Wall clock time and date at job start Tue Mar 31 2020 12:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36016 * 116.99777 * 2 1 4 4 C 1.38637 * 119.95173 * 359.73265 * 3 2 1 5 5 C 1.38037 * 120.12201 * 179.72075 * 4 3 2 6 6 C 1.50705 * 119.98868 * 180.29242 * 5 4 3 7 7 C 1.50698 * 109.47257 * 265.25527 * 6 5 4 8 8 H 1.08002 * 120.00080 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00023 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99893 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99697 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47597 * 60.00426 * 11 9 7 13 13 H 1.48505 * 109.46676 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47423 * 299.99760 * 11 9 7 15 15 C 1.39341 * 120.02377 * 0.54864 * 5 4 3 16 16 C 1.48403 * 120.04932 * 179.74485 * 15 5 4 17 17 C 1.39351 * 122.76673 * 244.68657 * 16 15 5 18 18 C 1.33079 * 114.91329 * 179.76084 * 17 16 15 19 19 S 1.75811 * 109.91800 * 0.48339 * 18 17 16 20 20 C 1.34549 * 122.76436 * 64.97956 * 16 15 5 21 21 C 1.50700 * 125.22608 * 359.97438 * 20 16 15 22 22 C 1.39335 * 119.90112 * 359.72321 * 15 5 4 23 23 C 1.38367 * 119.87606 * 0.02562 * 22 15 5 24 24 O 1.36004 * 120.01075 * 180.02562 * 23 22 15 25 25 C 1.42904 * 116.99595 * 359.97311 * 24 23 22 26 26 H 1.09002 * 109.47382 * 59.99685 * 1 2 3 27 27 H 1.09001 * 109.46938 * 299.99671 * 1 2 3 28 28 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 29 29 H 1.07998 * 119.93230 * 359.97428 * 4 3 2 30 30 H 1.09001 * 109.46908 * 25.25156 * 6 5 4 31 31 H 1.08994 * 109.47441 * 145.25233 * 6 5 4 32 32 H 0.96991 * 119.99791 * 179.97438 * 10 9 7 33 33 H 1.08006 * 122.54541 * 359.97438 * 17 16 15 34 34 H 1.08003 * 125.03760 * 180.21076 * 18 17 16 35 35 H 1.09000 * 109.47260 * 90.00040 * 21 20 16 36 36 H 1.09000 * 109.47105 * 210.00338 * 21 20 16 37 37 H 1.09003 * 109.46850 * 329.99846 * 21 20 16 38 38 H 1.08006 * 120.05963 * 179.97438 * 22 15 5 39 39 H 1.08998 * 109.47155 * 60.00593 * 25 24 23 40 40 H 1.09004 * 109.46637 * 180.02562 * 25 24 23 41 41 H 1.09002 * 109.47157 * 299.99938 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2904 2.3740 -0.0056 5 6 1.9133 3.6058 0.0002 6 6 1.0885 4.8670 0.0007 7 6 0.9171 5.3558 -1.4144 8 1 1.3607 4.8077 -2.2325 9 6 0.1930 6.5022 -1.6650 10 7 -0.3476 7.1693 -0.6688 11 14 -0.0200 7.1075 -3.4192 12 1 -0.7088 6.0656 -4.2223 13 1 -0.8327 8.3504 -3.4186 14 1 1.3127 7.3884 -4.0112 15 6 3.3046 3.6835 0.0002 16 6 3.9749 5.0075 0.0007 17 6 4.7625 5.4546 -1.0585 18 6 5.2845 6.6678 -0.8958 19 16 4.8018 7.3235 0.6625 20 6 3.8769 5.8729 1.0263 21 6 3.0942 5.6356 2.2920 22 6 4.0655 2.5163 0.0001 23 6 3.4368 1.2837 -0.0005 24 8 4.1768 0.1426 0.0000 25 6 5.5981 0.2912 0.0004 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2120 2.3152 -0.0104 30 1 0.1101 4.6611 0.4350 31 1 1.5940 5.6316 0.5905 32 1 -0.8566 7.9759 -0.8450 33 1 4.9333 4.8628 -1.9457 34 1 5.9151 7.1728 -1.6126 35 1 3.7361 5.1573 3.0319 36 1 2.7372 6.5886 2.6825 37 1 2.2432 4.9893 2.0772 38 1 5.1440 2.5735 -0.0004 39 1 5.9057 0.8401 0.8905 40 1 6.0662 -0.6932 0.0003 41 1 5.9063 0.8399 -0.8895 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240502794.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:08 Heat of formation + Delta-G solvation = -36.556900 kcal Electronic energy + Delta-G solvation = -24760.204967 eV Core-core repulsion = 21310.901135 eV Total energy + Delta-G solvation = -3449.303832 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.59248 -39.61733 -39.30765 -37.26767 -35.14700 -33.15713 -32.23739 -31.28633 -29.32646 -28.19193 -27.96595 -26.80485 -24.89780 -23.83570 -22.92392 -21.91215 -19.89291 -18.89480 -18.46455 -17.97776 -17.65218 -17.47509 -16.93212 -16.54290 -16.13987 -16.07739 -15.35925 -15.22604 -15.07034 -14.61477 -14.42597 -14.28154 -13.81825 -13.55067 -13.41916 -13.19846 -13.15627 -12.99469 -12.83738 -12.69691 -12.48977 -12.29302 -12.24098 -12.06455 -12.01299 -11.86081 -11.55525 -11.37654 -11.13341 -10.50010 -9.60991 -9.32600 -9.17930 -8.51221 -8.10552 -6.21310 0.09041 0.42134 0.56439 0.83908 1.17898 1.38067 1.38906 1.46579 1.90412 2.39579 2.41663 2.44297 2.82741 3.18860 3.86134 3.97285 4.08631 4.15006 4.29837 4.39096 4.40873 4.42658 4.46221 4.47536 4.56307 4.60131 4.71794 4.73640 4.75702 4.77473 4.82497 5.10919 5.16176 5.26595 5.30040 5.40917 5.49388 5.54156 5.71754 5.77821 5.82974 6.05377 6.17040 6.28176 6.68251 6.87708 7.43811 8.95507 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.009930 B = 0.006141 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.189240 B = 4558.443421 C = 6267.872837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.324 6.324 3 C 0.091 3.909 4 C -0.181 4.181 5 C -0.042 4.042 6 C 0.053 3.947 7 C -0.509 4.509 8 H 0.043 0.957 9 C 0.015 3.985 10 N -0.923 5.923 11 Si 0.944 3.056 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.272 1.272 15 C -0.036 4.036 16 C -0.060 4.060 17 C -0.125 4.125 18 C -0.217 4.217 19 S 0.095 5.905 20 C -0.172 4.172 21 C -0.085 4.085 22 C -0.149 4.149 23 C 0.073 3.927 24 O -0.327 6.327 25 C 0.019 3.981 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.127 0.873 29 H 0.133 0.867 30 H -0.005 1.005 31 H 0.044 0.956 32 H 0.262 0.738 33 H 0.142 0.858 34 H 0.188 0.812 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.155 0.845 39 H 0.061 0.939 40 H 0.121 0.879 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.231 -8.491 3.224 14.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.238 6.238 3 C 0.045 3.955 4 C -0.200 4.200 5 C -0.042 4.042 6 C 0.017 3.983 7 C -0.547 4.547 8 H 0.061 0.939 9 C -0.183 4.183 10 N -0.563 5.563 11 Si 0.770 3.230 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.197 1.197 15 C -0.039 4.039 16 C -0.072 4.072 17 C -0.155 4.155 18 C -0.352 4.352 19 S 0.359 5.641 20 C -0.289 4.289 21 C -0.143 4.143 22 C -0.167 4.167 23 C 0.028 3.972 24 O -0.242 6.242 25 C -0.076 4.076 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.013 0.987 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.160 0.840 34 H 0.205 0.795 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.172 0.828 39 H 0.080 0.920 40 H 0.139 0.861 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.456 -7.339 4.016 14.185 hybrid contribution -1.017 -0.329 -1.781 2.077 sum 10.439 -7.668 2.235 13.144 Atomic orbital electron populations 1.23283 0.77106 1.05353 1.01683 1.86074 1.22716 1.25779 1.89277 1.18377 0.89585 0.84989 1.02510 1.20944 1.00119 0.90787 1.08151 1.20217 0.93478 0.95421 0.95106 1.18315 0.92844 0.90449 0.96712 1.21144 1.32040 1.08798 0.92719 0.93874 1.25624 0.95531 0.96798 1.00341 1.70032 1.35836 1.18038 1.32438 0.85816 0.78325 0.77799 0.81076 1.19715 1.20702 1.19706 1.18027 0.91512 0.91335 1.02991 1.17557 1.00269 0.95051 0.94304 1.20153 0.98876 0.97011 0.99487 1.25570 1.08943 0.99334 1.01381 1.83714 1.46943 1.19233 1.14165 1.24604 1.05473 0.97176 1.01638 1.20493 0.98893 1.02566 0.92375 1.21109 1.00595 0.89360 1.05673 1.18034 0.88087 0.86232 1.04834 1.86102 1.20439 1.27950 1.89685 1.23314 0.77017 1.05276 1.01975 0.92935 0.92359 0.85536 0.84900 0.98691 0.93817 0.92919 0.83993 0.79509 0.89245 0.91364 0.91319 0.82794 0.91999 0.86065 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.81 113.37 1.11 1.62 16 2 O -0.32 -10.94 10.27 -79.70 -0.82 -11.76 16 3 C 0.09 3.37 6.70 22.60 0.15 3.52 16 4 C -0.18 -7.27 8.65 22.32 0.19 -7.08 16 5 C -0.04 -1.82 4.32 -19.64 -0.08 -1.91 16 6 C 0.05 2.75 3.92 29.10 0.11 2.86 16 7 C -0.51 -28.52 9.09 25.60 0.23 -28.28 16 8 H 0.04 2.45 7.74 -2.91 -0.02 2.42 16 9 C 0.02 0.87 5.46 84.66 0.46 1.33 16 10 N -0.92 -54.41 13.29 21.45 0.28 -54.12 16 11 Si 0.94 44.46 29.54 68.60 2.03 46.49 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 14 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 15 C -0.04 -1.41 5.00 -20.04 -0.10 -1.51 16 16 C -0.06 -2.29 4.53 -21.15 -0.10 -2.39 16 17 C -0.13 -4.33 10.00 21.38 0.21 -4.11 16 18 C -0.22 -6.68 11.19 66.66 0.75 -5.93 16 19 S 0.10 3.04 23.31 -56.49 -1.32 1.73 16 20 C -0.17 -6.32 5.47 24.84 0.14 -6.19 16 21 C -0.08 -2.92 9.16 71.24 0.65 -2.26 16 22 C -0.15 -4.97 8.75 22.56 0.20 -4.77 16 23 C 0.07 2.54 6.69 22.53 0.15 2.69 16 24 O -0.33 -10.07 10.28 -79.57 -0.82 -10.88 16 25 C 0.02 0.37 9.81 113.37 1.11 1.48 16 26 H 0.05 1.36 7.64 -2.39 -0.02 1.34 16 27 H 0.06 1.41 7.67 -2.39 -0.02 1.40 16 28 H 0.13 2.30 8.14 -2.38 -0.02 2.29 16 29 H 0.13 5.14 6.28 -2.91 -0.02 5.12 16 30 H -0.01 -0.29 8.05 -2.39 -0.02 -0.31 16 31 H 0.04 2.30 4.16 -2.39 -0.01 2.29 16 32 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 33 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 34 H 0.19 4.43 8.06 -2.91 -0.02 4.40 16 35 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.07 2.67 5.04 -2.39 -0.01 2.65 16 38 H 0.15 4.20 6.29 -2.91 -0.02 4.18 16 39 H 0.06 1.11 7.66 -2.39 -0.02 1.09 16 40 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.06 1.10 7.66 -2.39 -0.02 1.08 16 Total: -1.00 -68.06 351.76 5.60 -62.46 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 1.05 Total: 17.03 kcal Atomic # 6 Polarization: -56.13 SS G_CDS: 5.19 Total: -50.93 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.28 Total: -54.12 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -1.64 Total: -22.65 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -1.32 Total: 1.73 kcal Total: -68.06 5.60 -62.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240502794.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.902 kcal (2) G-P(sol) polarization free energy of solvation -68.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds