Wall clock time and date at job start Tue Mar 31 2020 12:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35852 * 117.00009 * 2 1 4 4 C 1.38550 * 120.12177 * 0.23374 * 3 2 1 5 5 C 1.38212 * 120.07340 * 180.25082 * 4 3 2 6 6 C 1.38393 * 120.30834 * 359.74516 * 5 4 3 7 7 C 1.50706 * 119.87649 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.47120 * 270.02334 * 7 6 5 9 9 C 1.37999 * 120.24316 * 0.02562 * 6 5 4 10 10 C 1.39353 * 119.92625 * 359.97015 * 9 6 5 11 11 C 1.48227 * 120.15605 * 179.97438 * 10 9 6 12 12 C 1.39322 * 120.13599 * 65.00330 * 11 10 9 13 13 C 1.37979 * 119.96470 * 180.27649 * 12 11 10 14 14 C 1.38675 * 120.24797 * 359.47324 * 13 12 11 15 15 F 1.35095 * 119.86342 * 180.25656 * 14 13 12 16 16 C 1.38343 * 120.27380 * 0.55100 * 14 13 12 17 17 C 1.38697 * 120.03051 * 359.70306 * 16 14 13 18 18 O 1.35668 * 120.12404 * 180.02562 * 17 16 14 19 19 C 1.34818 * 116.99791 * 354.40391 * 18 17 16 20 20 H 1.07994 * 119.99948 * 5.06155 * 19 18 17 21 21 C 1.38643 * 119.99745 * 185.06854 * 19 18 17 22 22 N 1.31565 * 120.00051 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99545 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47644 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47448 * 119.99777 * 23 21 19 26 26 H 1.48509 * 109.46996 * 239.99213 * 23 21 19 27 27 H 1.08993 * 109.47123 * 299.99518 * 1 2 3 28 28 H 1.08996 * 109.47315 * 60.00179 * 1 2 3 29 29 H 1.09004 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.96158 * 359.97438 * 4 3 2 31 31 H 1.07994 * 119.84729 * 179.71835 * 5 4 3 32 32 H 1.08995 * 109.47092 * 30.02402 * 7 6 5 33 33 H 1.09004 * 109.46598 * 150.02876 * 7 6 5 34 34 H 0.96703 * 113.99673 * 179.97438 * 8 7 6 35 35 H 1.08001 * 120.03781 * 179.97438 * 9 6 5 36 36 H 1.07992 * 120.01255 * 359.97438 * 12 11 10 37 37 H 1.08001 * 119.87017 * 179.74561 * 13 12 11 38 38 H 1.07999 * 119.98152 * 179.72750 * 16 14 13 39 39 H 0.96999 * 119.99530 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 1.2936 2.3740 0.0049 5 6 1.9221 3.6050 -0.0004 6 6 3.3038 3.6837 -0.0052 7 6 3.9790 5.0310 -0.0115 8 8 4.1874 5.4531 -1.3607 9 6 4.0655 2.5330 -0.0053 10 6 3.4422 1.2866 0.0000 11 6 4.2555 0.0474 -0.0007 12 6 5.0695 -0.2557 1.0886 13 6 5.8294 -1.4074 1.0818 14 6 5.7783 -2.2716 -0.0016 15 9 6.5216 -3.3996 0.0022 16 6 4.9738 -1.9804 -1.0887 17 6 4.2092 -0.8232 -1.0962 18 8 3.4192 -0.5360 -2.1611 19 6 3.5095 -1.3546 -3.2286 20 1 4.1266 -2.2395 -3.1798 21 6 2.8102 -1.0601 -4.3890 22 7 2.0582 0.0178 -4.4483 23 14 2.9348 -2.1947 -5.8677 24 1 3.8375 -3.3292 -5.5466 25 1 1.5862 -2.7154 -6.2071 26 1 3.4801 -1.4410 -7.0253 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2150 2.3191 0.0083 31 1 1.3323 4.5096 -0.0011 32 1 3.3480 5.7560 0.5027 33 1 4.9393 4.9585 0.4990 34 1 4.6186 6.3149 -1.4410 35 1 5.1436 2.5983 -0.0095 36 1 5.1094 0.4129 1.9357 37 1 6.4630 -1.6387 1.9252 38 1 4.9409 -2.6546 -1.9318 39 1 1.5687 0.2235 -5.2600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243172124.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:01 Heat of formation + Delta-G solvation = -104.680893 kcal Electronic energy + Delta-G solvation = -26620.764042 eV Core-core repulsion = 22602.292956 eV Total energy + Delta-G solvation = -4018.471086 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -48.24517 -39.92212 -38.68873 -37.55744 -36.36500 -35.81991 -32.36984 -31.96072 -30.50010 -29.33150 -28.06666 -27.15843 -25.39358 -24.95587 -22.93495 -21.76530 -21.16918 -20.15833 -18.20775 -17.70750 -17.32417 -17.23419 -16.00740 -15.76409 -15.36704 -15.16725 -15.01029 -14.92761 -14.37647 -14.23188 -14.20560 -13.77725 -13.50429 -13.27903 -13.11620 -12.91743 -12.67578 -12.45345 -12.00166 -11.85227 -11.58231 -11.37240 -11.23224 -10.96860 -10.70170 -10.64133 -10.51152 -10.43308 -10.38189 -9.94394 -9.52362 -8.88100 -8.51880 -8.02580 -7.62480 -7.16082 -6.48420 -4.06329 1.61064 1.82780 2.08921 2.24175 3.10673 3.13081 3.18251 3.80868 3.93367 4.05480 4.37562 4.75664 4.92480 5.04446 5.05863 5.21630 5.23154 5.25919 5.34930 5.47746 5.51107 5.58662 5.62910 5.70855 5.79741 5.85616 5.92125 6.08992 6.17720 6.35427 6.50875 6.61901 6.71735 6.85863 6.92134 6.98215 7.01967 7.11600 7.26264 7.33437 7.70523 7.74247 7.93651 7.97759 8.95794 9.64166 10.67651 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.008852 B = 0.005889 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3162.404485 B = 4753.462351 C = 6130.640731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.292 6.292 3 C 0.168 3.832 4 C -0.214 4.214 5 C -0.065 4.065 6 C -0.143 4.143 7 C 0.127 3.873 8 O -0.565 6.565 9 C -0.050 4.050 10 C -0.046 4.046 11 C -0.129 4.129 12 C -0.035 4.035 13 C -0.252 4.252 14 C 0.143 3.857 15 F -0.153 7.153 16 C -0.274 4.274 17 C 0.196 3.804 18 O -0.146 6.146 19 C -0.394 4.394 20 H 0.093 0.907 21 C 0.044 3.956 22 N -0.849 5.849 23 Si 0.938 3.062 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.275 1.275 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.117 0.883 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.373 0.627 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.139 0.861 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.040 6.572 9.837 11.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.204 6.204 3 C 0.121 3.879 4 C -0.233 4.233 5 C -0.083 4.083 6 C -0.144 4.144 7 C 0.050 3.950 8 O -0.369 6.369 9 C -0.068 4.068 10 C -0.047 4.047 11 C -0.131 4.131 12 C -0.053 4.053 13 C -0.271 4.271 14 C 0.124 3.876 15 F -0.132 7.132 16 C -0.294 4.294 17 C 0.139 3.861 18 O -0.047 6.047 19 C -0.470 4.470 20 H 0.110 0.890 21 C -0.161 4.161 22 N -0.483 5.483 23 Si 0.763 3.237 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.201 1.201 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.143 0.857 31 H 0.135 0.865 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.219 0.781 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.157 0.843 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.492 6.046 9.469 11.245 hybrid contribution 0.151 -0.231 -0.783 0.830 sum -0.341 5.815 8.686 10.459 Atomic orbital electron populations 1.22974 0.79324 1.03518 1.00611 1.86195 1.20437 1.26337 1.87420 1.19052 0.91559 0.84234 0.93007 1.21034 0.99676 0.92210 1.10385 1.20648 0.93607 0.96663 0.97369 1.19246 0.93506 0.93750 1.07850 1.20860 0.97977 0.92719 0.83456 1.86700 1.83273 1.40352 1.26621 1.20839 0.99319 0.90079 0.96582 1.17776 0.89291 0.92685 1.04906 1.17623 1.04316 0.95835 0.95278 1.20482 0.93640 0.95320 0.95891 1.20395 1.08701 0.98305 0.99724 1.17508 0.91929 0.82786 0.95424 1.91405 1.75049 1.49803 1.96909 1.20969 1.05509 1.02049 1.00884 1.18950 0.88035 0.90605 0.88503 1.84025 1.50946 1.49394 1.20331 1.21427 1.30566 1.05440 0.89593 0.88989 1.25276 0.95680 0.97095 0.98077 1.70075 1.26311 1.23746 1.28134 0.85682 0.78541 0.79331 0.80139 1.18985 1.20101 1.20051 0.93530 0.92526 0.88758 0.85748 0.86480 0.93402 0.93203 0.78140 0.85710 0.85993 0.86314 0.84345 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.81 101.05 0.99 1.48 16 2 O -0.29 -6.10 9.46 -19.28 -0.18 -6.28 16 3 C 0.17 3.43 6.37 -38.86 -0.25 3.18 16 4 C -0.21 -3.76 9.03 -39.48 -0.36 -4.12 16 5 C -0.06 -1.05 9.68 -39.53 -0.38 -1.43 16 6 C -0.14 -2.37 5.51 -104.65 -0.58 -2.94 16 7 C 0.13 1.63 7.16 36.01 0.26 1.88 16 8 O -0.56 -8.02 13.64 -35.23 -0.48 -8.51 16 9 C -0.05 -0.91 9.38 -39.25 -0.37 -1.28 16 10 C -0.05 -0.95 4.96 -104.77 -0.52 -1.47 16 11 C -0.13 -2.78 4.96 -104.73 -0.52 -3.30 16 12 C -0.03 -0.64 9.73 -39.27 -0.38 -1.02 16 13 C -0.25 -4.59 10.01 -39.52 -0.40 -4.98 16 14 C 0.14 2.92 7.29 -39.38 -0.29 2.63 16 15 F -0.15 -2.99 17.26 2.25 0.04 -2.95 16 16 C -0.27 -6.28 9.14 -39.37 -0.36 -6.64 16 17 C 0.20 4.81 6.33 -38.75 -0.25 4.56 16 18 O -0.15 -4.12 8.72 0.34 0.00 -4.12 16 19 C -0.39 -10.99 9.49 30.88 0.29 -10.69 16 20 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 21 C 0.04 1.21 5.49 -17.52 -0.10 1.12 16 22 N -0.85 -24.58 13.67 55.48 0.76 -23.82 16 23 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 27 H 0.05 0.59 7.65 -51.93 -0.40 0.19 16 28 H 0.06 0.91 7.67 -51.93 -0.40 0.51 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.12 1.87 6.30 -52.49 -0.33 1.54 16 31 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.05 0.54 8.08 -51.93 -0.42 0.12 16 34 H 0.37 3.11 9.12 45.56 0.42 3.53 16 35 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 36 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.14 3.20 5.64 -52.49 -0.30 2.90 16 39 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -33.60 344.39 -6.26 -39.86 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -3.37 Total: 8.08 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -3.19 Total: -23.02 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.76 Total: -23.82 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.66 Total: -18.90 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.60 -6.26 -39.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243172124.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.821 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds