Wall clock time and date at job start Tue Mar 31 2020 12:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36011 * 117.00244 * 2 1 4 4 C 1.38631 * 119.94996 * 359.72545 * 3 2 1 5 5 C 1.38039 * 120.12428 * 179.71906 * 4 3 2 6 6 C 1.50695 * 119.99333 * 180.29834 * 5 4 3 7 7 C 1.50702 * 109.47468 * 265.26172 * 6 5 4 8 8 H 1.08000 * 119.99717 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00469 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99803 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00408 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46698 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47035 * 119.99706 * 11 9 7 14 14 H 1.48499 * 109.47199 * 239.99869 * 11 9 7 15 15 C 1.39347 * 120.01940 * 0.56154 * 5 4 3 16 16 C 1.48405 * 120.05017 * 179.74483 * 15 5 4 17 17 C 1.34541 * 122.76547 * 244.68360 * 16 15 5 18 18 S 1.75852 * 109.54742 * 179.89953 * 17 16 15 19 19 C 1.75809 * 91.14799 * 0.30394 * 18 17 16 20 20 C 1.33075 * 109.92508 * 359.82736 * 19 18 17 21 21 C 1.50702 * 122.54798 * 179.97438 * 20 19 18 22 22 C 1.39338 * 119.90239 * 359.71186 * 15 5 4 23 23 C 1.38364 * 119.87679 * 0.02562 * 22 15 5 24 24 O 1.35997 * 120.01118 * 180.02562 * 23 22 15 25 25 C 1.42899 * 116.99827 * 359.97352 * 24 23 22 26 26 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46938 * 59.99837 * 1 2 3 28 28 H 1.09004 * 109.46926 * 299.99958 * 1 2 3 29 29 H 1.08001 * 119.93406 * 359.97438 * 4 3 2 30 30 H 1.09005 * 109.46644 * 25.25259 * 6 5 4 31 31 H 1.08998 * 109.47560 * 145.25341 * 6 5 4 32 32 H 0.96996 * 120.00195 * 180.02562 * 10 9 7 33 33 H 1.08004 * 125.22217 * 359.97438 * 17 16 15 34 34 H 1.07996 * 125.03942 * 179.79149 * 19 18 17 35 35 H 1.08997 * 109.46815 * 270.02094 * 21 20 19 36 36 H 1.09005 * 109.46880 * 30.01574 * 21 20 19 37 37 H 1.08999 * 109.47282 * 150.01700 * 21 20 19 38 38 H 1.08001 * 120.05869 * 179.97438 * 22 15 5 39 39 H 1.09003 * 109.46775 * 180.02562 * 25 24 23 40 40 H 1.09001 * 109.47151 * 299.99609 * 25 24 23 41 41 H 1.08988 * 109.47163 * 60.00348 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.2906 2.3739 -0.0058 5 6 1.9135 3.6057 0.0001 6 6 1.0888 4.8669 0.0006 7 6 0.9174 5.3557 -1.4146 8 1 1.3616 4.8080 -2.2326 9 6 0.1934 6.5020 -1.6652 10 7 -0.3480 7.1688 -0.6691 11 14 -0.0185 7.1083 -3.4193 12 1 0.6831 6.1874 -4.3494 13 1 -1.4637 7.1483 -3.7580 14 1 0.5573 8.4713 -3.5450 15 6 3.3048 3.6833 0.0000 16 6 3.9753 5.0073 0.0005 17 6 4.7357 5.4388 -1.0221 18 16 5.3534 7.0448 -0.6591 19 6 4.5383 7.0448 0.8986 20 6 3.8738 5.9036 1.0627 21 6 3.0729 5.6030 2.3034 22 6 4.0657 2.5160 0.0000 23 6 3.4369 1.2834 -0.0004 24 8 4.1768 0.1424 0.0002 25 6 5.5981 0.2908 0.0006 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 0.2122 2.3152 -0.0107 30 1 0.1104 4.6610 0.4348 31 1 1.5944 5.6315 0.5903 32 1 -0.8576 7.9750 -0.8454 33 1 4.9350 4.8845 -1.9273 34 1 4.5723 7.8512 1.6161 35 1 3.7106 5.1097 3.0368 36 1 2.6895 6.5333 2.7226 37 1 2.2393 4.9488 2.0481 38 1 5.1442 2.5732 -0.0005 39 1 6.0662 -0.6936 0.0006 40 1 5.9063 0.8393 -0.8895 41 1 5.9058 0.8398 0.8904 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241729920.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:36 Heat of formation + Delta-G solvation = -36.164789 kcal Electronic energy + Delta-G solvation = -24779.207460 eV Core-core repulsion = 21329.920631 eV Total energy + Delta-G solvation = -3449.286829 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.108 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.62130 -39.79513 -39.31885 -37.38682 -35.15278 -32.73775 -32.26930 -30.72201 -29.37651 -28.37446 -28.00122 -27.22527 -25.12908 -24.00029 -22.48769 -21.98841 -19.70126 -18.80443 -18.60961 -18.23566 -17.67928 -17.44197 -16.93510 -16.52901 -16.08645 -16.00924 -15.36266 -15.19315 -15.08757 -14.66305 -14.43673 -14.09547 -13.82168 -13.54901 -13.45349 -13.18227 -13.11668 -12.94268 -12.82073 -12.74179 -12.53580 -12.29309 -12.23701 -12.04048 -12.01741 -11.81898 -11.60263 -11.38173 -11.13352 -10.50632 -9.66155 -9.44225 -9.07214 -8.52148 -8.11210 -6.21801 0.11907 0.39917 0.53406 0.89357 1.15898 1.35789 1.38276 1.48944 1.86281 2.39230 2.41173 2.43558 2.82374 3.18421 3.83152 3.96720 4.08766 4.14412 4.30846 4.40744 4.41113 4.44283 4.45623 4.47518 4.55925 4.61371 4.71757 4.73861 4.76932 4.78763 4.82762 5.04898 5.21077 5.27372 5.29392 5.41276 5.50447 5.63526 5.67208 5.78588 5.83224 6.04781 6.16540 6.27796 6.67579 6.87820 7.43560 8.95280 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.009895 B = 0.006141 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.963628 B = 4558.100601 C = 6257.970183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.324 6.324 3 C 0.092 3.908 4 C -0.181 4.181 5 C -0.039 4.039 6 C 0.052 3.948 7 C -0.507 4.507 8 H 0.043 0.957 9 C 0.015 3.985 10 N -0.923 5.923 11 Si 0.943 3.057 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.278 1.278 15 C -0.039 4.039 16 C -0.043 4.043 17 C -0.213 4.213 18 S 0.104 5.896 19 C -0.225 4.225 20 C -0.093 4.093 21 C -0.098 4.098 22 C -0.149 4.149 23 C 0.073 3.927 24 O -0.327 6.327 25 C 0.018 3.982 26 H 0.127 0.873 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.134 0.866 30 H -0.004 1.004 31 H 0.046 0.954 32 H 0.262 0.738 33 H 0.167 0.833 34 H 0.180 0.820 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.155 0.845 39 H 0.121 0.879 40 H 0.059 0.941 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.997 -8.537 3.559 14.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.238 6.238 3 C 0.046 3.954 4 C -0.200 4.200 5 C -0.040 4.040 6 C 0.016 3.984 7 C -0.546 4.546 8 H 0.061 0.939 9 C -0.183 4.183 10 N -0.564 5.564 11 Si 0.769 3.231 12 H -0.195 1.195 13 H -0.204 1.204 14 H -0.204 1.204 15 C -0.042 4.042 16 C -0.056 4.056 17 C -0.348 4.348 18 S 0.369 5.631 19 C -0.360 4.360 20 C -0.105 4.105 21 C -0.157 4.157 22 C -0.168 4.168 23 C 0.028 3.972 24 O -0.242 6.242 25 C -0.076 4.076 26 H 0.145 0.855 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.152 0.848 30 H 0.014 0.986 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.185 0.815 34 H 0.197 0.803 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.172 0.828 39 H 0.140 0.860 40 H 0.078 0.922 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.878 -7.702 2.797 14.430 hybrid contribution -1.629 -0.021 -0.291 1.655 sum 10.249 -7.723 2.506 13.075 Atomic orbital electron populations 1.23289 0.77074 1.05371 1.01714 1.86074 1.22744 1.25764 1.89249 1.18381 0.89577 0.85013 1.02396 1.20955 1.00170 0.90769 1.08122 1.20209 0.93393 0.95459 0.94953 1.18341 0.92932 0.90450 0.96699 1.21203 1.31896 1.08727 0.92726 0.93898 1.25618 0.95567 0.96819 1.00293 1.70049 1.35909 1.18107 1.32297 0.85718 0.77947 0.78349 0.81076 1.19453 1.20356 1.20411 1.18035 0.91606 0.91289 1.03248 1.17552 0.98441 0.95021 0.94553 1.25716 1.06142 0.99757 1.03172 1.83604 1.51032 1.14562 1.13907 1.25416 1.06724 1.02328 1.01544 1.18964 0.99709 0.93995 0.97785 1.20693 0.98865 1.02367 0.93792 1.21122 1.00570 0.89378 1.05718 1.18030 0.88104 0.86223 1.04834 1.86100 1.20439 1.27935 1.89676 1.23314 0.77017 1.05297 1.01971 0.85535 0.92905 0.92321 0.84815 0.98594 0.93603 0.92927 0.81502 0.80283 0.89931 0.91365 0.92147 0.82786 0.86048 0.92211 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.81 113.37 1.11 1.61 16 2 O -0.32 -10.89 10.27 -79.66 -0.82 -11.71 16 3 C 0.09 3.39 6.70 22.60 0.15 3.54 16 4 C -0.18 -7.24 8.65 22.32 0.19 -7.05 16 5 C -0.04 -1.72 4.25 -19.65 -0.08 -1.81 16 6 C 0.05 2.68 3.89 29.10 0.11 2.80 16 7 C -0.51 -28.37 9.09 25.60 0.23 -28.14 16 8 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 9 C 0.02 0.86 5.46 84.65 0.46 1.32 16 10 N -0.92 -54.26 13.29 21.45 0.28 -53.98 16 11 Si 0.94 44.47 29.54 68.60 2.03 46.50 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 15 C -0.04 -1.53 4.93 -20.04 -0.10 -1.62 16 16 C -0.04 -1.64 4.50 -21.15 -0.10 -1.74 16 17 C -0.21 -7.41 11.02 66.97 0.74 -6.67 16 18 S 0.10 3.18 23.32 -56.49 -1.32 1.86 16 19 C -0.23 -7.32 10.94 66.66 0.73 -6.59 16 20 C -0.09 -3.36 4.79 -20.75 -0.10 -3.46 16 21 C -0.10 -3.34 8.92 71.24 0.64 -2.71 16 22 C -0.15 -4.97 8.74 22.56 0.20 -4.77 16 23 C 0.07 2.53 6.69 22.54 0.15 2.68 16 24 O -0.33 -10.03 10.27 -79.49 -0.82 -10.85 16 25 C 0.02 0.36 9.81 113.37 1.11 1.48 16 26 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.05 1.35 7.64 -2.39 -0.02 1.34 16 28 H 0.06 1.41 7.67 -2.38 -0.02 1.39 16 29 H 0.13 5.13 6.28 -2.91 -0.02 5.11 16 30 H 0.00 -0.24 8.05 -2.38 -0.02 -0.25 16 31 H 0.05 2.41 4.17 -2.39 -0.01 2.40 16 32 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 33 H 0.17 5.30 8.06 -2.91 -0.02 5.28 16 34 H 0.18 4.84 8.06 -2.91 -0.02 4.81 16 35 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.07 2.20 8.12 -2.38 -0.02 2.18 16 37 H 0.06 2.34 4.82 -2.39 -0.01 2.33 16 38 H 0.15 4.18 6.29 -2.91 -0.02 4.16 16 39 H 0.12 1.71 8.14 -2.39 -0.02 1.70 16 40 H 0.06 1.09 7.66 -2.39 -0.02 1.08 16 41 H 0.06 1.11 7.66 -2.39 -0.02 1.09 16 Total: -1.00 -67.70 351.18 5.86 -61.84 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 1.05 Total: 17.46 kcal Atomic # 6 Polarization: -56.58 SS G_CDS: 5.45 Total: -51.13 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.28 Total: -53.98 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -1.64 Total: -22.56 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.32 Total: 1.86 kcal Total: -67.70 5.86 -61.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241729920.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.676 kcal (2) G-P(sol) polarization free energy of solvation -67.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds