Wall clock time and date at job start Tue Mar 31 2020 12:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 117.00227 * 2 1 4 4 C 1.38733 * 119.96336 * 0.02562 * 3 2 1 5 5 C 1.38722 * 120.14501 * 180.02562 * 4 3 2 6 6 O 1.35903 * 119.96122 * 179.97438 * 5 4 3 7 7 C 1.42897 * 116.99750 * 0.02562 * 6 5 4 8 8 C 1.38545 * 120.07875 * 0.02562 * 5 4 3 9 9 C 1.39340 * 119.92259 * 359.97438 * 8 5 4 10 10 C 1.48283 * 120.07551 * 179.97438 * 9 8 5 11 11 C 1.39297 * 120.13295 * 309.72750 * 10 9 8 12 12 C 1.37969 * 119.97453 * 180.26809 * 11 10 9 13 13 C 1.38682 * 120.24031 * 0.02562 * 12 11 10 14 14 F 1.35101 * 119.86244 * 180.02562 * 13 12 11 15 15 C 1.38334 * 120.27145 * 359.97438 * 13 12 11 16 16 C 1.38705 * 120.02910 * 0.02562 * 15 13 12 17 17 O 1.35665 * 120.12541 * 179.97438 * 16 15 13 18 18 C 1.34816 * 116.99627 * 354.40073 * 17 16 15 19 19 H 1.07990 * 120.00003 * 5.05615 * 18 17 16 20 20 C 1.38650 * 119.99610 * 185.06370 * 18 17 16 21 21 N 1.31554 * 119.99851 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 119.99869 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47308 * 89.99628 * 22 20 18 24 24 H 1.48500 * 109.47235 * 209.99743 * 22 20 18 25 25 H 1.48497 * 109.47312 * 329.99625 * 22 20 18 26 26 C 1.38549 * 119.96447 * 180.27658 * 3 2 1 27 27 H 1.08998 * 109.47728 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47080 * 300.00391 * 1 2 3 29 29 H 1.09002 * 109.46733 * 59.99873 * 1 2 3 30 30 H 1.07992 * 119.92251 * 0.04046 * 4 3 2 31 31 H 1.09001 * 109.47641 * 299.99850 * 7 6 5 32 32 H 1.08999 * 109.47224 * 60.00574 * 7 6 5 33 33 H 1.09005 * 109.47066 * 179.97438 * 7 6 5 34 34 H 1.07997 * 120.03928 * 180.02562 * 8 5 4 35 35 H 1.08005 * 120.01765 * 0.29892 * 11 10 9 36 36 H 1.08000 * 119.88143 * 180.02562 * 12 11 10 37 37 H 1.08008 * 119.98426 * 180.02562 * 15 13 12 38 38 H 0.97007 * 120.00182 * 180.02562 * 21 20 18 39 39 H 1.08000 * 120.03530 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2897 2.3739 0.0005 5 6 1.9156 3.6119 0.0000 6 8 1.1711 4.7488 0.0000 7 6 -0.2495 4.5940 0.0011 8 6 3.2988 3.6906 -0.0016 9 6 4.0614 2.5244 -0.0021 10 6 5.5421 2.6047 -0.0044 11 6 6.1972 3.4110 -0.9324 12 6 7.5752 3.4790 -0.9352 13 6 8.3125 2.7465 -0.0169 14 9 9.6615 2.8192 -0.0262 15 6 7.6723 1.9426 0.9091 16 6 6.2874 1.8659 0.9219 17 8 5.6575 1.0777 1.8289 18 6 6.4356 0.3058 2.6138 19 1 7.5107 0.3929 2.5612 20 6 5.8555 -0.6002 3.4885 21 7 4.5458 -0.7060 3.5528 22 14 6.9335 -1.6703 4.5756 23 1 7.1888 -0.9715 5.8609 24 1 6.2446 -2.9587 4.8411 25 1 8.2242 -1.9313 3.8893 26 6 3.4296 1.2824 -0.0058 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2114 2.3153 0.0016 31 1 -0.5557 4.0434 -0.8883 32 1 -0.5543 4.0443 0.8917 33 1 -0.7220 5.5763 0.0015 34 1 3.7854 4.6547 -0.0016 35 1 5.6267 3.9831 -1.6492 36 1 8.0816 4.1049 -1.6551 37 1 8.2510 1.3745 1.6224 38 1 4.1398 -1.3396 4.1650 39 1 4.0178 0.3766 -0.0107 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241130847.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:25 Heat of formation + Delta-G solvation = -93.407652 kcal Electronic energy + Delta-G solvation = -26204.389197 eV Core-core repulsion = 22186.406955 eV Total energy + Delta-G solvation = -4017.982242 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -48.31813 -40.20209 -39.10895 -38.50338 -36.71984 -35.80908 -32.41742 -31.31718 -29.96599 -29.35519 -28.25323 -27.37854 -26.37248 -25.46701 -22.72609 -22.22875 -21.48716 -20.47357 -18.39107 -18.30139 -17.30316 -16.67521 -15.77306 -15.69170 -15.59734 -15.28779 -15.25519 -15.15583 -14.98353 -14.91132 -14.43377 -14.26861 -13.62199 -13.35436 -13.26370 -12.93236 -12.62271 -12.35628 -12.16970 -11.92254 -11.70785 -11.40062 -11.35876 -11.27567 -10.91687 -10.88748 -10.71993 -10.69126 -10.50003 -10.13439 -9.62630 -8.94226 -8.52134 -7.92499 -7.53085 -7.27232 -6.54543 -4.13868 1.40644 1.98139 2.12140 2.16098 3.08913 3.10277 3.14897 3.42551 3.60414 3.88085 4.12193 4.41301 4.83915 4.98712 5.00648 5.09073 5.14715 5.15530 5.16270 5.27943 5.39144 5.44202 5.49849 5.57928 5.61512 5.62765 5.72041 5.93911 6.02912 6.25697 6.41205 6.57163 6.63680 6.73677 6.81964 6.89756 6.95899 7.11869 7.15840 7.29849 7.48925 7.61278 7.86229 7.88863 8.88468 9.52196 10.60343 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.009453 B = 0.005382 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.234086 B = 5201.331186 C = 7484.891115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.308 6.308 3 C 0.166 3.834 4 C -0.304 4.304 5 C 0.153 3.847 6 O -0.318 6.318 7 C 0.030 3.970 8 C -0.182 4.182 9 C 0.063 3.937 10 C -0.146 4.146 11 C -0.027 4.027 12 C -0.251 4.251 13 C 0.148 3.852 14 F -0.151 7.151 15 C -0.271 4.271 16 C 0.188 3.812 17 O -0.148 6.148 18 C -0.399 4.399 19 H 0.094 0.906 20 C 0.046 3.954 21 N -0.844 5.844 22 Si 0.940 3.060 23 H -0.272 1.272 24 H -0.276 1.276 25 H -0.266 1.266 26 C -0.141 4.141 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.127 0.873 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.272 0.728 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.476 5.411 -7.146 11.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.221 6.221 3 C 0.120 3.880 4 C -0.324 4.324 5 C 0.108 3.892 6 O -0.232 6.232 7 C -0.066 4.066 8 C -0.201 4.201 9 C 0.063 3.937 10 C -0.147 4.147 11 C -0.045 4.045 12 C -0.271 4.271 13 C 0.128 3.872 14 F -0.130 7.130 15 C -0.292 4.292 16 C 0.131 3.869 17 O -0.049 6.049 18 C -0.474 4.474 19 H 0.112 0.888 20 C -0.161 4.161 21 N -0.476 5.476 22 Si 0.765 3.235 23 H -0.198 1.198 24 H -0.201 1.201 25 H -0.190 1.190 26 C -0.160 4.160 27 H 0.114 0.886 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.144 0.856 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.159 0.841 38 H 0.082 0.918 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.733 5.211 -6.929 11.617 hybrid contribution 0.308 -0.586 0.732 0.987 sum -7.425 4.625 -6.197 10.720 Atomic orbital electron populations 1.22967 0.79393 1.03463 1.00710 1.86153 1.20528 1.26964 1.88485 1.18568 0.91921 0.83256 0.94241 1.21096 0.99745 0.92084 1.19455 1.18469 0.90781 0.84179 0.95782 1.86049 1.18466 1.29567 1.89080 1.22967 0.79263 1.03246 1.01096 1.20272 0.89849 0.98737 1.11193 1.17969 0.91345 0.91052 0.93345 1.17748 0.90719 1.05634 1.00636 1.20539 0.92968 0.95103 0.95931 1.20447 0.94151 1.08104 1.04351 1.17540 0.75863 0.97271 0.96499 1.91419 1.30337 1.95170 1.96039 1.20978 0.95029 1.08029 1.05124 1.18931 0.89458 0.90172 0.88300 1.84028 1.34547 1.46414 1.39917 1.21399 0.90731 1.17194 1.18122 0.88816 1.25308 0.96413 0.96922 0.97439 1.70061 1.09008 1.33817 1.34714 0.85717 0.79243 0.78896 0.79682 1.19760 1.20130 1.19019 1.20425 0.90784 0.98604 1.06189 0.88578 0.92978 0.93275 0.85570 0.93040 0.92914 0.88623 0.85368 0.85558 0.86067 0.84110 0.91790 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.31 -5.62 10.49 -19.41 -0.20 -5.83 16 3 C 0.17 3.18 6.68 -39.28 -0.26 2.92 16 4 C -0.30 -5.06 8.02 -39.22 -0.31 -5.38 16 5 C 0.15 2.61 6.68 -39.29 -0.26 2.35 16 6 O -0.32 -4.76 10.49 -19.43 -0.20 -4.96 16 7 C 0.03 0.30 9.81 101.05 0.99 1.30 16 8 C -0.18 -3.32 9.45 -39.06 -0.37 -3.69 16 9 C 0.06 1.29 5.27 -104.94 -0.55 0.73 16 10 C -0.15 -3.01 5.48 -104.72 -0.57 -3.59 16 11 C -0.03 -0.47 9.51 -39.29 -0.37 -0.85 16 12 C -0.25 -4.37 10.01 -39.52 -0.40 -4.76 16 13 C 0.15 2.88 7.29 -39.38 -0.29 2.59 16 14 F -0.15 -2.83 17.26 2.25 0.04 -2.79 16 15 C -0.27 -5.91 9.14 -39.37 -0.36 -6.27 16 16 C 0.19 4.41 6.55 -38.75 -0.25 4.15 16 17 O -0.15 -4.00 8.13 0.35 0.00 -4.00 16 18 C -0.40 -10.70 9.49 30.88 0.29 -10.40 16 19 H 0.09 2.35 5.21 -52.49 -0.27 2.07 16 20 C 0.05 1.22 5.49 -17.52 -0.10 1.12 16 21 N -0.84 -23.75 13.67 55.48 0.76 -22.99 16 22 Si 0.94 19.99 29.55 -169.99 -5.02 14.96 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 26 C -0.14 -3.02 8.72 -39.06 -0.34 -3.36 16 27 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 29 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 30 H 0.13 1.69 4.50 -52.49 -0.24 1.46 16 31 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 32 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.13 2.14 8.04 -52.49 -0.42 1.72 16 35 H 0.13 1.83 8.04 -52.48 -0.42 1.40 16 36 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 37 H 0.14 3.08 5.64 -52.48 -0.30 2.78 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.14 3.19 7.71 -52.49 -0.40 2.79 16 LS Contribution 340.72 15.07 5.13 5.13 Total: -1.00 -30.55 340.72 -5.71 -36.26 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.05 Total: 5.98 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -2.17 Total: -21.77 kcal Atomic # 7 Polarization: -23.75 SS G_CDS: 0.76 Total: -22.99 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.40 Total: -14.79 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.79 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.55 -5.71 -36.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241130847.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.145 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds