Wall clock time and date at job start Tue Mar 31 2020 12:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 117.00227 * 2 1 4 4 C 1.38733 * 119.96336 * 0.02562 * 3 2 1 5 5 C 1.38722 * 120.14501 * 180.02562 * 4 3 2 6 6 O 1.35903 * 119.96122 * 179.97438 * 5 4 3 7 7 C 1.42897 * 116.99750 * 0.02562 * 6 5 4 8 8 C 1.38545 * 120.07875 * 0.02562 * 5 4 3 9 9 C 1.39340 * 119.92259 * 359.97438 * 8 5 4 10 10 C 1.48283 * 120.07551 * 179.97438 * 9 8 5 11 11 C 1.39297 * 120.13295 * 309.72750 * 10 9 8 12 12 C 1.37969 * 119.97453 * 180.26809 * 11 10 9 13 13 C 1.38682 * 120.24031 * 0.02562 * 12 11 10 14 14 F 1.35101 * 119.86244 * 180.02562 * 13 12 11 15 15 C 1.38334 * 120.27145 * 359.97438 * 13 12 11 16 16 C 1.38705 * 120.02910 * 0.02562 * 15 13 12 17 17 O 1.35665 * 120.12541 * 179.97438 * 16 15 13 18 18 C 1.34816 * 116.99627 * 354.40073 * 17 16 15 19 19 H 1.07990 * 120.00003 * 5.05615 * 18 17 16 20 20 C 1.38650 * 119.99610 * 185.06370 * 18 17 16 21 21 N 1.31554 * 119.99851 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 119.99869 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47308 * 89.99628 * 22 20 18 24 24 H 1.48500 * 109.47235 * 209.99743 * 22 20 18 25 25 H 1.48497 * 109.47312 * 329.99625 * 22 20 18 26 26 C 1.38549 * 119.96447 * 180.27658 * 3 2 1 27 27 H 1.08998 * 109.47728 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47080 * 300.00391 * 1 2 3 29 29 H 1.09002 * 109.46733 * 59.99873 * 1 2 3 30 30 H 1.07992 * 119.92251 * 0.04046 * 4 3 2 31 31 H 1.09001 * 109.47641 * 299.99850 * 7 6 5 32 32 H 1.08999 * 109.47224 * 60.00574 * 7 6 5 33 33 H 1.09005 * 109.47066 * 179.97438 * 7 6 5 34 34 H 1.07997 * 120.03928 * 180.02562 * 8 5 4 35 35 H 1.08005 * 120.01765 * 0.29892 * 11 10 9 36 36 H 1.08000 * 119.88143 * 180.02562 * 12 11 10 37 37 H 1.08008 * 119.98426 * 180.02562 * 15 13 12 38 38 H 0.97007 * 120.00182 * 180.02562 * 21 20 18 39 39 H 1.08000 * 120.03530 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2897 2.3739 0.0005 5 6 1.9156 3.6119 0.0000 6 8 1.1711 4.7488 0.0000 7 6 -0.2495 4.5940 0.0011 8 6 3.2988 3.6906 -0.0016 9 6 4.0614 2.5244 -0.0021 10 6 5.5421 2.6047 -0.0044 11 6 6.1972 3.4110 -0.9324 12 6 7.5752 3.4790 -0.9352 13 6 8.3125 2.7465 -0.0169 14 9 9.6615 2.8192 -0.0262 15 6 7.6723 1.9426 0.9091 16 6 6.2874 1.8659 0.9219 17 8 5.6575 1.0777 1.8289 18 6 6.4356 0.3058 2.6138 19 1 7.5107 0.3929 2.5612 20 6 5.8555 -0.6002 3.4885 21 7 4.5458 -0.7060 3.5528 22 14 6.9335 -1.6703 4.5756 23 1 7.1888 -0.9715 5.8609 24 1 6.2446 -2.9587 4.8411 25 1 8.2242 -1.9313 3.8893 26 6 3.4296 1.2824 -0.0058 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2114 2.3153 0.0016 31 1 -0.5557 4.0434 -0.8883 32 1 -0.5543 4.0443 0.8917 33 1 -0.7220 5.5763 0.0015 34 1 3.7854 4.6547 -0.0016 35 1 5.6267 3.9831 -1.6492 36 1 8.0816 4.1049 -1.6551 37 1 8.2510 1.3745 1.6224 38 1 4.1398 -1.3396 4.1650 39 1 4.0178 0.3766 -0.0107 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241130847.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:24 Heat of formation + Delta-G solvation = -111.713190 kcal Electronic energy + Delta-G solvation = -26205.182984 eV Core-core repulsion = 22186.406955 eV Total energy + Delta-G solvation = -4018.776029 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.87138 -41.57817 -40.73949 -39.73369 -38.34065 -37.25637 -34.33690 -32.80632 -31.30690 -30.94075 -29.61898 -28.55765 -27.51747 -27.28224 -24.23184 -23.75931 -23.00147 -21.91330 -20.10429 -19.76453 -18.96365 -17.90706 -17.27328 -17.05453 -16.96254 -16.86442 -16.66034 -16.48102 -16.40588 -16.35112 -15.96694 -15.59283 -15.39579 -15.07242 -14.79223 -14.23887 -14.06018 -13.71286 -13.52904 -13.37808 -13.11979 -12.92522 -12.66959 -12.44624 -12.42991 -12.31756 -12.16280 -12.12363 -12.07227 -11.48673 -11.41259 -10.83101 -9.98402 -9.49939 -8.94054 -8.91103 -8.48377 -6.17033 -0.11864 0.51566 0.54606 0.64435 1.33902 1.42085 1.50249 2.13996 2.28907 2.38613 2.60312 2.83895 3.08767 3.23081 3.46250 3.71515 3.97286 3.99626 4.12674 4.15441 4.21203 4.33956 4.35951 4.38833 4.41191 4.44476 4.50134 4.65926 4.72535 4.79858 4.87423 5.03185 5.13381 5.20118 5.24912 5.28923 5.36551 5.43576 5.67436 5.72341 5.95693 6.03733 6.26435 6.58088 6.93668 7.67868 8.71089 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.009453 B = 0.005382 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.234086 B = 5201.331186 C = 7484.891115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.158 3.842 4 C -0.295 4.295 5 C 0.161 3.839 6 O -0.324 6.324 7 C 0.015 3.985 8 C -0.188 4.188 9 C 0.049 3.951 10 C -0.150 4.150 11 C -0.017 4.017 12 C -0.220 4.220 13 C 0.141 3.859 14 F -0.144 7.144 15 C -0.286 4.286 16 C 0.159 3.841 17 O -0.193 6.193 18 C -0.422 4.422 19 H 0.099 0.901 20 C -0.010 4.010 21 N -0.899 5.899 22 Si 1.012 2.988 23 H -0.263 1.263 24 H -0.270 1.270 25 H -0.256 1.256 26 C -0.176 4.176 27 H 0.117 0.883 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.162 0.838 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.126 0.874 34 H 0.146 0.854 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.129 0.871 38 H 0.273 0.727 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.290 7.728 -8.776 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.112 3.888 4 C -0.314 4.314 5 C 0.115 3.885 6 O -0.238 6.238 7 C -0.079 4.079 8 C -0.207 4.207 9 C 0.048 3.952 10 C -0.151 4.151 11 C -0.035 4.035 12 C -0.239 4.239 13 C 0.122 3.878 14 F -0.123 7.123 15 C -0.306 4.306 16 C 0.106 3.894 17 O -0.097 6.097 18 C -0.498 4.498 19 H 0.116 0.884 20 C -0.210 4.210 21 N -0.534 5.534 22 Si 0.832 3.168 23 H -0.188 1.188 24 H -0.195 1.195 25 H -0.180 1.180 26 C -0.195 4.195 27 H 0.135 0.865 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.179 0.821 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.144 0.856 34 H 0.163 0.837 35 H 0.186 0.814 36 H 0.183 0.817 37 H 0.147 0.853 38 H 0.082 0.918 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.533 7.569 -8.599 14.285 hybrid contribution 0.484 -1.063 0.975 1.521 sum -8.050 6.506 -7.624 12.855 Atomic orbital electron populations 1.23364 0.76373 1.05570 1.02291 1.86117 1.23785 1.27005 1.88395 1.18658 0.91448 0.84603 0.94073 1.21350 1.01319 0.90848 1.17878 1.18529 0.90784 0.85041 0.94110 1.86055 1.20883 1.28386 1.88461 1.23392 0.76596 1.05715 1.02161 1.20393 0.90699 0.98401 1.11183 1.18023 0.91367 0.91441 0.94322 1.18176 0.91414 1.05200 1.00352 1.21018 0.93332 0.93971 0.95151 1.20968 0.94008 1.05947 1.02957 1.17633 0.76300 0.97323 0.96548 1.91436 1.29799 1.95091 1.95986 1.21011 0.94639 1.08944 1.06000 1.19471 0.90524 0.90491 0.88954 1.84028 1.35328 1.48428 1.41910 1.21797 0.91203 1.18017 1.18781 0.88380 1.26459 0.97807 0.98040 0.98712 1.70207 1.11022 1.35607 1.36608 0.84679 0.77511 0.76938 0.77698 1.18809 1.19474 1.17998 1.20276 0.92053 0.97718 1.09467 0.86488 0.92177 0.90652 0.82059 0.91346 0.92375 0.85588 0.83667 0.81390 0.81706 0.85327 0.91828 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.54 16 2 O -0.34 -12.76 10.49 -92.38 -0.97 -13.73 16 3 C 0.16 6.25 6.68 22.46 0.15 6.40 16 4 C -0.29 -9.39 8.02 22.50 0.18 -9.21 16 5 C 0.16 5.21 6.68 22.46 0.15 5.36 16 6 O -0.32 -8.67 10.49 -92.46 -0.97 -9.64 16 7 C 0.02 0.26 9.81 113.37 1.11 1.37 16 8 C -0.19 -6.69 9.45 22.61 0.21 -6.48 16 9 C 0.05 2.04 5.27 -20.07 -0.11 1.93 16 10 C -0.15 -6.29 5.48 -19.93 -0.11 -6.40 16 11 C -0.02 -0.55 9.51 22.46 0.21 -0.34 16 12 C -0.22 -6.88 10.01 22.31 0.22 -6.65 16 13 C 0.14 5.34 7.29 22.40 0.16 5.50 16 14 F -0.14 -5.17 17.26 44.97 0.78 -4.39 16 15 C -0.29 -12.89 9.14 22.40 0.20 -12.68 16 16 C 0.16 7.85 6.55 22.81 0.15 8.00 16 17 O -0.19 -11.28 8.13 -21.66 -0.18 -11.45 16 18 C -0.42 -24.33 9.49 67.92 0.64 -23.68 16 19 H 0.10 5.28 5.21 -2.92 -0.02 5.26 16 20 C -0.01 -0.56 5.49 84.83 0.47 -0.09 16 21 N -0.90 -54.21 13.67 21.61 0.30 -53.91 16 22 Si 1.01 42.93 29.55 68.60 2.03 44.96 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 26 C -0.18 -8.05 8.72 22.61 0.20 -7.86 16 27 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.06 1.30 7.65 -2.39 -0.02 1.29 16 29 H 0.07 1.36 7.66 -2.39 -0.02 1.34 16 30 H 0.16 3.82 4.50 -2.91 -0.01 3.81 16 31 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 32 H 0.06 0.93 7.66 -2.39 -0.02 0.91 16 33 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.15 4.53 8.04 -2.91 -0.02 4.51 16 35 H 0.17 4.08 8.04 -2.91 -0.02 4.06 16 36 H 0.17 3.84 8.06 -2.91 -0.02 3.82 16 37 H 0.13 5.98 5.64 -2.91 -0.02 5.97 16 38 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 39 H 0.09 4.98 7.71 -2.91 -0.02 4.95 16 Total: -1.00 -73.59 340.72 7.05 -66.55 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 1.10 Total: 24.93 kcal Atomic # 6 Polarization: -48.27 SS G_CDS: 4.97 Total: -43.30 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.30 Total: -53.91 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -2.12 Total: -34.83 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.78 Total: -4.39 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -73.59 7.05 -66.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241130847.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.168 kcal (2) G-P(sol) polarization free energy of solvation -73.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds