Wall clock time and date at job start Tue Mar 31 2020 11:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86801 * 120.00075 * 2 1 4 4 H 1.48502 * 109.47150 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47045 * 299.99946 * 3 2 1 6 6 H 1.48492 * 109.47241 * 59.99822 * 3 2 1 7 7 C 1.39930 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00521 * 198.22246 * 7 2 1 9 9 C 1.41227 * 120.00173 * 18.22512 * 7 2 1 10 10 C 1.39937 * 119.48048 * 25.70543 * 9 7 2 11 11 C 1.39883 * 120.26959 * 179.97438 * 10 9 7 12 12 C 1.40875 * 121.07296 * 180.02562 * 11 10 9 13 13 C 1.36178 * 119.62162 * 179.97438 * 12 11 10 14 14 C 1.39239 * 120.94494 * 0.04764 * 13 12 11 15 15 C 1.36543 * 120.96899 * 359.97438 * 14 13 12 16 16 C 1.39799 * 119.73580 * 359.97438 * 15 14 13 17 17 C 1.46371 * 121.13242 * 180.31014 * 16 15 14 18 18 C 1.48045 * 120.39885 * 359.96513 * 17 16 15 19 19 C 1.39625 * 119.97891 * 309.95816 * 18 17 16 20 20 C 1.37607 * 120.01908 * 179.72725 * 19 18 17 21 21 C 1.39799 * 119.97597 * 0.52793 * 20 19 18 22 22 C 1.47566 * 120.01512 * 179.72596 * 21 20 19 23 23 O 1.21495 * 119.99943 * 180.02562 * 22 21 20 24 24 O 1.34740 * 120.00561 * 0.02562 * 22 21 20 25 25 C 1.39792 * 119.96380 * 359.74296 * 21 20 19 26 26 C 1.37606 * 119.97636 * 0.02562 * 25 21 20 27 27 C 1.37757 * 119.19949 * 180.19231 * 17 16 15 28 28 H 0.97003 * 119.99996 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.86502 * 359.97438 * 10 9 7 30 30 H 1.08006 * 120.18866 * 359.95081 * 12 11 10 31 31 H 1.08000 * 119.53085 * 180.02562 * 13 12 11 32 32 H 1.07999 * 119.51857 * 179.97438 * 14 13 12 33 33 H 1.07999 * 120.13395 * 180.02562 * 15 14 13 34 34 H 1.08004 * 119.99602 * 0.02562 * 19 18 17 35 35 H 1.07998 * 120.01355 * 180.27297 * 20 19 18 36 36 H 0.96702 * 117.00568 * 180.02562 * 24 22 21 37 37 H 1.07996 * 120.00893 * 179.97438 * 25 21 20 38 38 H 1.08005 * 119.98486 * 179.97438 * 26 25 21 39 39 H 1.08002 * 119.78352 * 179.76574 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3964 1.2124 7 6 2.0079 -1.2118 0.0005 8 1 3.0473 -1.2352 0.2930 9 6 1.3550 -2.4044 -0.3814 10 6 0.2529 -2.3411 -1.2415 11 6 -0.4058 -3.5121 -1.6309 12 6 -1.5165 -3.4680 -2.4964 13 6 -2.1353 -4.6263 -2.8568 14 6 -1.6867 -5.8557 -2.3812 15 6 -0.6136 -5.9348 -1.5407 16 6 0.0482 -4.7672 -1.1493 17 6 1.2058 -4.8170 -0.2549 18 6 1.7016 -6.1145 0.2571 19 6 0.8127 -7.0208 0.8385 20 6 1.2717 -8.2295 1.3096 21 6 2.6303 -8.5452 1.2160 22 6 3.1245 -9.8386 1.7264 23 8 4.3054 -10.1125 1.6452 24 8 2.2662 -10.7159 2.2824 25 6 3.5205 -7.6349 0.6388 26 6 3.0588 -6.4287 0.1640 27 6 1.8254 -3.6415 0.1085 28 1 -0.4850 0.8401 -0.0004 29 1 -0.0904 -1.3842 -1.6061 30 1 -1.8754 -2.5210 -2.8716 31 1 -2.9864 -4.5909 -3.5207 32 1 -2.1950 -6.7600 -2.6816 33 1 -0.2768 -6.8955 -1.1803 34 1 -0.2364 -6.7752 0.9142 35 1 0.5833 -8.9322 1.7553 36 1 2.6367 -11.5497 2.6028 37 1 4.5703 -7.8779 0.5665 38 1 3.7465 -5.7251 -0.2816 39 1 2.6779 -3.6669 0.7710 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236064147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:38 Heat of formation + Delta-G solvation = -39.249191 kcal Electronic energy + Delta-G solvation = -24550.746765 eV Core-core repulsion = 20965.882236 eV Total energy + Delta-G solvation = -3584.864530 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.42491 -39.31708 -38.14190 -36.17408 -35.78301 -33.80310 -32.21406 -31.06678 -30.13800 -29.59552 -28.03514 -25.47298 -24.46230 -22.70993 -22.17940 -21.48558 -20.99326 -20.05286 -18.17471 -17.83158 -17.37100 -16.18340 -16.14748 -15.68104 -15.19373 -15.09664 -14.72811 -14.34940 -14.33812 -13.62626 -13.35367 -13.28033 -12.95160 -12.64431 -12.56619 -12.31575 -12.05239 -11.91940 -11.65686 -11.57874 -11.25218 -11.09423 -10.98699 -10.82088 -10.68343 -10.54454 -10.18849 -9.77665 -9.67861 -9.29718 -8.95019 -8.89792 -8.49425 -7.60533 -6.96668 -6.78937 -4.49383 0.61936 1.48089 1.62423 2.19593 2.51515 2.89119 2.95218 2.98379 3.02774 3.15570 3.78165 3.87121 3.96593 4.69875 4.85364 4.98443 5.03176 5.17040 5.44957 5.46476 5.60153 5.63496 5.68470 5.80891 5.89526 6.07418 6.14162 6.25624 6.27957 6.37438 6.40845 6.49998 6.53741 6.65011 6.78806 6.88669 6.92448 6.96702 7.16532 7.28350 7.33800 7.42055 7.55017 7.79594 7.79780 7.95122 8.03821 8.39947 8.62475 8.68037 9.97617 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.013389 B = 0.003655 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.756820 B = 7659.774767 C = 9410.109749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.448 4.448 8 H 0.082 0.918 9 C 0.097 3.903 10 C -0.196 4.196 11 C -0.001 4.001 12 C -0.134 4.134 13 C -0.120 4.120 14 C -0.185 4.185 15 C -0.087 4.087 16 C -0.113 4.113 17 C -0.073 4.073 18 C 0.033 3.967 19 C -0.130 4.130 20 C -0.059 4.059 21 C -0.152 4.152 22 C 0.530 3.470 23 O -0.522 6.522 24 O -0.514 6.514 25 C -0.050 4.050 26 C -0.128 4.128 27 C -0.116 4.116 28 H 0.284 0.716 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.411 0.589 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.645 -10.726 1.237 10.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.146 4.146 3 Si 0.732 3.268 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.477 4.477 8 H 0.100 0.900 9 C 0.094 3.906 10 C -0.216 4.216 11 C -0.002 4.002 12 C -0.153 4.153 13 C -0.138 4.138 14 C -0.204 4.204 15 C -0.105 4.105 16 C -0.114 4.114 17 C -0.073 4.073 18 C 0.033 3.967 19 C -0.148 4.148 20 C -0.077 4.077 21 C -0.153 4.153 22 C 0.376 3.624 23 O -0.413 6.413 24 O -0.325 6.325 25 C -0.068 4.068 26 C -0.146 4.146 27 C -0.134 4.134 28 H 0.095 0.905 29 H 0.140 0.860 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.269 0.731 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.603 -10.255 1.107 10.332 hybrid contribution 0.456 0.262 0.289 0.600 sum 1.059 -9.992 1.396 10.145 Atomic orbital electron populations 1.69828 1.07662 1.29581 1.33017 1.25927 0.94776 1.01530 0.92374 0.86245 0.81031 0.80710 0.78771 1.18228 1.19512 1.19835 1.19685 0.98290 0.91268 1.38425 0.90010 1.17381 0.92211 0.91383 0.89634 1.21226 1.01333 0.95996 1.03030 1.17908 0.94243 0.92864 0.95144 1.20933 0.96832 0.97390 1.00102 1.20507 0.99700 0.92978 1.00606 1.20370 1.00142 0.96753 1.03115 1.20787 0.95580 0.96896 0.97267 1.18414 0.97243 0.92815 1.02889 1.19429 0.97050 0.90663 1.00134 1.19286 0.92692 0.93071 0.91661 1.21378 1.00543 0.93410 0.99454 1.21327 0.93989 0.96412 0.95977 1.18953 0.95005 0.92897 1.08490 1.20986 0.83378 0.84189 0.73828 1.90870 1.18014 1.77610 1.54791 1.84586 1.44178 1.31385 1.72379 1.21125 0.99528 0.92225 0.93912 1.21288 0.95203 0.96700 1.01393 1.21449 0.99907 0.91902 1.00166 0.90530 0.85963 0.87222 0.88043 0.88107 0.87341 0.84731 0.84715 0.73119 0.84743 0.84677 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.81 11.00 55.55 0.61 -18.20 16 2 C 0.07 1.71 5.08 -17.35 -0.09 1.62 16 3 Si 0.91 17.38 29.60 -169.99 -5.03 12.35 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 6 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.45 -10.85 8.99 -37.81 -0.34 -11.19 16 8 H 0.08 1.88 7.91 -52.49 -0.42 1.46 16 9 C 0.10 2.34 5.55 -107.03 -0.59 1.75 16 10 C -0.20 -4.79 8.38 -38.33 -0.32 -5.11 16 11 C 0.00 -0.03 5.74 -106.89 -0.61 -0.64 16 12 C -0.13 -2.73 9.78 -39.33 -0.38 -3.12 16 13 C -0.12 -2.17 9.95 -39.95 -0.40 -2.56 16 14 C -0.19 -3.27 9.96 -39.82 -0.40 -3.67 16 15 C -0.09 -1.63 8.68 -39.61 -0.34 -1.97 16 16 C -0.11 -2.39 5.88 -104.64 -0.62 -3.00 16 17 C -0.07 -1.46 5.62 -102.78 -0.58 -2.04 16 18 C 0.03 0.55 5.10 -104.84 -0.53 0.02 16 19 C -0.13 -1.93 7.65 -39.29 -0.30 -2.23 16 20 C -0.06 -0.77 9.60 -39.23 -0.38 -1.14 16 21 C -0.15 -2.07 5.88 -104.93 -0.62 -2.69 16 22 C 0.53 6.80 8.27 34.54 0.29 7.09 16 23 O -0.52 -7.94 17.12 -19.26 -0.33 -8.27 16 24 O -0.51 -4.85 12.67 -40.60 -0.51 -5.37 16 25 C -0.05 -0.69 9.58 -39.23 -0.38 -1.06 16 26 C -0.13 -1.92 9.47 -39.29 -0.37 -2.29 16 27 C -0.12 -2.51 9.16 -38.66 -0.35 -2.86 16 28 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 29 H 0.12 3.12 6.15 -52.49 -0.32 2.80 16 30 H 0.11 2.09 8.06 -52.48 -0.42 1.67 16 31 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.11 1.80 5.69 -52.49 -0.30 1.50 16 34 H 0.13 1.96 7.30 -52.48 -0.38 1.58 16 35 H 0.14 1.46 7.60 -52.49 -0.40 1.06 16 36 H 0.41 1.93 9.11 45.56 0.42 2.34 16 37 H 0.13 1.71 7.64 -52.49 -0.40 1.31 16 38 H 0.14 1.91 8.03 -52.48 -0.42 1.49 16 39 H 0.11 2.10 8.02 -52.49 -0.42 1.68 16 LS Contribution 339.94 15.07 5.12 5.12 Total: -1.00 -27.97 339.94 -10.51 -38.48 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -3.05 Total: 10.98 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: -7.32 Total: -35.10 kcal Atomic # 7 Polarization: -18.81 SS G_CDS: 0.61 Total: -18.20 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.84 Total: -13.63 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.97 -10.51 -38.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236064147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.772 kcal (2) G-P(sol) polarization free energy of solvation -27.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds