Wall clock time and date at job start Tue Mar 31 2020 12:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35882 * 117.00486 * 2 1 4 4 C 1.38858 * 119.92717 * 0.22739 * 3 2 1 5 5 C 1.37884 * 120.07312 * 180.27797 * 4 3 2 6 6 C 1.39452 * 119.92566 * 359.74928 * 5 4 3 7 7 C 1.48257 * 120.06955 * 179.97438 * 6 5 4 8 8 C 1.39307 * 120.14100 * 129.75094 * 7 6 5 9 9 C 1.37973 * 119.97336 * 179.72058 * 8 7 6 10 10 C 1.38679 * 120.24190 * 0.55354 * 9 8 7 11 11 F 1.35101 * 119.85923 * 179.74545 * 10 9 8 12 12 C 1.38337 * 120.27387 * 359.71758 * 10 9 8 13 13 C 1.38702 * 120.03013 * 0.02562 * 12 10 9 14 14 O 1.35661 * 120.12531 * 179.97438 * 13 12 10 15 15 C 1.34818 * 116.99906 * 354.39600 * 14 13 12 16 16 H 1.08001 * 119.99636 * 5.06162 * 15 14 13 17 17 C 1.38636 * 120.00321 * 185.06664 * 15 14 13 18 18 N 1.31569 * 119.99782 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00282 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47052 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47154 * 119.99576 * 19 17 15 22 22 H 1.48497 * 109.46989 * 239.99471 * 19 17 15 23 23 C 1.39405 * 119.86065 * 0.02562 * 6 5 4 24 24 C 1.37931 * 119.92739 * 0.02562 * 23 6 5 25 25 C 1.50704 * 119.96520 * 179.97438 * 24 23 6 26 26 O 1.42906 * 109.46964 * 0.02562 * 25 24 23 27 27 H 1.08997 * 109.47700 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47106 * 300.00246 * 1 2 3 29 29 H 1.08995 * 109.47280 * 59.99867 * 1 2 3 30 30 H 1.07997 * 119.96688 * 0.02562 * 4 3 2 31 31 H 1.07997 * 120.03833 * 179.77271 * 5 4 3 32 32 H 1.08002 * 120.00985 * 359.97275 * 8 7 6 33 33 H 1.07994 * 119.88197 * 180.25408 * 9 8 7 34 34 H 1.07999 * 119.98591 * 180.02562 * 12 10 9 35 35 H 0.97004 * 120.00008 * 180.02562 * 18 17 15 36 36 H 1.08004 * 120.03782 * 179.97438 * 23 6 5 37 37 H 1.09002 * 109.46871 * 119.99105 * 25 24 23 38 38 H 1.08990 * 109.46849 * 240.00054 * 25 24 23 39 39 H 0.96700 * 113.99942 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2883 2.3743 0.0048 5 6 1.9112 3.6044 -0.0010 6 6 3.3037 3.6790 -0.0064 7 6 3.9768 5.0000 -0.0131 8 6 4.9842 5.2765 0.9085 9 6 5.6123 6.5049 0.8953 10 6 5.2368 7.4715 -0.0255 11 9 5.8535 8.6736 -0.0281 12 6 4.2338 7.2098 -0.9416 13 6 3.5985 5.9769 -0.9419 14 8 2.6143 5.7183 -1.8392 15 6 2.2205 6.7391 -2.6268 16 1 2.7394 7.6854 -2.5840 17 6 1.1495 6.5743 -3.4915 18 7 0.5177 5.4215 -3.5438 19 14 0.6043 7.9886 -4.5833 20 1 1.4724 9.1678 -4.3363 21 1 0.7118 7.5839 -6.0080 22 1 -0.8052 8.3384 -4.2731 23 6 4.0615 2.5089 -0.0064 24 6 3.4322 1.2816 -0.0017 25 6 4.2506 0.0161 -0.0023 26 8 5.6406 0.3478 -0.0075 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 0.2099 2.3159 0.0089 31 1 1.3214 4.5091 -0.0010 32 1 5.2762 4.5281 1.6303 33 1 6.3958 6.7162 1.6078 34 1 3.9454 7.9658 -1.6569 35 1 -0.2315 5.3060 -4.1491 36 1 5.1402 2.5634 -0.0110 37 1 4.0199 -0.5662 0.8898 38 1 4.0131 -0.5697 -0.8902 39 1 6.2282 -0.4202 -0.0086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241928412.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:14 Heat of formation + Delta-G solvation = -109.648564 kcal Electronic energy + Delta-G solvation = -26102.004638 eV Core-core repulsion = 22083.318138 eV Total energy + Delta-G solvation = -4018.686500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.29197 -40.01010 -39.06811 -37.35439 -36.55207 -35.95850 -32.42824 -31.73027 -30.91609 -29.31206 -28.11491 -26.92242 -25.62509 -25.42948 -22.60769 -21.91569 -21.16653 -20.20086 -18.29625 -17.79946 -17.43559 -17.16993 -15.93960 -15.66175 -15.60577 -15.25934 -15.19418 -14.98762 -14.60457 -14.27332 -14.11618 -13.81910 -13.65896 -13.35207 -13.24562 -13.15721 -12.69898 -12.36016 -12.08016 -11.80741 -11.75643 -11.51013 -11.30595 -10.95853 -10.81585 -10.69304 -10.57615 -10.47806 -10.33963 -10.14820 -9.60501 -8.95539 -8.38140 -8.23345 -7.72350 -7.07652 -6.56698 -4.15245 1.52005 1.86610 2.14856 2.20904 3.06579 3.08921 3.14191 3.49685 3.87096 4.12893 4.29103 4.42422 4.86561 4.97873 5.12804 5.16248 5.19277 5.27843 5.33787 5.38403 5.50477 5.56101 5.60568 5.64166 5.73611 5.76811 6.01963 6.06299 6.20428 6.41617 6.50688 6.56126 6.79717 6.83916 6.92588 6.95905 7.01975 7.14994 7.25833 7.34527 7.63570 7.70017 7.72451 7.86909 8.87949 9.53237 10.59200 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.009588 B = 0.005185 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.668692 B = 5398.998088 C = 7712.943864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.323 6.323 3 C 0.118 3.882 4 C -0.200 4.200 5 C -0.036 4.036 6 C -0.051 4.051 7 C -0.132 4.132 8 C -0.035 4.035 9 C -0.247 4.247 10 C 0.142 3.858 11 F -0.152 7.152 12 C -0.271 4.271 13 C 0.184 3.816 14 O -0.154 6.154 15 C -0.396 4.396 16 H 0.094 0.906 17 C 0.045 3.955 18 N -0.851 5.851 19 Si 0.940 3.060 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.054 4.054 24 C -0.134 4.134 25 C 0.135 3.865 26 O -0.569 6.569 27 H 0.094 0.906 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.140 0.860 35 H 0.271 0.729 36 H 0.135 0.865 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 -8.861 7.337 11.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.237 6.237 3 C 0.074 3.926 4 C -0.218 4.218 5 C -0.054 4.054 6 C -0.051 4.051 7 C -0.134 4.134 8 C -0.054 4.054 9 C -0.266 4.266 10 C 0.122 3.878 11 F -0.131 7.131 12 C -0.291 4.291 13 C 0.128 3.872 14 O -0.056 6.056 15 C -0.472 4.472 16 H 0.111 0.889 17 C -0.161 4.161 18 N -0.484 5.484 19 Si 0.765 3.235 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.072 4.072 24 C -0.135 4.135 25 C 0.058 3.942 26 O -0.374 6.374 27 H 0.112 0.888 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.158 0.842 35 H 0.081 0.919 36 H 0.153 0.847 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.058 -8.713 7.128 11.444 hybrid contribution -0.310 0.660 -0.743 1.041 sum 1.749 -8.053 6.384 10.424 Atomic orbital electron populations 1.22993 0.78762 1.03234 1.01656 1.85954 1.21141 1.27387 1.89258 1.18644 0.91010 0.84081 0.98910 1.21015 0.99625 0.91976 1.09228 1.21072 0.93829 0.97141 0.93400 1.18473 0.92659 0.91672 1.02273 1.17844 1.02350 0.93550 0.99621 1.20560 0.93156 0.95383 0.96253 1.20460 1.06978 0.95028 1.04176 1.17521 0.93009 0.80421 0.96801 1.91414 1.81751 1.43840 1.96062 1.20981 1.02557 1.00374 1.05199 1.18996 0.88855 0.90936 0.88399 1.84010 1.43893 1.37002 1.40679 1.21438 1.15102 0.92393 1.18279 0.88865 1.25284 0.95199 0.98169 0.97468 1.70061 1.19902 1.22900 1.35566 0.85651 0.78905 0.79723 0.79250 1.18970 1.20040 1.20041 1.20817 1.00063 0.89640 0.96694 1.18737 0.89741 0.95167 1.09835 1.20568 0.80176 0.93643 0.99848 1.86475 1.16476 1.36661 1.97784 0.88779 0.92843 0.92429 0.85665 0.85306 0.85721 0.86180 0.84235 0.91945 0.84700 0.92863 0.92752 0.77597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.78 9.91 -19.37 -0.19 -4.97 16 3 C 0.12 2.02 6.66 -39.14 -0.26 1.76 16 4 C -0.20 -3.60 9.02 -39.48 -0.36 -3.96 16 5 C -0.04 -0.74 8.77 -39.26 -0.34 -1.09 16 6 C -0.05 -1.03 5.28 -104.89 -0.55 -1.58 16 7 C -0.13 -2.76 5.49 -104.72 -0.57 -3.34 16 8 C -0.04 -0.63 9.51 -39.28 -0.37 -1.01 16 9 C -0.25 -4.41 10.01 -39.52 -0.40 -4.80 16 10 C 0.14 2.82 7.29 -39.38 -0.29 2.53 16 11 F -0.15 -2.91 17.26 2.25 0.04 -2.87 16 12 C -0.27 -5.99 9.14 -39.37 -0.36 -6.35 16 13 C 0.18 4.34 6.55 -38.75 -0.25 4.09 16 14 O -0.15 -4.15 8.10 0.36 0.00 -4.15 16 15 C -0.40 -10.62 9.49 30.88 0.29 -10.32 16 16 H 0.09 2.36 5.21 -52.49 -0.27 2.08 16 17 C 0.04 1.17 5.49 -17.52 -0.10 1.08 16 18 N -0.85 -23.63 13.67 55.48 0.76 -22.87 16 19 Si 0.94 19.94 29.55 -169.99 -5.02 14.92 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 C -0.05 -1.00 8.84 -39.26 -0.35 -1.35 16 24 C -0.13 -2.30 5.89 -104.52 -0.62 -2.91 16 25 C 0.13 1.83 6.90 36.01 0.25 2.08 16 26 O -0.57 -7.26 12.13 -35.23 -0.43 -7.69 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.54 7.64 -51.93 -0.40 0.15 16 29 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 30 H 0.13 1.99 6.28 -52.49 -0.33 1.66 16 31 H 0.13 2.81 7.68 -52.49 -0.40 2.41 16 32 H 0.12 1.89 8.04 -52.49 -0.42 1.47 16 33 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.14 3.10 5.64 -52.49 -0.30 2.81 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.14 2.41 6.98 -52.48 -0.37 2.04 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.38 2.75 9.12 45.56 0.42 3.16 16 LS Contribution 341.13 15.07 5.14 5.14 Total: -1.00 -30.91 341.13 -6.28 -37.19 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -3.30 Total: 9.16 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -3.29 Total: -23.86 kcal Atomic # 7 Polarization: -23.63 SS G_CDS: 0.76 Total: -22.87 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.62 Total: -16.81 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.91 -6.28 -37.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241928412.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.460 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds