Wall clock time and date at job start Tue Mar 31 2020 12:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35882 * 117.00486 * 2 1 4 4 C 1.38858 * 119.92717 * 0.22739 * 3 2 1 5 5 C 1.37884 * 120.07312 * 180.27797 * 4 3 2 6 6 C 1.39452 * 119.92566 * 359.74928 * 5 4 3 7 7 C 1.48257 * 120.06955 * 179.97438 * 6 5 4 8 8 C 1.39307 * 120.14100 * 129.75094 * 7 6 5 9 9 C 1.37973 * 119.97336 * 179.72058 * 8 7 6 10 10 C 1.38679 * 120.24190 * 0.55354 * 9 8 7 11 11 F 1.35101 * 119.85923 * 179.74545 * 10 9 8 12 12 C 1.38337 * 120.27387 * 359.71758 * 10 9 8 13 13 C 1.38702 * 120.03013 * 0.02562 * 12 10 9 14 14 O 1.35661 * 120.12531 * 179.97438 * 13 12 10 15 15 C 1.34818 * 116.99906 * 354.39600 * 14 13 12 16 16 H 1.08001 * 119.99636 * 5.06162 * 15 14 13 17 17 C 1.38636 * 120.00321 * 185.06664 * 15 14 13 18 18 N 1.31569 * 119.99782 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00282 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47052 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47154 * 119.99576 * 19 17 15 22 22 H 1.48497 * 109.46989 * 239.99471 * 19 17 15 23 23 C 1.39405 * 119.86065 * 0.02562 * 6 5 4 24 24 C 1.37931 * 119.92739 * 0.02562 * 23 6 5 25 25 C 1.50704 * 119.96520 * 179.97438 * 24 23 6 26 26 O 1.42906 * 109.46964 * 0.02562 * 25 24 23 27 27 H 1.08997 * 109.47700 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47106 * 300.00246 * 1 2 3 29 29 H 1.08995 * 109.47280 * 59.99867 * 1 2 3 30 30 H 1.07997 * 119.96688 * 0.02562 * 4 3 2 31 31 H 1.07997 * 120.03833 * 179.77271 * 5 4 3 32 32 H 1.08002 * 120.00985 * 359.97275 * 8 7 6 33 33 H 1.07994 * 119.88197 * 180.25408 * 9 8 7 34 34 H 1.07999 * 119.98591 * 180.02562 * 12 10 9 35 35 H 0.97004 * 120.00008 * 180.02562 * 18 17 15 36 36 H 1.08004 * 120.03782 * 179.97438 * 23 6 5 37 37 H 1.09002 * 109.46871 * 119.99105 * 25 24 23 38 38 H 1.08990 * 109.46849 * 240.00054 * 25 24 23 39 39 H 0.96700 * 113.99942 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2883 2.3743 0.0048 5 6 1.9112 3.6044 -0.0010 6 6 3.3037 3.6790 -0.0064 7 6 3.9768 5.0000 -0.0131 8 6 4.9842 5.2765 0.9085 9 6 5.6123 6.5049 0.8953 10 6 5.2368 7.4715 -0.0255 11 9 5.8535 8.6736 -0.0281 12 6 4.2338 7.2098 -0.9416 13 6 3.5985 5.9769 -0.9419 14 8 2.6143 5.7183 -1.8392 15 6 2.2205 6.7391 -2.6268 16 1 2.7394 7.6854 -2.5840 17 6 1.1495 6.5743 -3.4915 18 7 0.5177 5.4215 -3.5438 19 14 0.6043 7.9886 -4.5833 20 1 1.4724 9.1678 -4.3363 21 1 0.7118 7.5839 -6.0080 22 1 -0.8052 8.3384 -4.2731 23 6 4.0615 2.5089 -0.0064 24 6 3.4322 1.2816 -0.0017 25 6 4.2506 0.0161 -0.0023 26 8 5.6406 0.3478 -0.0075 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 0.2099 2.3159 0.0089 31 1 1.3214 4.5091 -0.0010 32 1 5.2762 4.5281 1.6303 33 1 6.3958 6.7162 1.6078 34 1 3.9454 7.9658 -1.6569 35 1 -0.2315 5.3060 -4.1491 36 1 5.1402 2.5634 -0.0110 37 1 4.0199 -0.5662 0.8898 38 1 4.0131 -0.5697 -0.8902 39 1 6.2282 -0.4202 -0.0086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241928412.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:13 Heat of formation + Delta-G solvation = -129.482858 kcal Electronic energy + Delta-G solvation = -26102.864717 eV Core-core repulsion = 22083.318138 eV Total energy + Delta-G solvation = -4019.546580 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.86813 -41.40235 -40.65866 -38.65921 -37.97935 -37.26546 -34.34021 -33.12003 -32.35570 -30.95542 -29.50675 -28.05368 -27.37036 -26.82080 -24.11335 -23.54716 -22.56618 -21.66523 -20.09594 -19.18992 -19.01701 -18.25778 -17.41734 -17.07719 -16.97181 -16.77115 -16.65853 -16.50867 -15.96829 -15.59103 -15.52680 -15.42732 -15.17197 -15.02474 -14.68484 -14.52906 -14.19356 -13.94334 -13.53957 -13.31038 -12.97732 -12.88530 -12.77500 -12.47767 -12.35954 -12.17911 -12.11966 -11.85672 -11.72721 -11.42630 -11.15552 -10.84374 -9.89339 -9.68051 -9.31681 -8.62393 -8.50047 -6.17643 -0.02836 0.42995 0.52283 0.69728 1.33670 1.40107 1.50186 2.13147 2.36079 2.58155 2.83660 3.07673 3.23310 3.31228 3.47749 3.80489 3.90517 3.99700 4.07030 4.19999 4.26986 4.39925 4.42852 4.46781 4.50094 4.57039 4.64254 4.73770 4.80511 4.87239 5.02143 5.03708 5.15580 5.26013 5.33305 5.41250 5.47744 5.50359 5.78111 5.84072 5.96591 6.04751 6.41392 6.93106 7.01413 7.67924 8.70012 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.009588 B = 0.005185 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.668692 B = 5398.998088 C = 7712.943864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.322 6.322 3 C 0.124 3.876 4 C -0.206 4.206 5 C -0.059 4.059 6 C -0.073 4.073 7 C -0.135 4.135 8 C -0.027 4.027 9 C -0.218 4.218 10 C 0.134 3.866 11 F -0.146 7.146 12 C -0.284 4.284 13 C 0.154 3.846 14 O -0.195 6.195 15 C -0.420 4.420 16 H 0.096 0.904 17 C -0.009 4.009 18 N -0.901 5.901 19 Si 1.011 2.989 20 H -0.257 1.257 21 H -0.268 1.268 22 H -0.267 1.267 23 C -0.056 4.056 24 C -0.140 4.140 25 C 0.141 3.859 26 O -0.584 6.584 27 H 0.130 0.870 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.139 0.861 31 H 0.098 0.902 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.128 0.872 35 H 0.273 0.727 36 H 0.144 0.856 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.102 -10.140 8.785 14.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.236 6.236 3 C 0.078 3.922 4 C -0.225 4.225 5 C -0.078 4.078 6 C -0.073 4.073 7 C -0.137 4.137 8 C -0.045 4.045 9 C -0.237 4.237 10 C 0.115 3.885 11 F -0.125 7.125 12 C -0.305 4.305 13 C 0.101 3.899 14 O -0.099 6.099 15 C -0.496 4.496 16 H 0.114 0.886 17 C -0.209 4.209 18 N -0.537 5.537 19 Si 0.831 3.169 20 H -0.181 1.181 21 H -0.193 1.193 22 H -0.191 1.191 23 C -0.074 4.074 24 C -0.141 4.141 25 C 0.063 3.937 26 O -0.393 6.393 27 H 0.148 0.852 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.157 0.843 31 H 0.116 0.884 32 H 0.180 0.820 33 H 0.180 0.820 34 H 0.145 0.855 35 H 0.082 0.918 36 H 0.161 0.839 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 3.650 -10.002 8.613 13.695 hybrid contribution -0.623 0.933 -0.966 1.481 sum 3.027 -9.069 7.647 12.242 Atomic orbital electron populations 1.23320 0.76770 1.05660 1.01780 1.85963 1.23100 1.25807 1.88703 1.18703 0.91342 0.84474 0.97642 1.21165 1.00573 0.91706 1.09045 1.20932 0.94180 0.97017 0.95648 1.18567 0.92687 0.92180 1.03856 1.18249 1.02723 0.93454 0.99254 1.20998 0.91597 0.96281 0.95608 1.20952 1.06219 0.93659 1.02835 1.17606 0.92729 0.81253 0.96929 1.91428 1.81434 1.43564 1.96024 1.21014 1.03614 0.99848 1.05977 1.19496 0.88886 0.92383 0.89122 1.84003 1.45966 1.37478 1.42487 1.21810 1.15875 0.92879 1.19025 0.88626 1.26404 0.94907 1.00912 0.98674 1.70187 1.21059 1.25216 1.37261 0.84625 0.78650 0.76432 0.77147 1.18081 1.19341 1.19145 1.20883 1.00294 0.89496 0.96679 1.19220 0.90380 0.96353 1.08129 1.20532 0.80309 0.91629 1.01189 1.86406 1.16355 1.38733 1.97824 0.85230 0.91832 0.93229 0.84349 0.88366 0.81956 0.81992 0.85469 0.91781 0.83868 0.90691 0.91933 0.74750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.32 -8.88 9.91 -92.22 -0.91 -9.79 16 3 C 0.12 4.13 6.66 22.56 0.15 4.28 16 4 C -0.21 -7.64 9.02 22.33 0.20 -7.44 16 5 C -0.06 -2.57 8.77 22.48 0.20 -2.37 16 6 C -0.07 -3.02 5.28 -20.04 -0.11 -3.12 16 7 C -0.14 -5.74 5.49 -19.93 -0.11 -5.85 16 8 C -0.03 -0.91 9.51 22.46 0.21 -0.69 16 9 C -0.22 -7.07 10.01 22.31 0.22 -6.84 16 10 C 0.13 5.18 7.29 22.40 0.16 5.35 16 11 F -0.15 -5.34 17.26 44.97 0.78 -4.57 16 12 C -0.28 -12.96 9.14 22.40 0.20 -12.76 16 13 C 0.15 7.61 6.55 22.81 0.15 7.76 16 14 O -0.19 -11.24 8.10 -21.63 -0.18 -11.42 16 15 C -0.42 -23.95 9.49 67.91 0.64 -23.30 16 16 H 0.10 5.15 5.21 -2.91 -0.02 5.14 16 17 C -0.01 -0.50 5.49 84.83 0.47 -0.04 16 18 N -0.90 -52.95 13.67 21.61 0.30 -52.66 16 19 Si 1.01 42.40 29.55 68.60 2.03 44.43 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 22 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 23 C -0.06 -2.02 8.84 22.48 0.20 -1.82 16 24 C -0.14 -4.61 5.89 -19.80 -0.12 -4.72 16 25 C 0.14 3.42 6.90 71.24 0.49 3.91 16 26 O -0.58 -13.13 12.13 -148.98 -1.81 -14.94 16 27 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 1.18 7.64 -2.38 -0.02 1.16 16 29 H 0.05 1.11 7.66 -2.39 -0.02 1.09 16 30 H 0.14 4.55 6.28 -2.91 -0.02 4.53 16 31 H 0.10 4.74 7.68 -2.91 -0.02 4.72 16 32 H 0.16 4.27 8.04 -2.91 -0.02 4.24 16 33 H 0.16 4.00 8.06 -2.91 -0.02 3.97 16 34 H 0.13 5.99 5.64 -2.91 -0.02 5.97 16 35 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 36 H 0.14 4.86 6.98 -2.91 -0.02 4.84 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.40 4.47 9.12 -74.06 -0.68 3.79 16 Total: -1.00 -71.40 341.13 4.73 -66.67 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.44 Total: 28.43 kcal Atomic # 6 Polarization: -50.24 SS G_CDS: 4.08 Total: -46.16 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.30 Total: -52.66 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -2.90 Total: -36.14 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.78 Total: -4.57 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -71.40 4.73 -66.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241928412.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.813 kcal (2) G-P(sol) polarization free energy of solvation -71.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds