Wall clock time and date at job start Tue Mar 31 2020 11:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30842 * 1 3 3 Si 1.86803 * 119.99490 * 2 1 4 4 H 1.48497 * 109.47113 * 269.99621 * 3 2 1 5 5 H 1.48497 * 109.47158 * 29.99981 * 3 2 1 6 6 H 1.48505 * 109.46579 * 149.99977 * 3 2 1 7 7 C 1.39914 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99882 * 162.91099 * 7 2 1 9 9 C 1.41219 * 120.00398 * 342.91297 * 7 2 1 10 10 C 1.39970 * 119.48522 * 333.28837 * 9 7 2 11 11 C 1.39892 * 120.11202 * 180.02562 * 10 9 7 12 12 C 1.40858 * 121.13701 * 179.97438 * 11 10 9 13 13 C 1.36189 * 119.61082 * 180.02562 * 12 11 10 14 14 C 1.39248 * 120.93496 * 359.97438 * 13 12 11 15 15 C 1.36545 * 120.98444 * 0.02562 * 14 13 12 16 16 C 1.39805 * 119.73600 * 359.97438 * 15 14 13 17 17 C 1.46326 * 121.16987 * 179.97438 * 16 15 14 18 18 C 1.48134 * 120.34301 * 0.03020 * 17 16 15 19 19 C 1.39478 * 120.06661 * 309.97465 * 18 17 16 20 20 C 1.37945 * 120.01073 * 179.77199 * 19 18 17 21 21 C 1.38715 * 120.19779 * 0.49453 * 20 19 18 22 22 C 1.39413 * 120.04171 * 359.50843 * 21 20 19 23 23 C 1.38291 * 119.96361 * 0.24231 * 22 21 20 24 24 O 1.36533 * 108.62569 * 180.25048 * 22 21 20 25 25 C 1.43980 * 105.47067 * 342.68551 * 24 22 21 26 26 O 1.36506 * 131.36691 * 179.81925 * 21 20 19 27 27 C 1.36700 * 119.31403 * 180.30096 * 17 16 15 28 28 H 0.96999 * 120.00293 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.94894 * 0.02562 * 10 9 7 30 30 H 1.07999 * 120.19699 * 359.97438 * 12 11 10 31 31 H 1.07997 * 119.53396 * 179.97438 * 13 12 11 32 32 H 1.08001 * 119.50739 * 179.97438 * 14 13 12 33 33 H 1.07995 * 120.13315 * 180.02562 * 15 14 13 34 34 H 1.08000 * 119.99411 * 0.02562 * 19 18 17 35 35 H 1.08001 * 119.89961 * 180.30638 * 20 19 18 36 36 H 1.07997 * 120.04170 * 179.97438 * 23 22 21 37 37 H 1.08995 * 110.56961 * 268.61193 * 25 24 22 38 38 H 1.08999 * 110.56710 * 145.75139 * 25 24 22 39 39 H 1.08004 * 119.70219 * 179.70729 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5399 1.4403 0.7001 7 6 2.0080 -1.2117 0.0005 8 1 3.0522 -1.2324 -0.2743 9 6 1.3487 -2.4076 0.3604 10 6 0.2447 -2.3541 1.2191 11 6 -0.4178 -3.5307 1.5846 12 6 -1.5307 -3.5020 2.4476 13 6 -2.1520 -4.6665 2.7835 14 6 -1.7032 -5.8868 2.2852 15 6 -0.6276 -5.9509 1.4465 16 6 0.0362 -4.7767 1.0791 17 6 1.1923 -4.8090 0.1828 18 6 1.6848 -6.0975 -0.3572 19 6 1.9206 -7.1707 0.5019 20 6 2.3747 -8.3716 -0.0027 21 6 2.6082 -8.5133 -1.3627 22 6 2.3744 -7.4440 -2.2261 23 6 1.9142 -6.2398 -1.7255 24 8 2.6730 -7.8378 -3.4989 25 6 3.4785 -9.0225 -3.3553 26 8 3.0529 -9.5754 -2.0958 27 6 1.8167 -3.6384 -0.1467 28 1 -0.4850 0.8400 -0.0004 29 1 -0.0964 -1.4029 1.6002 30 1 -1.8886 -2.5622 2.8414 31 1 -3.0048 -4.6430 3.4456 32 1 -2.2130 -6.7963 2.5670 33 1 -0.2915 -6.9048 1.0678 34 1 1.7436 -7.0629 1.5618 35 1 2.5519 -9.2030 0.6635 36 1 1.7331 -5.4105 -2.3931 37 1 4.5369 -8.7643 -3.3220 38 1 3.2793 -9.7218 -4.1673 39 1 2.6735 -3.6554 -0.8040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240902315.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:31 Heat of formation + Delta-G solvation = -14.646438 kcal Electronic energy + Delta-G solvation = -24983.388960 eV Core-core repulsion = 21399.591286 eV Total energy + Delta-G solvation = -3583.797674 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.104 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.11784 -40.73592 -38.81891 -37.38994 -37.27257 -35.18757 -33.35270 -31.79332 -31.36769 -30.67404 -29.16379 -27.14693 -26.62242 -24.49715 -24.01046 -23.40194 -22.81837 -21.71201 -19.62964 -18.89967 -18.44516 -18.28066 -17.77428 -17.32367 -17.09360 -16.61680 -16.08017 -15.53307 -15.45360 -14.97190 -14.93181 -14.83266 -14.41148 -14.18532 -14.01420 -13.97584 -13.85038 -13.58131 -13.49137 -13.16263 -12.83124 -12.60653 -12.51288 -12.20079 -12.08253 -11.93995 -11.60969 -11.31054 -11.28056 -10.92141 -10.38108 -9.86564 -9.24519 -9.11987 -8.66927 -8.33085 -6.30323 -0.25511 0.17544 0.30647 0.60516 1.35573 1.39365 1.49779 1.52715 1.81695 2.17858 2.31137 2.50028 2.59258 3.04599 3.44880 3.71000 3.78175 3.83710 4.06974 4.09562 4.14771 4.23049 4.28389 4.33591 4.36407 4.53966 4.65443 4.77576 4.88898 4.92638 4.97808 5.03413 5.14948 5.18964 5.23615 5.26371 5.37603 5.51698 5.59480 5.72452 5.73926 5.88228 5.97963 6.08692 6.10660 6.25316 6.45936 6.65946 6.87157 6.95433 8.30284 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.004171 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.620971 B = 6712.068615 C = 8666.522106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.034 3.966 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.487 4.487 8 H 0.080 0.920 9 C 0.076 3.924 10 C -0.229 4.229 11 C -0.022 4.022 12 C -0.161 4.161 13 C -0.107 4.107 14 C -0.176 4.176 15 C -0.088 4.088 16 C -0.132 4.132 17 C -0.042 4.042 18 C -0.022 4.022 19 C -0.095 4.095 20 C -0.087 4.087 21 C 0.019 3.981 22 C 0.022 3.978 23 C -0.104 4.104 24 O -0.328 6.328 25 C 0.204 3.796 26 O -0.317 6.317 27 C -0.145 4.145 28 H 0.288 0.712 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.134 0.866 34 H 0.153 0.847 35 H 0.168 0.832 36 H 0.124 0.876 37 H 0.103 0.897 38 H 0.164 0.836 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.710 -14.011 -0.819 14.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.181 4.181 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.516 4.516 8 H 0.099 0.901 9 C 0.073 3.927 10 C -0.249 4.249 11 C -0.022 4.022 12 C -0.179 4.179 13 C -0.125 4.125 14 C -0.194 4.194 15 C -0.105 4.105 16 C -0.133 4.133 17 C -0.042 4.042 18 C -0.022 4.022 19 C -0.113 4.113 20 C -0.106 4.106 21 C -0.025 4.025 22 C -0.022 4.022 23 C -0.123 4.123 24 O -0.245 6.245 25 C 0.094 3.906 26 O -0.234 6.234 27 C -0.164 4.164 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.151 0.849 34 H 0.171 0.829 35 H 0.185 0.815 36 H 0.142 0.858 37 H 0.120 0.880 38 H 0.181 0.819 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.480 -14.008 -1.032 14.470 hybrid contribution 0.297 1.379 -0.524 1.505 sum 3.777 -12.629 -1.557 13.273 Atomic orbital electron populations 1.69906 1.09084 1.30575 1.34647 1.26737 0.95435 1.04497 0.91454 0.85239 0.79195 0.76016 0.79533 1.18642 1.19224 1.18090 1.19885 0.98115 0.92338 1.41231 0.90142 1.17695 0.92570 0.92570 0.89819 1.21091 1.02827 0.95859 1.05142 1.18203 0.95099 0.93072 0.95841 1.21067 0.97110 0.98766 1.00955 1.20942 0.99682 0.92157 0.99674 1.20887 0.98917 0.98144 1.01457 1.21067 0.95562 0.96760 0.97162 1.18772 0.98366 0.93410 1.02752 1.19284 0.95563 0.91400 0.97936 1.18454 0.98645 0.93390 0.91727 1.21223 0.98680 0.90742 1.00638 1.20245 1.01107 0.99001 0.90217 1.20030 1.03184 0.85429 0.93896 1.19661 1.03879 0.95310 0.83357 1.20117 1.02763 0.94643 0.94767 1.87340 1.69125 1.44487 1.23512 1.26133 0.95692 0.82705 0.86115 1.87302 1.79496 1.29159 1.27418 1.21240 1.01340 0.92147 1.01675 0.90123 0.88338 0.87238 0.84443 0.84038 0.84879 0.82939 0.81470 0.85803 0.87952 0.81861 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.93 11.00 21.82 0.24 -42.69 16 2 C 0.03 1.72 5.10 85.25 0.44 2.16 16 3 Si 0.98 37.81 29.59 68.60 2.03 39.84 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 6 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 7 C -0.49 -25.77 8.99 23.41 0.21 -25.56 16 8 H 0.08 4.05 7.90 -2.91 -0.02 4.02 16 9 C 0.08 4.05 5.54 -21.42 -0.12 3.93 16 10 C -0.23 -12.26 8.38 23.09 0.19 -12.07 16 11 C -0.02 -1.05 5.74 -21.33 -0.12 -1.18 16 12 C -0.16 -6.70 9.78 22.43 0.22 -6.48 16 13 C -0.11 -3.64 9.95 22.04 0.22 -3.42 16 14 C -0.18 -5.64 9.96 22.12 0.22 -5.42 16 15 C -0.09 -3.12 8.68 22.25 0.19 -2.93 16 16 C -0.13 -5.76 5.88 -19.89 -0.12 -5.87 16 17 C -0.04 -1.77 5.59 -18.90 -0.11 -1.88 16 18 C -0.02 -0.76 5.09 -20.05 -0.10 -0.86 16 19 C -0.09 -2.66 7.67 22.50 0.17 -2.49 16 20 C -0.09 -2.11 10.04 22.31 0.22 -1.88 16 21 C 0.02 0.51 7.15 22.67 0.16 0.67 16 22 C 0.02 0.68 7.14 22.57 0.16 0.84 16 23 C -0.10 -3.57 9.50 22.58 0.21 -3.35 16 24 O -0.33 -9.04 11.41 -76.44 -0.87 -9.92 16 25 C 0.20 3.72 8.89 113.37 1.01 4.73 16 26 O -0.32 -7.52 11.40 -76.12 -0.87 -8.38 16 27 C -0.15 -6.91 9.10 22.61 0.21 -6.70 16 28 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 29 H 0.10 5.58 6.19 -2.91 -0.02 5.57 16 30 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 31 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 32 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 33 H 0.13 4.06 5.70 -2.91 -0.02 4.04 16 34 H 0.15 3.91 7.30 -2.91 -0.02 3.89 16 35 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 36 H 0.12 4.43 8.04 -2.91 -0.02 4.41 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.16 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.11 4.83 8.01 -2.91 -0.02 4.80 16 Total: -1.00 -63.92 332.84 4.90 -59.03 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 1.09 Total: 29.89 kcal Atomic # 6 Polarization: -71.05 SS G_CDS: 3.27 Total: -67.77 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.24 Total: -42.69 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -1.74 Total: -18.30 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -63.92 4.90 -59.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240902315.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.380 kcal (2) G-P(sol) polarization free energy of solvation -63.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds