.9318 6 6 3.6922 2.6083 1.6062 7 6 3.9989 1.7858 2.8707 8 7 3.1874 0.7122 2.2505 9 6 2.3029 0.0807 3.2387 10 6 3.0103 -1.0907 3.8700 11 6 3.1323 -1.1579 5.1742 12 17 3.9478 -2.5070 5.9014 13 6 2.1389 -1.1672 -0.0005 14 8 3.3517 -1.1672 -0.0010 15 6 1.3854 -2.4723 -0.0005 16 16 2.5616 -3.8480 -0.0005 17 6 1.4415 -5.2082 -0.0013 18 1 0.3762 -5.0305 -0.0020 19 6 1.9282 -6.5081 -0.0020 20 7 3.2266 -6.7247 -0.0017 21 14 0.7408 -7.9501 -0.0036 22 1 0.4267 -8.3311 -1.4040 23 1 1.3618 -9.1034 0.6959 24 1 -0.5102 -7.5619 0.6962 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5139 28 1 3.1499 1.1384 -0.5139 29 1 1.6084 2.0284 -0.5139 30 1 4.4303 2.4860 0.8135 31 1 3.4538 3.6528 1.8073 32 1 5.0527 1.5314 2.9842 33 1 3.5608 2.1980 3.7796 34 1 2.0426 0.8062 4.0094 35 1 1.3952 -0.2662 2.7448 36 1 3.4168 -1.8748 3.2486 37 1 2.7261 -0.3735 5.7957 38 1 0.7591 -2.5302 0.8897 39 1 0.7585 -2.5298 -0.8903 40 1 3.5668 -7.6330 -0.0026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230819386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:16 Heat of formation + Delta-G solvation = -4.754282 kcal Electronic energy + Delta-G solvation = -22696.912584 eV Core-core repulsion = 19278.847719 eV Total energy + Delta-G solvation = -3418.064865 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34290 -39.98777 -37.65342 -36.33530 -35.09821 -34.57643 -31.73548 -30.21911 -29.10409 -27.66700 -27.15012 -25.07453 -24.29369 -21.15489 -20.72921 -20.23691 -19.45811 -17.90128 -17.38610 -17.18644 -16.94700 -16.87189 -16.36459 -15.90581 -15.67506 -15.16726 -14.89165 -14.56000 -14.26975 -14.07936 -13.91729 -13.40160 -13.35035 -13.17478 -13.10095 -13.00789 -12.90280 -12.71235 -12.52509 -12.46347 -12.16849 -11.88560 -11.71182 -11.65262 -11.62979 -11.13732 -10.62464 -10.21433 -10.02309 -9.77465 -9.30329 -8.62810 -8.33717 -6.10259 0.92193 1.28079 1.40422 1.40626 1.47208 1.57994 1.84542 2.22544 2.30586 3.00158 3.05591 3.33036 3.64152 3.83823 3.86966 3.92458 4.04596 4.22827 4.29323 4.36219 4.37714 4.41591 4.45202 4.51765 4.52502 4.66536 4.75465 4.85945 4.96729 5.01139 5.02748 5.20126 5.33498 5.33988 5.41260 5.53699 5.79878 6.19791 6.22026 6.48003 7.07504 7.42265 8.75374 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010601 B = 0.004653 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.512706 B = 6016.447730 C = 7924.085031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.611 5.611 3 C 0.134 3.866 4 C 0.018 3.982 5 H 0.104 0.896 6 C -0.122 4.122 7 C 0.000 4.000 8 N -0.488 5.488 9 C 0.068 3.932 10 C -0.129 4.129 11 C -0.105 4.105 12 Cl -0.116 7.116 13 C 0.534 3.466 14 O -0.539 6.539 15 C -0.123 4.123 16 S -0.145 6.145 17 C -0.546 4.546 18 H 0.079 0.921 19 C 0.015 3.985 20 N -0.911 5.911 21 Si 0.994 3.006 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.258 1.258 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.177 0.823 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.110 22.922 7.051 25.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.346 5.346 3 C 0.011 3.989 4 C -0.092 4.092 5 H 0.121 0.879 6 C -0.160 4.160 7 C -0.128 4.128 8 N -0.211 5.211 9 C -0.060 4.060 10 C -0.149 4.149 11 C -0.150 4.150 12 Cl -0.087 7.087 13 C 0.321 3.679 14 O -0.414 6.414 15 C -0.274 4.274 16 S 0.082 5.918 17 C -0.693 4.693 18 H 0.097 0.903 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.816 3.184 22 H -0.192 1.192 23 H -0.204 1.204 24 H -0.182 1.182 25 H 0.085 0.915 26 H 0.120 0.880 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.134 0.866 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.194 0.806 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.821 22.140 6.793 23.879 hybrid contribution -1.903 -1.112 0.406 2.241 sum -7.724 21.028 7.199 23.530 Atomic orbital electron populations 1.22021 0.77672 1.04241 1.02991 1.47693 1.07785 1.04804 1.74308 1.21535 0.97409 0.84407 0.95541 1.23984 0.97607 0.92052 0.95530 0.87859 1.23225 0.96320 0.99054 0.97406 1.24014 0.99733 0.91579 0.97513 1.68668 1.16060 1.20683 1.15719 1.21553 0.95219 0.94054 0.95210 1.23082 0.97977 0.99132 0.94713 1.24614 1.01841 0.93319 0.95216 1.98373 1.78684 1.47668 1.84024 1.19800 0.87325 0.84956 0.75864 1.90697 1.15165 1.86995 1.48561 1.23365 1.02665 0.96171 1.05205 1.85573 1.12341 0.96948 1.96913 1.23190 0.94563 0.92941 1.58653 0.90335 1.26082 0.97483 1.01583 0.93813 1.70188 1.14101 1.22346 1.48171 0.85018 0.78002 0.76519 0.78863 1.19153 1.20351 1.18216 0.91535 0.88001 0.91720 0.92273 0.86603 0.90311 0.87923 0.91228 0.89333 0.90592 0.90558 0.89790 0.80609 0.88676 0.88546 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 10.24 127.77 1.31 2.50 16 2 N -0.61 -15.29 2.83 -846.74 -2.40 -17.69 16 3 C 0.13 2.68 5.59 86.38 0.48 3.17 16 4 C 0.02 0.31 3.55 45.02 0.16 0.47 16 5 H 0.10 1.20 7.92 -2.39 -0.02 1.18 16 6 C -0.12 -1.80 7.84 31.24 0.25 -1.55 16 7 C 0.00 0.00 7.96 86.36 0.69 0.69 16 8 N -0.49 -12.00 4.86 -885.16 -4.30 -16.30 16 9 C 0.07 1.56 5.24 85.56 0.45 2.01 16 10 C -0.13 -3.83 9.55 25.48 0.24 -3.58 16 11 C -0.11 -2.62 10.43 67.62 0.71 -1.92 16 12 Cl -0.12 -3.43 29.10 -2.72 -0.08 -3.51 16 13 C 0.53 20.06 7.23 87.66 0.63 20.70 16 14 O -0.54 -25.18 14.88 -3.02 -0.05 -25.23 16 15 C -0.12 -5.08 4.71 71.24 0.34 -4.74 16 16 S -0.15 -8.28 20.57 -56.49 -1.16 -9.44 16 17 C -0.55 -31.97 9.50 67.95 0.65 -31.33 16 18 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 19 C 0.02 0.88 5.49 84.86 0.47 1.35 16 20 N -0.91 -57.46 13.22 21.65 0.29 -57.17 16 21 Si 0.99 44.70 29.55 68.60 2.03 46.72 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.10 0.94 8.07 -2.39 -0.02 0.92 16 27 H 0.06 1.19 6.44 -2.38 -0.02 1.17 16 28 H 0.06 1.59 7.15 -2.39 -0.02 1.57 16 29 H 0.12 1.38 8.07 -2.38 -0.02 1.37 16 30 H 0.08 1.43 7.92 -2.39 -0.02 1.41 16 31 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 1.18 7.48 -2.39 -0.02 1.17 16 34 H 0.08 1.21 7.04 -2.39 -0.02 1.20 16 35 H 0.08 1.85 8.08 -2.38 -0.02 1.83 16 36 H 0.08 3.43 8.06 -2.91 -0.02 3.40 16 37 H 0.18 2.95 7.84 -2.91 -0.02 2.93 16 38 H 0.09 3.66 7.40 -2.40 -0.02 3.64 16 39 H 0.10 3.70 8.11 -2.40 -0.02 3.68 16 40 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -80.91 363.82 1.71 -79.20 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 1.02 Total: 15.67 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 6.36 Total: -12.25 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -6.42 Total: -91.17 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.05 Total: -25.23 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.44 kcal Atomic # 17 Polarization: -3.43 SS G_CDS: -0.08 Total: -3.51 kcal Total: -80.91 1.71 -79.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230819386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.443 kcal (2) G-P(sol) polarization free energy of solvation -80.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds