Wall clock time and date at job start Tue Mar 31 2020 12:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35978 * 117.00027 * 2 1 4 4 C 1.38673 * 119.94381 * 359.97438 * 3 2 1 5 5 C 1.37993 * 120.12998 * 180.02562 * 4 3 2 6 6 C 1.39423 * 120.01652 * 0.02562 * 5 4 3 7 7 C 1.48255 * 120.05310 * 180.02562 * 6 5 4 8 8 C 1.39305 * 120.13796 * 129.72142 * 7 6 5 9 9 C 1.37979 * 119.97017 * 179.72125 * 8 7 6 10 10 C 1.38682 * 120.24203 * 0.57811 * 9 8 7 11 11 F 1.35097 * 119.86001 * 179.71616 * 10 9 8 12 12 C 1.38330 * 120.27170 * 359.69999 * 10 9 8 13 13 C 1.38697 * 120.03189 * 359.97438 * 12 10 9 14 14 O 1.35669 * 120.12455 * 179.97438 * 13 12 10 15 15 C 1.34816 * 116.99918 * 354.40881 * 14 13 12 16 16 H 1.08003 * 119.99880 * 5.05239 * 15 14 13 17 17 C 1.38641 * 120.00160 * 185.06460 * 15 14 13 18 18 N 1.31568 * 119.99815 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00025 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47385 * 59.99509 * 19 17 15 21 21 H 1.48504 * 109.46913 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47109 * 299.99360 * 19 17 15 23 23 C 1.39413 * 119.89112 * 359.74586 * 6 5 4 24 24 C 1.38322 * 119.87400 * 0.52853 * 23 6 5 25 25 O 1.35994 * 120.01346 * 179.72375 * 24 23 6 26 26 C 1.42904 * 116.99472 * 359.72652 * 25 24 23 27 27 H 1.08991 * 109.47468 * 60.00339 * 1 2 3 28 28 H 1.09003 * 109.46587 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46823 * 299.99639 * 1 2 3 30 30 H 1.08000 * 119.93634 * 0.02562 * 4 3 2 31 31 H 1.07992 * 119.99402 * 179.97438 * 5 4 3 32 32 H 1.07998 * 120.01968 * 359.97438 * 8 7 6 33 33 H 1.08001 * 119.88049 * 180.29846 * 9 8 7 34 34 H 1.08011 * 119.98167 * 180.02562 * 12 10 9 35 35 H 0.96996 * 119.99537 * 180.02562 * 18 17 15 36 36 H 1.08004 * 120.06467 * 180.27163 * 23 6 5 37 37 H 1.09007 * 109.46533 * 180.02562 * 26 25 24 38 38 H 1.08999 * 109.47305 * 60.00125 * 26 25 24 39 39 H 1.08997 * 109.46908 * 299.99711 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2899 2.3738 -0.0005 5 6 1.9124 3.6054 -0.0011 6 6 3.3045 3.6833 -0.0016 7 6 3.9741 5.0060 -0.0016 8 6 4.9773 5.2821 0.9247 9 6 5.6021 6.5123 0.9179 10 6 5.2272 7.4811 -0.0009 11 9 5.8402 8.6849 0.0031 12 6 4.2283 7.2197 -0.9214 13 6 3.5972 5.9846 -0.9291 14 8 2.6170 5.7264 -1.8308 15 6 2.2225 6.7491 -2.6156 16 1 2.7379 7.6970 -2.5672 17 6 1.1549 6.5842 -3.4847 18 7 0.5272 5.4295 -3.5439 19 14 0.6079 8.0015 -4.5716 20 1 1.7298 8.4097 -5.4548 21 1 -0.5448 7.5712 -5.4032 22 1 0.2041 9.1500 -3.7215 23 6 4.0657 2.5153 0.0037 24 6 3.4370 1.2832 -0.0015 25 8 4.1768 0.1421 -0.0019 26 6 5.5982 0.2905 -0.0029 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2115 2.3151 -0.0005 31 1 1.3212 4.5091 -0.0019 32 1 5.2686 4.5322 1.6452 33 1 6.3830 6.7230 1.6335 34 1 3.9402 7.9775 -1.6351 35 1 -0.2194 5.3140 -4.1522 36 1 5.1442 2.5724 0.0078 37 1 6.0662 -0.6940 -0.0037 38 1 5.9068 0.8393 0.8868 39 1 5.9055 0.8392 -0.8932 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239615814.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:16 Heat of formation + Delta-G solvation = -109.460445 kcal Electronic energy + Delta-G solvation = -26199.942294 eV Core-core repulsion = 22181.263951 eV Total energy + Delta-G solvation = -4018.678343 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.86692 -41.58268 -40.73445 -39.35102 -38.34904 -37.41218 -34.32920 -32.81388 -31.31253 -30.93526 -29.71527 -28.03194 -27.73747 -27.36052 -24.12040 -23.75678 -22.76049 -22.10620 -20.09403 -19.60368 -19.08972 -18.14923 -17.66464 -17.10691 -16.98283 -16.81784 -16.59423 -16.53198 -16.09468 -15.97673 -15.70151 -15.43205 -15.32813 -15.07332 -14.88086 -14.23730 -14.01682 -13.92419 -13.56003 -13.38626 -13.03608 -12.88236 -12.75269 -12.46895 -12.32845 -12.18026 -12.09472 -12.02829 -11.99212 -11.75969 -11.46416 -10.82385 -9.92180 -9.57857 -9.18234 -8.51907 -8.48437 -6.16749 -0.06638 0.40686 0.52971 0.69458 1.34584 1.43307 1.48709 2.13997 2.37378 2.39999 2.57699 2.83278 3.08196 3.23901 3.47193 3.73098 3.87873 3.99501 4.10740 4.20454 4.28489 4.39056 4.40970 4.44342 4.46799 4.46989 4.55761 4.71032 4.73033 4.78174 4.84223 4.99070 5.05409 5.22004 5.26988 5.35470 5.41028 5.46788 5.71343 5.75443 5.96168 6.04490 6.13689 6.64464 6.94001 7.68064 8.70434 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.009665 B = 0.005225 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.285626 B = 5357.134110 C = 7671.640974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.325 6.325 3 C 0.081 3.919 4 C -0.169 4.169 5 C -0.093 4.093 6 C -0.029 4.029 7 C -0.139 4.139 8 C -0.024 4.024 9 C -0.218 4.218 10 C 0.136 3.864 11 F -0.146 7.146 12 C -0.285 4.285 13 C 0.156 3.844 14 O -0.193 6.193 15 C -0.421 4.421 16 H 0.097 0.903 17 C -0.008 4.008 18 N -0.900 5.900 19 Si 1.009 2.991 20 H -0.261 1.261 21 H -0.270 1.270 22 H -0.260 1.260 23 C -0.159 4.159 24 C 0.086 3.914 25 O -0.326 6.326 26 C 0.016 3.984 27 H 0.051 0.949 28 H 0.125 0.875 29 H 0.065 0.935 30 H 0.145 0.855 31 H 0.102 0.898 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.128 0.872 35 H 0.273 0.727 36 H 0.159 0.841 37 H 0.122 0.878 38 H 0.070 0.930 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.806 -6.928 8.820 12.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.239 6.239 3 C 0.035 3.965 4 C -0.187 4.187 5 C -0.111 4.111 6 C -0.029 4.029 7 C -0.141 4.141 8 C -0.042 4.042 9 C -0.238 4.238 10 C 0.117 3.883 11 F -0.125 7.125 12 C -0.305 4.305 13 C 0.103 3.897 14 O -0.097 6.097 15 C -0.497 4.497 16 H 0.114 0.886 17 C -0.208 4.208 18 N -0.536 5.536 19 Si 0.829 3.171 20 H -0.186 1.186 21 H -0.195 1.195 22 H -0.184 1.184 23 C -0.177 4.177 24 C 0.041 3.959 25 O -0.240 6.240 26 C -0.078 4.078 27 H 0.069 0.931 28 H 0.143 0.857 29 H 0.083 0.917 30 H 0.163 0.837 31 H 0.121 0.879 32 H 0.185 0.815 33 H 0.181 0.819 34 H 0.145 0.855 35 H 0.082 0.918 36 H 0.176 0.824 37 H 0.140 0.860 38 H 0.089 0.911 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.532 -7.590 8.641 12.763 hybrid contribution -0.578 1.523 -0.989 1.905 sum 4.954 -6.068 7.652 10.951 Atomic orbital electron populations 1.23312 0.76956 1.05484 1.01807 1.86076 1.22888 1.25686 1.89297 1.18393 0.89617 0.85239 1.03210 1.21044 1.00557 0.90899 1.06232 1.20871 0.94258 0.96905 0.99095 1.18311 0.92419 0.91683 1.00491 1.18191 1.03063 0.93207 0.99599 1.21011 0.91371 0.96375 0.95396 1.20964 1.06345 0.93614 1.02829 1.17637 0.92671 0.81184 0.96830 1.91431 1.81568 1.43473 1.96011 1.21019 1.03745 0.99800 1.05967 1.19486 0.88825 0.92343 0.89037 1.84010 1.46133 1.37314 1.42282 1.21725 1.16202 0.92690 1.19070 0.88562 1.26385 0.94937 1.00848 0.98628 1.70171 1.21206 1.25174 1.37022 0.84774 0.78380 0.76415 0.77510 1.18576 1.19482 1.18416 1.21190 1.00902 0.89299 1.06348 1.18155 0.88335 0.86314 1.03096 1.86110 1.20634 1.27899 1.89379 1.23363 0.76810 1.05457 1.02183 0.93054 0.85693 0.91672 0.83736 0.87938 0.81545 0.81936 0.85478 0.91762 0.82365 0.85960 0.91123 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.33 -10.64 10.27 -79.28 -0.81 -11.45 16 3 C 0.08 2.91 6.70 22.62 0.15 3.06 16 4 C -0.17 -6.29 9.02 22.32 0.20 -6.09 16 5 C -0.09 -3.90 8.77 22.50 0.20 -3.71 16 6 C -0.03 -1.13 5.28 -20.04 -0.11 -1.23 16 7 C -0.14 -5.52 5.49 -19.93 -0.11 -5.63 16 8 C -0.02 -0.72 9.50 22.47 0.21 -0.51 16 9 C -0.22 -6.53 10.01 22.31 0.22 -6.31 16 10 C 0.14 4.98 7.29 22.40 0.16 5.14 16 11 F -0.15 -5.11 17.26 44.97 0.78 -4.33 16 12 C -0.29 -12.44 9.13 22.40 0.20 -12.23 16 13 C 0.16 7.38 6.55 22.81 0.15 7.53 16 14 O -0.19 -10.83 8.09 -21.71 -0.18 -11.00 16 15 C -0.42 -23.47 9.49 67.92 0.64 -22.82 16 16 H 0.10 5.03 5.21 -2.91 -0.02 5.02 16 17 C -0.01 -0.42 5.49 84.83 0.47 0.04 16 18 N -0.90 -52.29 13.67 21.61 0.30 -52.00 16 19 Si 1.01 41.69 29.55 68.60 2.03 43.72 16 20 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 21 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 23 C -0.16 -5.32 8.49 22.57 0.19 -5.13 16 24 C 0.09 2.99 6.69 22.53 0.15 3.14 16 25 O -0.33 -10.00 10.28 -79.46 -0.82 -10.82 16 26 C 0.02 0.32 9.81 113.37 1.11 1.43 16 27 H 0.05 1.25 7.65 -2.39 -0.02 1.23 16 28 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.06 1.35 7.66 -2.39 -0.02 1.33 16 30 H 0.15 4.76 6.28 -2.91 -0.02 4.74 16 31 H 0.10 4.81 7.67 -2.91 -0.02 4.79 16 32 H 0.17 3.70 8.04 -2.91 -0.02 3.67 16 33 H 0.16 3.61 8.06 -2.91 -0.02 3.58 16 34 H 0.13 5.75 5.64 -2.90 -0.02 5.74 16 35 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 36 H 0.16 4.25 6.27 -2.91 -0.02 4.23 16 37 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.07 1.16 7.65 -2.39 -0.02 1.14 16 39 H 0.06 1.10 7.67 -2.39 -0.02 1.08 16 Total: -1.00 -69.85 340.37 7.36 -62.49 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 1.10 Total: 25.15 kcal Atomic # 6 Polarization: -46.72 SS G_CDS: 4.97 Total: -41.76 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.30 Total: -52.00 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -1.81 Total: -33.27 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.78 Total: -4.33 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -69.85 7.36 -62.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239615814.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.968 kcal (2) G-P(sol) polarization free energy of solvation -69.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds