Wall clock time and date at job start Tue Mar 31 2020 11:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30842 * 1 3 3 Si 1.86803 * 119.99490 * 2 1 4 4 H 1.48497 * 109.47113 * 269.99621 * 3 2 1 5 5 H 1.48497 * 109.47158 * 29.99981 * 3 2 1 6 6 H 1.48505 * 109.46579 * 149.99977 * 3 2 1 7 7 C 1.39914 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99882 * 162.91099 * 7 2 1 9 9 C 1.41219 * 120.00398 * 342.91297 * 7 2 1 10 10 C 1.39970 * 119.48522 * 333.28837 * 9 7 2 11 11 C 1.39892 * 120.11202 * 180.02562 * 10 9 7 12 12 C 1.40858 * 121.13701 * 179.97438 * 11 10 9 13 13 C 1.36189 * 119.61082 * 180.02562 * 12 11 10 14 14 C 1.39248 * 120.93496 * 359.97438 * 13 12 11 15 15 C 1.36545 * 120.98444 * 0.02562 * 14 13 12 16 16 C 1.39805 * 119.73600 * 359.97438 * 15 14 13 17 17 C 1.46326 * 121.16987 * 179.97438 * 16 15 14 18 18 C 1.48134 * 120.34301 * 0.03020 * 17 16 15 19 19 C 1.39478 * 120.06661 * 309.97465 * 18 17 16 20 20 C 1.37945 * 120.01073 * 179.77199 * 19 18 17 21 21 C 1.38715 * 120.19779 * 0.49453 * 20 19 18 22 22 C 1.39413 * 120.04171 * 359.50843 * 21 20 19 23 23 C 1.38291 * 119.96361 * 0.24231 * 22 21 20 24 24 O 1.36533 * 108.62569 * 180.25048 * 22 21 20 25 25 C 1.43980 * 105.47067 * 342.68551 * 24 22 21 26 26 O 1.36506 * 131.36691 * 179.81925 * 21 20 19 27 27 C 1.36700 * 119.31403 * 180.30096 * 17 16 15 28 28 H 0.96999 * 120.00293 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.94894 * 0.02562 * 10 9 7 30 30 H 1.07999 * 120.19699 * 359.97438 * 12 11 10 31 31 H 1.07997 * 119.53396 * 179.97438 * 13 12 11 32 32 H 1.08001 * 119.50739 * 179.97438 * 14 13 12 33 33 H 1.07995 * 120.13315 * 180.02562 * 15 14 13 34 34 H 1.08000 * 119.99411 * 0.02562 * 19 18 17 35 35 H 1.08001 * 119.89961 * 180.30638 * 20 19 18 36 36 H 1.07997 * 120.04170 * 179.97438 * 23 22 21 37 37 H 1.08995 * 110.56961 * 268.61193 * 25 24 22 38 38 H 1.08999 * 110.56710 * 145.75139 * 25 24 22 39 39 H 1.08004 * 119.70219 * 179.70729 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5399 1.4403 0.7001 7 6 2.0080 -1.2117 0.0005 8 1 3.0522 -1.2324 -0.2743 9 6 1.3487 -2.4076 0.3604 10 6 0.2447 -2.3541 1.2191 11 6 -0.4178 -3.5307 1.5846 12 6 -1.5307 -3.5020 2.4476 13 6 -2.1520 -4.6665 2.7835 14 6 -1.7032 -5.8868 2.2852 15 6 -0.6276 -5.9509 1.4465 16 6 0.0362 -4.7767 1.0791 17 6 1.1923 -4.8090 0.1828 18 6 1.6848 -6.0975 -0.3572 19 6 1.9206 -7.1707 0.5019 20 6 2.3747 -8.3716 -0.0027 21 6 2.6082 -8.5133 -1.3627 22 6 2.3744 -7.4440 -2.2261 23 6 1.9142 -6.2398 -1.7255 24 8 2.6730 -7.8378 -3.4989 25 6 3.4785 -9.0225 -3.3553 26 8 3.0529 -9.5754 -2.0958 27 6 1.8167 -3.6384 -0.1467 28 1 -0.4850 0.8400 -0.0004 29 1 -0.0964 -1.4029 1.6002 30 1 -1.8886 -2.5622 2.8414 31 1 -3.0048 -4.6430 3.4456 32 1 -2.2130 -6.7963 2.5670 33 1 -0.2915 -6.9048 1.0678 34 1 1.7436 -7.0629 1.5618 35 1 2.5519 -9.2030 0.6635 36 1 1.7331 -5.4105 -2.3931 37 1 4.5369 -8.7643 -3.3220 38 1 3.2793 -9.7218 -4.1673 39 1 2.6735 -3.6554 -0.8040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240902315.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:32 Heat of formation + Delta-G solvation = -2.842387 kcal Electronic energy + Delta-G solvation = -24982.877098 eV Core-core repulsion = 21399.591286 eV Total energy + Delta-G solvation = -3583.285812 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.03850 -39.18109 -37.52204 -36.21526 -35.71866 -33.54377 -31.79141 -30.54120 -29.73413 -29.30033 -27.66524 -25.80830 -25.25948 -23.10140 -22.78013 -21.89870 -21.22071 -20.18006 -18.13633 -17.76861 -17.20436 -17.09639 -16.11955 -16.04373 -15.69591 -15.00024 -14.59674 -14.35713 -14.13846 -13.73626 -13.64952 -13.36063 -12.97335 -12.91078 -12.63738 -12.54806 -12.33017 -12.17899 -12.07176 -11.56305 -11.25279 -11.06997 -10.92493 -10.88026 -10.70152 -10.52605 -10.01644 -9.70951 -9.63069 -9.24322 -8.81463 -8.57281 -7.90602 -7.54422 -6.91784 -6.71002 -4.44934 1.12001 1.38445 1.77137 2.24756 2.79438 2.92455 3.00067 3.04801 3.19132 3.48302 3.78762 3.83528 4.00023 4.60639 4.62818 4.74691 4.81274 5.16016 5.24785 5.27612 5.41957 5.55687 5.64927 5.69956 5.73257 5.86502 6.14538 6.15547 6.25812 6.32811 6.36711 6.49200 6.56998 6.59873 6.69359 6.87917 6.96584 6.98260 7.19774 7.25507 7.34466 7.39961 7.47719 7.61895 7.84563 8.00925 8.09387 8.45248 8.67409 8.73391 10.02749 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.004171 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.620971 B = 6712.068615 C = 8666.522106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.449 4.449 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.199 4.199 11 C 0.001 3.999 12 C -0.136 4.136 13 C -0.119 4.119 14 C -0.187 4.187 15 C -0.086 4.086 16 C -0.115 4.115 17 C -0.057 4.057 18 C 0.000 4.000 19 C -0.103 4.103 20 C -0.098 4.098 21 C 0.013 3.987 22 C 0.031 3.969 23 C -0.092 4.092 24 O -0.311 6.311 25 C 0.214 3.786 26 O -0.314 6.314 27 C -0.119 4.119 28 H 0.283 0.717 29 H 0.122 0.878 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.080 0.920 38 H 0.127 0.873 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.701 -10.674 -1.326 11.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.146 4.146 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.477 4.477 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.220 4.220 11 C 0.000 4.000 12 C -0.154 4.154 13 C -0.137 4.137 14 C -0.206 4.206 15 C -0.104 4.104 16 C -0.116 4.116 17 C -0.057 4.057 18 C 0.000 4.000 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.030 4.030 22 C -0.013 4.013 23 C -0.111 4.111 24 O -0.227 6.227 25 C 0.102 3.898 26 O -0.230 6.230 27 C -0.137 4.137 28 H 0.095 0.905 29 H 0.140 0.860 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.159 0.841 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.098 0.902 38 H 0.144 0.856 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.468 -10.646 -1.532 11.301 hybrid contribution 0.375 0.679 -0.357 0.854 sum 3.843 -9.967 -1.889 10.847 Atomic orbital electron populations 1.69828 1.07608 1.29584 1.33246 1.25913 0.94779 1.01433 0.92453 0.86304 0.80691 0.80457 0.79348 1.19392 1.19932 1.18315 1.19639 0.97816 0.91180 1.39070 0.90133 1.17379 0.92146 0.91345 0.89507 1.21198 1.01461 0.95877 1.03433 1.17914 0.94182 0.92928 0.94930 1.20916 0.96921 0.97298 1.00275 1.20505 0.99632 0.93019 1.00581 1.20362 0.99977 0.96816 1.03440 1.20793 0.95491 0.96909 0.97161 1.18421 0.97808 0.92870 1.02460 1.19013 0.96723 0.90410 0.99594 1.18616 0.96343 0.93975 0.91087 1.21142 0.99327 0.91144 1.00503 1.19956 1.02825 0.98773 0.90150 1.19809 1.04216 0.85521 0.93500 1.19649 1.03879 0.95402 0.82377 1.20235 1.01799 0.94138 0.94916 1.87359 1.68382 1.43015 1.23985 1.25532 0.94971 0.83214 0.86124 1.87308 1.79625 1.29477 1.26608 1.21198 1.00252 0.91997 1.00292 0.90544 0.86035 0.87274 0.88107 0.88164 0.87304 0.84091 0.84962 0.84476 0.90247 0.85588 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.13 11.00 55.55 0.61 -18.52 16 2 C 0.07 1.74 5.10 -17.35 -0.09 1.65 16 3 Si 0.91 17.61 29.59 -169.99 -5.03 12.58 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 7 C -0.45 -11.02 8.99 -37.82 -0.34 -11.36 16 8 H 0.08 1.88 7.90 -52.49 -0.41 1.46 16 9 C 0.10 2.44 5.54 -107.03 -0.59 1.85 16 10 C -0.20 -4.95 8.38 -38.31 -0.32 -5.28 16 11 C 0.00 0.02 5.74 -106.88 -0.61 -0.60 16 12 C -0.14 -2.81 9.78 -39.33 -0.38 -3.19 16 13 C -0.12 -2.19 9.95 -39.94 -0.40 -2.59 16 14 C -0.19 -3.37 9.96 -39.82 -0.40 -3.77 16 15 C -0.09 -1.63 8.68 -39.61 -0.34 -1.97 16 16 C -0.11 -2.48 5.88 -104.65 -0.62 -3.09 16 17 C -0.06 -1.18 5.59 -103.14 -0.58 -1.76 16 18 C 0.00 0.00 5.09 -104.91 -0.53 -0.53 16 19 C -0.10 -1.57 7.67 -39.23 -0.30 -1.87 16 20 C -0.10 -1.36 10.04 -39.51 -0.40 -1.76 16 21 C 0.01 0.20 7.15 -38.97 -0.28 -0.08 16 22 C 0.03 0.49 7.14 -39.12 -0.28 0.21 16 23 C -0.09 -1.56 9.50 -39.10 -0.37 -1.94 16 24 O -0.31 -4.54 11.41 -45.80 -0.52 -5.07 16 25 C 0.21 2.29 8.89 101.05 0.90 3.19 16 26 O -0.31 -4.26 11.40 -45.71 -0.52 -4.79 16 27 C -0.12 -2.63 9.10 -39.05 -0.36 -2.99 16 28 H 0.28 6.34 8.30 -40.82 -0.34 6.01 16 29 H 0.12 3.14 6.19 -52.49 -0.32 2.82 16 30 H 0.11 2.11 8.06 -52.49 -0.42 1.69 16 31 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.11 1.85 5.70 -52.49 -0.30 1.55 16 34 H 0.14 2.02 7.30 -52.49 -0.38 1.64 16 35 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.14 2.31 8.04 -52.49 -0.42 1.89 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 2.13 8.01 -52.48 -0.42 1.71 16 LS Contribution 332.84 15.07 5.02 5.02 Total: -1.00 -27.35 332.84 -10.67 -38.02 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -3.94 Total: 8.64 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: -6.29 Total: -35.88 kcal Atomic # 7 Polarization: -19.13 SS G_CDS: 0.61 Total: -18.52 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -1.04 Total: -9.85 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.35 -10.67 -38.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240902315.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.174 kcal (2) G-P(sol) polarization free energy of solvation -27.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds