Wall clock time and date at job start Tue Mar 31 2020 12:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36016 * 116.99777 * 2 1 4 4 C 1.38637 * 119.95173 * 359.73265 * 3 2 1 5 5 C 1.38037 * 120.12201 * 179.72075 * 4 3 2 6 6 C 1.50705 * 119.98868 * 180.29242 * 5 4 3 7 7 C 1.50698 * 109.47257 * 265.25527 * 6 5 4 8 8 H 1.08002 * 120.00080 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00023 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99893 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99697 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47597 * 60.00426 * 11 9 7 13 13 H 1.48505 * 109.46676 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47423 * 299.99760 * 11 9 7 15 15 C 1.39341 * 120.02377 * 0.54864 * 5 4 3 16 16 C 1.48403 * 120.04932 * 179.74485 * 15 5 4 17 17 C 1.39351 * 122.76673 * 244.68657 * 16 15 5 18 18 C 1.33079 * 114.91329 * 179.76084 * 17 16 15 19 19 S 1.75811 * 109.91800 * 0.48339 * 18 17 16 20 20 C 1.34549 * 122.76436 * 64.97956 * 16 15 5 21 21 C 1.50700 * 125.22608 * 359.97438 * 20 16 15 22 22 C 1.39335 * 119.90112 * 359.72321 * 15 5 4 23 23 C 1.38367 * 119.87606 * 0.02562 * 22 15 5 24 24 O 1.36004 * 120.01075 * 180.02562 * 23 22 15 25 25 C 1.42904 * 116.99595 * 359.97311 * 24 23 22 26 26 H 1.09002 * 109.47382 * 59.99685 * 1 2 3 27 27 H 1.09001 * 109.46938 * 299.99671 * 1 2 3 28 28 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 29 29 H 1.07998 * 119.93230 * 359.97428 * 4 3 2 30 30 H 1.09001 * 109.46908 * 25.25156 * 6 5 4 31 31 H 1.08994 * 109.47441 * 145.25233 * 6 5 4 32 32 H 0.96991 * 119.99791 * 179.97438 * 10 9 7 33 33 H 1.08006 * 122.54541 * 359.97438 * 17 16 15 34 34 H 1.08003 * 125.03760 * 180.21076 * 18 17 16 35 35 H 1.09000 * 109.47260 * 90.00040 * 21 20 16 36 36 H 1.09000 * 109.47105 * 210.00338 * 21 20 16 37 37 H 1.09003 * 109.46850 * 329.99846 * 21 20 16 38 38 H 1.08006 * 120.05963 * 179.97438 * 22 15 5 39 39 H 1.08998 * 109.47155 * 60.00593 * 25 24 23 40 40 H 1.09004 * 109.46637 * 180.02562 * 25 24 23 41 41 H 1.09002 * 109.47157 * 299.99938 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2904 2.3740 -0.0056 5 6 1.9133 3.6058 0.0002 6 6 1.0885 4.8670 0.0007 7 6 0.9171 5.3558 -1.4144 8 1 1.3607 4.8077 -2.2325 9 6 0.1930 6.5022 -1.6650 10 7 -0.3476 7.1693 -0.6688 11 14 -0.0200 7.1075 -3.4192 12 1 -0.7088 6.0656 -4.2223 13 1 -0.8327 8.3504 -3.4186 14 1 1.3127 7.3884 -4.0112 15 6 3.3046 3.6835 0.0002 16 6 3.9749 5.0075 0.0007 17 6 4.7625 5.4546 -1.0585 18 6 5.2845 6.6678 -0.8958 19 16 4.8018 7.3235 0.6625 20 6 3.8769 5.8729 1.0263 21 6 3.0942 5.6356 2.2920 22 6 4.0655 2.5163 0.0001 23 6 3.4368 1.2837 -0.0005 24 8 4.1768 0.1426 0.0000 25 6 5.5981 0.2912 0.0004 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2120 2.3152 -0.0104 30 1 0.1101 4.6611 0.4350 31 1 1.5940 5.6316 0.5905 32 1 -0.8566 7.9759 -0.8450 33 1 4.9333 4.8628 -1.9457 34 1 5.9151 7.1728 -1.6126 35 1 3.7361 5.1573 3.0319 36 1 2.7372 6.5886 2.6825 37 1 2.2432 4.9893 2.0772 38 1 5.1440 2.5735 -0.0004 39 1 5.9057 0.8401 0.8905 40 1 6.0662 -0.6932 0.0003 41 1 5.9063 0.8399 -0.8895 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240502794.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:09 Heat of formation + Delta-G solvation = -20.224257 kcal Electronic energy + Delta-G solvation = -24759.496731 eV Core-core repulsion = 21310.901135 eV Total energy + Delta-G solvation = -3448.595595 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.22041 -38.25715 -38.06402 -35.86162 -33.19221 -31.68372 -30.64410 -29.92992 -27.83684 -27.01306 -26.70118 -25.28786 -23.16806 -22.40521 -21.56480 -20.41345 -18.54763 -17.57029 -16.66544 -16.46081 -16.26800 -16.04350 -15.70300 -14.95813 -14.86238 -14.58420 -14.09346 -13.84624 -13.67907 -13.11565 -12.95074 -12.76741 -12.38059 -12.12182 -12.08294 -11.82934 -11.66238 -11.56485 -11.28592 -11.13573 -11.00698 -10.90378 -10.89074 -10.56668 -10.38939 -10.30619 -10.17743 -9.53693 -9.27621 -8.37456 -8.16401 -7.98606 -7.81786 -7.05213 -6.01161 -4.02756 1.46855 1.83727 2.03284 2.16295 2.51546 3.28451 3.32045 3.36080 3.39525 3.60935 3.63659 4.25043 4.48990 5.13834 5.26318 5.30496 5.34046 5.34986 5.38495 5.40180 5.45276 5.58546 5.64604 5.69006 5.76971 5.82909 5.91864 5.98279 5.99830 6.13167 6.19861 6.51130 6.52668 6.67305 6.83526 6.90771 7.07963 7.11556 7.25684 7.40277 7.55797 7.81861 7.93752 7.99560 8.35342 8.99651 9.59330 11.08433 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.009930 B = 0.006141 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.189240 B = 4558.443421 C = 6267.872837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.098 3.902 4 C -0.176 4.176 5 C -0.014 4.014 6 C 0.040 3.960 7 C -0.501 4.501 8 H 0.053 0.947 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.888 3.112 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C -0.033 4.033 16 C -0.043 4.043 17 C -0.103 4.103 18 C -0.225 4.225 19 S 0.075 5.925 20 C -0.148 4.148 21 C -0.087 4.087 22 C -0.156 4.156 23 C 0.068 3.932 24 O -0.313 6.313 25 C 0.030 3.970 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.134 0.866 30 H 0.023 0.977 31 H 0.052 0.948 32 H 0.261 0.739 33 H 0.133 0.867 34 H 0.157 0.843 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.050 0.950 40 H 0.092 0.908 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.458 -7.801 3.970 12.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.053 3.947 4 C -0.195 4.195 5 C -0.015 4.015 6 C 0.004 3.996 7 C -0.539 4.539 8 H 0.071 0.929 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.716 3.284 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.036 4.036 16 C -0.054 4.054 17 C -0.133 4.133 18 C -0.360 4.360 19 S 0.340 5.660 20 C -0.265 4.265 21 C -0.146 4.146 22 C -0.175 4.175 23 C 0.024 3.976 24 O -0.228 6.228 25 C -0.066 4.066 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.151 0.849 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.151 0.849 34 H 0.174 0.826 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.145 0.855 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.676 -6.631 4.761 12.660 hybrid contribution -0.522 -0.445 -2.052 2.164 sum 9.154 -7.076 2.709 11.883 Atomic orbital electron populations 1.23000 0.79067 1.03102 1.01613 1.86088 1.20664 1.26554 1.89471 1.18293 0.88912 0.84912 1.02564 1.20970 0.99900 0.90718 1.07869 1.20493 0.92714 0.96402 0.91885 1.18600 0.93806 0.88814 0.98384 1.20894 1.32485 1.08855 0.91656 0.92879 1.24905 0.95682 0.96542 0.96760 1.69923 1.35031 1.17616 1.30627 0.86713 0.78219 0.78141 0.85348 1.20299 1.21268 1.20230 1.17926 0.92153 0.90149 1.03323 1.17351 0.99647 0.94873 0.93521 1.19993 0.98098 0.96010 0.99232 1.25151 1.09678 0.99905 1.01236 1.83838 1.47772 1.20409 1.14024 1.24326 1.04789 0.96224 1.01147 1.20526 0.99249 1.02772 0.92003 1.20926 0.99440 0.90389 1.06739 1.17875 0.87954 0.85479 1.06317 1.86110 1.17954 1.28598 1.90089 1.22937 0.79658 1.02977 1.01000 0.92600 0.92803 0.88878 0.84874 0.95841 0.93034 0.92938 0.84910 0.82555 0.91737 0.91447 0.89105 0.85480 0.93129 0.88926 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.31 -5.41 10.27 -34.46 -0.35 -5.77 16 3 C 0.10 1.83 6.70 -39.07 -0.26 1.57 16 4 C -0.18 -3.44 8.65 -39.51 -0.34 -3.78 16 5 C -0.01 -0.30 4.32 -104.28 -0.45 -0.75 16 6 C 0.04 1.00 3.92 -29.03 -0.11 0.88 16 7 C -0.50 -13.71 9.09 -34.44 -0.31 -14.02 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 11 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C -0.03 -0.64 5.00 -104.89 -0.52 -1.17 16 16 C -0.04 -0.82 4.53 -106.60 -0.48 -1.30 16 17 C -0.10 -1.84 10.00 -40.96 -0.41 -2.25 16 18 C -0.22 -3.68 11.19 28.94 0.32 -3.35 16 19 S 0.08 1.25 23.31 -107.50 -2.51 -1.25 16 20 C -0.15 -2.73 5.47 -35.61 -0.19 -2.93 16 21 C -0.09 -1.47 9.16 36.01 0.33 -1.14 16 22 C -0.16 -2.70 8.75 -39.13 -0.34 -3.04 16 23 C 0.07 1.22 6.69 -39.17 -0.26 0.96 16 24 O -0.31 -5.14 10.28 -34.42 -0.35 -5.49 16 25 C 0.03 0.34 9.81 101.05 0.99 1.33 16 26 H 0.06 0.73 7.64 -51.93 -0.40 0.33 16 27 H 0.05 0.66 7.67 -51.93 -0.40 0.26 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.13 2.46 6.28 -52.49 -0.33 2.13 16 30 H 0.02 0.61 8.05 -51.93 -0.42 0.19 16 31 H 0.05 1.30 4.16 -51.93 -0.22 1.08 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 34 H 0.16 2.10 8.06 -52.48 -0.42 1.68 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.69 5.04 -51.93 -0.26 1.43 16 38 H 0.13 1.88 6.29 -52.48 -0.33 1.55 16 39 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -31.43 351.76 -8.58 -40.00 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.22 Total: 1.66 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: -1.16 Total: -26.00 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.74 Total: -25.06 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -0.71 Total: -11.26 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.51 Total: -1.25 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.43 -8.58 -40.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240502794.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.780 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds