Wall clock time and date at job start Tue Mar 31 2020 11:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86801 * 120.00075 * 2 1 4 4 H 1.48502 * 109.47150 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47045 * 299.99946 * 3 2 1 6 6 H 1.48492 * 109.47241 * 59.99822 * 3 2 1 7 7 C 1.39930 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00521 * 198.22246 * 7 2 1 9 9 C 1.41227 * 120.00173 * 18.22512 * 7 2 1 10 10 C 1.39937 * 119.48048 * 25.70543 * 9 7 2 11 11 C 1.39883 * 120.26959 * 179.97438 * 10 9 7 12 12 C 1.40875 * 121.07296 * 180.02562 * 11 10 9 13 13 C 1.36178 * 119.62162 * 179.97438 * 12 11 10 14 14 C 1.39239 * 120.94494 * 0.04764 * 13 12 11 15 15 C 1.36543 * 120.96899 * 359.97438 * 14 13 12 16 16 C 1.39799 * 119.73580 * 359.97438 * 15 14 13 17 17 C 1.46371 * 121.13242 * 180.31014 * 16 15 14 18 18 C 1.48045 * 120.39885 * 359.96513 * 17 16 15 19 19 C 1.39625 * 119.97891 * 309.95816 * 18 17 16 20 20 C 1.37607 * 120.01908 * 179.72725 * 19 18 17 21 21 C 1.39799 * 119.97597 * 0.52793 * 20 19 18 22 22 C 1.47566 * 120.01512 * 179.72596 * 21 20 19 23 23 O 1.21495 * 119.99943 * 180.02562 * 22 21 20 24 24 O 1.34740 * 120.00561 * 0.02562 * 22 21 20 25 25 C 1.39792 * 119.96380 * 359.74296 * 21 20 19 26 26 C 1.37606 * 119.97636 * 0.02562 * 25 21 20 27 27 C 1.37757 * 119.19949 * 180.19231 * 17 16 15 28 28 H 0.97003 * 119.99996 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.86502 * 359.97438 * 10 9 7 30 30 H 1.08006 * 120.18866 * 359.95081 * 12 11 10 31 31 H 1.08000 * 119.53085 * 180.02562 * 13 12 11 32 32 H 1.07999 * 119.51857 * 179.97438 * 14 13 12 33 33 H 1.07999 * 120.13395 * 180.02562 * 15 14 13 34 34 H 1.08004 * 119.99602 * 0.02562 * 19 18 17 35 35 H 1.07998 * 120.01355 * 180.27297 * 20 19 18 36 36 H 0.96702 * 117.00568 * 180.02562 * 24 22 21 37 37 H 1.07996 * 120.00893 * 179.97438 * 25 21 20 38 38 H 1.08005 * 119.98486 * 179.97438 * 26 25 21 39 39 H 1.08002 * 119.78352 * 179.76574 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3964 1.2124 7 6 2.0079 -1.2118 0.0005 8 1 3.0473 -1.2352 0.2930 9 6 1.3550 -2.4044 -0.3814 10 6 0.2529 -2.3411 -1.2415 11 6 -0.4058 -3.5121 -1.6309 12 6 -1.5165 -3.4680 -2.4964 13 6 -2.1353 -4.6263 -2.8568 14 6 -1.6867 -5.8557 -2.3812 15 6 -0.6136 -5.9348 -1.5407 16 6 0.0482 -4.7672 -1.1493 17 6 1.2058 -4.8170 -0.2549 18 6 1.7016 -6.1145 0.2571 19 6 0.8127 -7.0208 0.8385 20 6 1.2717 -8.2295 1.3096 21 6 2.6303 -8.5452 1.2160 22 6 3.1245 -9.8386 1.7264 23 8 4.3054 -10.1125 1.6452 24 8 2.2662 -10.7159 2.2824 25 6 3.5205 -7.6349 0.6388 26 6 3.0588 -6.4287 0.1640 27 6 1.8254 -3.6415 0.1085 28 1 -0.4850 0.8401 -0.0004 29 1 -0.0904 -1.3842 -1.6061 30 1 -1.8754 -2.5210 -2.8716 31 1 -2.9864 -4.5909 -3.5207 32 1 -2.1950 -6.7600 -2.6816 33 1 -0.2768 -6.8955 -1.1803 34 1 -0.2364 -6.7752 0.9142 35 1 0.5833 -8.9322 1.7553 36 1 2.6367 -11.5497 2.6028 37 1 4.5703 -7.8779 0.5665 38 1 3.7465 -5.7251 -0.2816 39 1 2.6779 -3.6669 0.7710 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236064147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:37 Heat of formation + Delta-G solvation = -51.642668 kcal Electronic energy + Delta-G solvation = -24551.284187 eV Core-core repulsion = 20965.882236 eV Total energy + Delta-G solvation = -3585.401951 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.46599 -40.71914 -39.40267 -37.40753 -37.07900 -35.37170 -33.73009 -32.21549 -31.57688 -31.15008 -29.54419 -27.14820 -25.70480 -23.94109 -23.63634 -22.91401 -22.32045 -21.48688 -19.41261 -19.12594 -18.42480 -17.82132 -17.65346 -16.71509 -16.64279 -16.51642 -15.92647 -15.83974 -15.50548 -14.96664 -14.76330 -14.48210 -14.20167 -14.18673 -14.06189 -13.76824 -13.48909 -13.28763 -13.09712 -12.82412 -12.58277 -12.57420 -12.49384 -12.15451 -12.06197 -11.75382 -11.74565 -11.37511 -11.27318 -10.94411 -10.47585 -10.02874 -9.83800 -9.25817 -8.68585 -8.39936 -6.31316 -0.57522 0.12053 0.36864 0.58755 1.32499 1.35948 1.39188 1.52467 1.67860 2.07128 2.17215 2.29384 2.76282 3.03077 3.64829 3.71217 3.85256 3.94922 4.08954 4.16743 4.31552 4.33004 4.36378 4.48903 4.63248 4.73233 4.75696 4.90505 4.92239 5.01458 5.13197 5.18211 5.21566 5.24973 5.30833 5.50574 5.57212 5.58557 5.69850 5.71925 5.79696 5.86419 5.95125 6.07205 6.22914 6.43799 6.64245 6.85544 6.93892 6.97998 8.28326 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.013389 B = 0.003655 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.756820 B = 7659.774767 C = 9410.109749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.035 3.965 3 Si 0.979 3.021 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.486 4.486 8 H 0.082 0.918 9 C 0.075 3.925 10 C -0.227 4.227 11 C -0.024 4.024 12 C -0.160 4.160 13 C -0.107 4.107 14 C -0.176 4.176 15 C -0.089 4.089 16 C -0.132 4.132 17 C -0.056 4.056 18 C 0.007 3.993 19 C -0.129 4.129 20 C -0.044 4.044 21 C -0.151 4.151 22 C 0.539 3.461 23 O -0.549 6.549 24 O -0.501 6.501 25 C -0.050 4.050 26 C -0.128 4.128 27 C -0.143 4.143 28 H 0.288 0.712 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.165 0.835 36 H 0.434 0.566 37 H 0.145 0.855 38 H 0.135 0.865 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.025 -13.951 1.369 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.181 4.181 3 Si 0.800 3.200 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.515 4.515 8 H 0.100 0.900 9 C 0.072 3.928 10 C -0.248 4.248 11 C -0.024 4.024 12 C -0.179 4.179 13 C -0.125 4.125 14 C -0.194 4.194 15 C -0.107 4.107 16 C -0.132 4.132 17 C -0.056 4.056 18 C 0.007 3.993 19 C -0.147 4.147 20 C -0.062 4.062 21 C -0.152 4.152 22 C 0.385 3.615 23 O -0.442 6.442 24 O -0.315 6.315 25 C -0.068 4.068 26 C -0.146 4.146 27 C -0.161 4.161 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.182 0.818 36 H 0.296 0.704 37 H 0.163 0.837 38 H 0.153 0.847 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.081 -13.521 1.248 13.578 hybrid contribution 0.546 0.906 0.223 1.081 sum 0.464 -12.614 1.471 12.708 Atomic orbital electron populations 1.69902 1.09095 1.30570 1.34402 1.26738 0.95425 1.04530 0.91440 0.85194 0.79619 0.76317 0.78864 1.17879 1.19156 1.19070 1.19926 0.98589 0.92420 1.40535 0.90015 1.17694 0.92555 0.92658 0.89871 1.21112 1.02814 0.95909 1.04928 1.18198 0.95127 0.93083 0.95968 1.21082 0.97132 0.98793 1.00879 1.20938 0.99732 0.92176 0.99683 1.20889 0.99176 0.98015 1.01285 1.21066 0.95570 0.96827 0.97193 1.18781 0.98033 0.93263 1.03163 1.19719 0.95745 0.91787 0.98336 1.19183 0.93821 0.92245 0.94054 1.21405 1.00355 0.93615 0.99295 1.21535 0.94116 0.95867 0.94711 1.19181 0.95260 0.93296 1.07490 1.20740 0.83044 0.84196 0.73471 1.90876 1.19205 1.78157 1.55933 1.84522 1.43277 1.32228 1.71494 1.21224 1.00264 0.91715 0.93557 1.21289 0.94559 0.97320 1.01457 1.21513 1.01128 0.91916 1.01574 0.90085 0.88345 0.87265 0.84467 0.84051 0.84884 0.84425 0.81779 0.70401 0.83732 0.84711 0.86902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.12 11.00 21.82 0.24 -41.88 16 2 C 0.03 1.70 5.08 85.25 0.43 2.14 16 3 Si 0.98 37.30 29.60 68.60 2.03 39.33 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 6 H -0.27 -9.71 7.11 99.48 0.71 -9.01 16 7 C -0.49 -25.26 8.99 23.41 0.21 -25.05 16 8 H 0.08 4.04 7.91 -2.91 -0.02 4.01 16 9 C 0.07 3.90 5.55 -21.43 -0.12 3.78 16 10 C -0.23 -12.00 8.38 23.08 0.19 -11.81 16 11 C -0.02 -1.11 5.74 -21.33 -0.12 -1.24 16 12 C -0.16 -6.62 9.78 22.44 0.22 -6.40 16 13 C -0.11 -3.62 9.95 22.03 0.22 -3.40 16 14 C -0.18 -5.54 9.96 22.11 0.22 -5.32 16 15 C -0.09 -3.10 8.68 22.25 0.19 -2.91 16 16 C -0.13 -5.61 5.88 -19.88 -0.12 -5.73 16 17 C -0.06 -2.29 5.62 -18.67 -0.10 -2.39 16 18 C 0.01 0.23 5.10 -20.01 -0.10 0.13 16 19 C -0.13 -3.52 7.65 22.46 0.17 -3.35 16 20 C -0.04 -0.99 9.60 22.50 0.22 -0.78 16 21 C -0.15 -3.64 5.88 -20.06 -0.12 -3.76 16 22 C 0.54 12.00 8.27 70.28 0.58 12.58 16 23 O -0.55 -15.25 17.12 19.85 0.34 -14.91 16 24 O -0.50 -7.29 12.67 -56.50 -0.72 -8.01 16 25 C -0.05 -1.28 9.58 22.50 0.22 -1.06 16 26 C -0.13 -3.77 9.47 22.46 0.21 -3.55 16 27 C -0.14 -6.56 9.16 22.86 0.21 -6.35 16 28 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 29 H 0.10 5.51 6.15 -2.91 -0.02 5.50 16 30 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 31 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 32 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 33 H 0.13 3.95 5.69 -2.91 -0.02 3.93 16 34 H 0.14 3.67 7.30 -2.91 -0.02 3.64 16 35 H 0.16 2.72 7.60 -2.91 -0.02 2.70 16 36 H 0.43 2.19 9.11 -74.06 -0.67 1.51 16 37 H 0.14 3.43 7.64 -2.91 -0.02 3.41 16 38 H 0.14 3.87 8.03 -2.91 -0.02 3.85 16 39 H 0.11 4.80 8.02 -2.91 -0.02 4.78 16 Total: -1.00 -64.48 339.94 4.94 -59.54 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.44 Total: 30.40 kcal Atomic # 6 Polarization: -67.09 SS G_CDS: 2.61 Total: -64.47 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.24 Total: -41.88 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.38 Total: -22.92 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Total: -64.48 4.94 -59.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236064147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.896 kcal (2) G-P(sol) polarization free energy of solvation -64.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds