Wall clock time and date at job start Tue Mar 31 2020 12:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36011 * 117.00244 * 2 1 4 4 C 1.38631 * 119.94996 * 359.72545 * 3 2 1 5 5 C 1.38039 * 120.12428 * 179.71906 * 4 3 2 6 6 C 1.50695 * 119.99333 * 180.29834 * 5 4 3 7 7 C 1.50702 * 109.47468 * 265.26172 * 6 5 4 8 8 H 1.08000 * 119.99717 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00469 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99803 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00408 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46698 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47035 * 119.99706 * 11 9 7 14 14 H 1.48499 * 109.47199 * 239.99869 * 11 9 7 15 15 C 1.39347 * 120.01940 * 0.56154 * 5 4 3 16 16 C 1.48405 * 120.05017 * 179.74483 * 15 5 4 17 17 C 1.34541 * 122.76547 * 244.68360 * 16 15 5 18 18 S 1.75852 * 109.54742 * 179.89953 * 17 16 15 19 19 C 1.75809 * 91.14799 * 0.30394 * 18 17 16 20 20 C 1.33075 * 109.92508 * 359.82736 * 19 18 17 21 21 C 1.50702 * 122.54798 * 179.97438 * 20 19 18 22 22 C 1.39338 * 119.90239 * 359.71186 * 15 5 4 23 23 C 1.38364 * 119.87679 * 0.02562 * 22 15 5 24 24 O 1.35997 * 120.01118 * 180.02562 * 23 22 15 25 25 C 1.42899 * 116.99827 * 359.97352 * 24 23 22 26 26 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46938 * 59.99837 * 1 2 3 28 28 H 1.09004 * 109.46926 * 299.99958 * 1 2 3 29 29 H 1.08001 * 119.93406 * 359.97438 * 4 3 2 30 30 H 1.09005 * 109.46644 * 25.25259 * 6 5 4 31 31 H 1.08998 * 109.47560 * 145.25341 * 6 5 4 32 32 H 0.96996 * 120.00195 * 180.02562 * 10 9 7 33 33 H 1.08004 * 125.22217 * 359.97438 * 17 16 15 34 34 H 1.07996 * 125.03942 * 179.79149 * 19 18 17 35 35 H 1.08997 * 109.46815 * 270.02094 * 21 20 19 36 36 H 1.09005 * 109.46880 * 30.01574 * 21 20 19 37 37 H 1.08999 * 109.47282 * 150.01700 * 21 20 19 38 38 H 1.08001 * 120.05869 * 179.97438 * 22 15 5 39 39 H 1.09003 * 109.46775 * 180.02562 * 25 24 23 40 40 H 1.09001 * 109.47151 * 299.99609 * 25 24 23 41 41 H 1.08988 * 109.47163 * 60.00348 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.2906 2.3739 -0.0058 5 6 1.9135 3.6057 0.0001 6 6 1.0888 4.8669 0.0006 7 6 0.9174 5.3557 -1.4146 8 1 1.3616 4.8080 -2.2326 9 6 0.1934 6.5020 -1.6652 10 7 -0.3480 7.1688 -0.6691 11 14 -0.0185 7.1083 -3.4193 12 1 0.6831 6.1874 -4.3494 13 1 -1.4637 7.1483 -3.7580 14 1 0.5573 8.4713 -3.5450 15 6 3.3048 3.6833 0.0000 16 6 3.9753 5.0073 0.0005 17 6 4.7357 5.4388 -1.0221 18 16 5.3534 7.0448 -0.6591 19 6 4.5383 7.0448 0.8986 20 6 3.8738 5.9036 1.0627 21 6 3.0729 5.6030 2.3034 22 6 4.0657 2.5160 0.0000 23 6 3.4369 1.2834 -0.0004 24 8 4.1768 0.1424 0.0002 25 6 5.5981 0.2908 0.0006 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 0.2122 2.3152 -0.0107 30 1 0.1104 4.6610 0.4348 31 1 1.5944 5.6315 0.5903 32 1 -0.8576 7.9750 -0.8454 33 1 4.9350 4.8845 -1.9273 34 1 4.5723 7.8512 1.6161 35 1 3.7106 5.1097 3.0368 36 1 2.6895 6.5333 2.7226 37 1 2.2393 4.9488 2.0481 38 1 5.1442 2.5732 -0.0005 39 1 6.0662 -0.6936 0.0006 40 1 5.9063 0.8393 -0.8895 41 1 5.9058 0.8398 0.8904 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241729920.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:37 Heat of formation + Delta-G solvation = -19.762779 kcal Electronic energy + Delta-G solvation = -24778.496215 eV Core-core repulsion = 21329.920631 eV Total energy + Delta-G solvation = -3448.575584 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.25539 -38.44629 -38.08302 -35.98686 -33.17968 -31.16939 -30.78823 -29.35748 -27.98714 -27.03990 -26.80945 -25.79581 -23.35252 -22.58930 -21.11044 -20.48132 -18.38246 -17.47081 -17.12119 -16.36692 -16.26491 -16.11897 -15.71038 -14.96828 -14.71103 -14.58401 -14.10747 -13.83523 -13.68421 -13.16501 -12.79846 -12.70944 -12.44296 -12.13212 -12.11299 -11.75197 -11.65179 -11.50632 -11.39233 -11.15058 -11.05699 -10.90741 -10.79588 -10.54826 -10.43790 -10.33609 -10.18774 -9.55558 -9.26111 -8.38403 -8.25465 -8.04845 -7.75382 -7.07546 -6.02027 -4.03724 1.49345 1.80820 2.00349 2.20206 2.50188 3.24883 3.29244 3.37167 3.41653 3.59551 3.62395 4.23903 4.48589 5.11351 5.25104 5.29570 5.31701 5.33643 5.37146 5.42245 5.44582 5.58110 5.66134 5.70475 5.75737 5.90119 5.91222 5.95189 6.03388 6.10240 6.20227 6.40738 6.60096 6.67001 6.88536 6.97133 7.02703 7.11212 7.24278 7.38916 7.55721 7.80680 7.93169 7.98062 8.34262 8.99325 9.58749 11.07607 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.009895 B = 0.006141 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.963628 B = 4558.100601 C = 6257.970183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.099 3.901 4 C -0.176 4.176 5 C -0.012 4.012 6 C 0.039 3.961 7 C -0.500 4.500 8 H 0.054 0.946 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.887 3.113 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.283 1.283 15 C -0.036 4.036 16 C -0.023 4.023 17 C -0.197 4.197 18 S 0.065 5.935 19 C -0.220 4.220 20 C -0.068 4.068 21 C -0.102 4.102 22 C -0.156 4.156 23 C 0.068 3.932 24 O -0.313 6.313 25 C 0.030 3.970 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.134 0.866 30 H 0.024 0.976 31 H 0.053 0.947 32 H 0.260 0.740 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.050 0.950 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.345 -7.924 4.075 12.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.054 3.946 4 C -0.195 4.195 5 C -0.013 4.013 6 C 0.003 3.997 7 C -0.538 4.538 8 H 0.072 0.928 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.715 3.285 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.209 1.209 15 C -0.039 4.039 16 C -0.035 4.035 17 C -0.332 4.332 18 S 0.330 5.670 19 C -0.354 4.354 20 C -0.080 4.080 21 C -0.161 4.161 22 C -0.175 4.175 23 C 0.024 3.976 24 O -0.227 6.227 25 C -0.066 4.066 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.152 0.848 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.145 0.855 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.218 -7.075 3.316 12.863 hybrid contribution -1.180 -0.117 -0.475 1.278 sum 9.038 -7.192 2.841 11.895 Atomic orbital electron populations 1.23005 0.79037 1.03127 1.01629 1.86088 1.20690 1.26536 1.89441 1.18296 0.88910 0.84929 1.02435 1.20978 0.99935 0.90708 1.07854 1.20488 0.92628 0.96437 0.91741 1.18626 0.93875 0.88799 0.98410 1.20970 1.32379 1.08818 0.91670 0.92772 1.24910 0.95689 0.96547 0.96782 1.69948 1.35100 1.17635 1.30512 0.86604 0.77782 0.78861 0.85287 1.19749 1.21030 1.20922 1.17939 0.92243 0.90121 1.03621 1.17388 0.97655 0.94733 0.93710 1.25446 1.06180 0.98516 1.03062 1.83801 1.52140 1.16172 1.14854 1.25037 1.07424 1.02295 1.00683 1.18764 0.98672 0.93326 0.97277 1.20747 0.99331 1.02532 0.93475 1.20937 0.99414 0.90393 1.06744 1.17869 0.87965 0.85476 1.06300 1.86109 1.17966 1.28571 1.90075 1.22938 0.79642 1.03005 1.01000 0.88860 0.92587 0.92777 0.84820 0.95773 0.92867 0.93056 0.82447 0.82461 0.92194 0.91671 0.89781 0.85461 0.88899 0.93125 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.35 16 2 O -0.31 -5.38 10.27 -34.44 -0.35 -5.73 16 3 C 0.10 1.84 6.70 -39.07 -0.26 1.58 16 4 C -0.18 -3.42 8.65 -39.51 -0.34 -3.77 16 5 C -0.01 -0.26 4.25 -104.29 -0.44 -0.70 16 6 C 0.04 0.97 3.89 -29.04 -0.11 0.86 16 7 C -0.50 -13.66 9.09 -34.44 -0.31 -13.97 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 11 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C -0.04 -0.71 4.93 -104.89 -0.52 -1.23 16 16 C -0.02 -0.43 4.50 -106.60 -0.48 -0.91 16 17 C -0.20 -3.53 11.02 29.42 0.32 -3.21 16 18 S 0.07 1.06 23.32 -107.50 -2.51 -1.45 16 19 C -0.22 -3.71 10.94 28.94 0.32 -3.39 16 20 C -0.07 -1.25 4.79 -106.00 -0.51 -1.76 16 21 C -0.10 -1.72 8.92 36.01 0.32 -1.40 16 22 C -0.16 -2.69 8.74 -39.13 -0.34 -3.03 16 23 C 0.07 1.22 6.69 -39.17 -0.26 0.96 16 24 O -0.31 -5.11 10.27 -34.40 -0.35 -5.47 16 25 C 0.03 0.34 9.81 101.05 0.99 1.33 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.72 7.64 -51.93 -0.40 0.33 16 28 H 0.05 0.66 7.67 -51.93 -0.40 0.26 16 29 H 0.13 2.45 6.28 -52.49 -0.33 2.12 16 30 H 0.02 0.63 8.05 -51.93 -0.42 0.21 16 31 H 0.05 1.34 4.17 -51.93 -0.22 1.12 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.16 2.59 8.06 -52.48 -0.42 2.17 16 34 H 0.16 2.27 8.06 -52.49 -0.42 1.84 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 37 H 0.08 1.57 4.82 -51.93 -0.25 1.32 16 38 H 0.13 1.88 6.29 -52.49 -0.33 1.55 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 41 H 0.05 0.53 7.66 -51.94 -0.40 0.13 16 LS Contribution 351.18 15.07 5.29 5.29 Total: -1.00 -31.37 351.18 -8.15 -39.52 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.21 Total: 1.97 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: -0.73 Total: -25.68 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.74 Total: -25.04 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.71 Total: -11.20 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.51 Total: -1.45 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.37 -8.15 -39.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241729920.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.758 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds