Wall clock time and date at job start Tue Mar 31 2020 12:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35883 * 117.00062 * 2 1 4 4 C 1.38849 * 119.93070 * 359.97438 * 3 2 1 5 5 C 1.37881 * 120.07322 * 180.29668 * 4 3 2 6 6 C 1.39461 * 119.92622 * 359.43856 * 5 4 3 7 7 C 1.48255 * 120.07109 * 180.29330 * 6 5 4 8 8 C 1.39301 * 120.13660 * 65.27093 * 7 6 5 9 9 C 1.37978 * 119.96613 * 179.97438 * 8 7 6 10 10 C 1.38668 * 120.24957 * 0.02562 * 9 8 7 11 11 F 1.35102 * 119.86532 * 179.97438 * 10 9 8 12 12 C 1.38340 * 120.27459 * 0.02562 * 10 9 8 13 13 C 1.38714 * 120.02547 * 359.70076 * 12 10 9 14 14 O 1.35658 * 120.12598 * 180.27363 * 13 12 10 15 15 C 1.34821 * 117.00063 * 354.39824 * 14 13 12 16 16 H 1.08006 * 119.99450 * 5.05823 * 15 14 13 17 17 C 1.38636 * 120.00344 * 185.06848 * 15 14 13 18 18 N 1.31568 * 119.99921 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00092 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47635 * 59.99234 * 19 17 15 21 21 H 1.48502 * 109.47186 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47247 * 299.99259 * 19 17 15 23 23 C 1.39409 * 119.85411 * 0.56174 * 6 5 4 24 24 C 1.50703 * 120.03574 * 179.74878 * 23 6 5 25 25 O 1.42900 * 109.47157 * 179.97438 * 24 23 6 26 26 C 1.37923 * 119.93212 * 359.73251 * 23 6 5 27 27 H 1.09006 * 109.46468 * 60.00414 * 1 2 3 28 28 H 1.08996 * 109.47427 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47154 * 300.00456 * 1 2 3 30 30 H 1.08000 * 119.96310 * 0.03198 * 4 3 2 31 31 H 1.08001 * 120.03837 * 179.72395 * 5 4 3 32 32 H 1.07997 * 120.01715 * 0.02562 * 8 7 6 33 33 H 1.08006 * 119.87324 * 180.02562 * 9 8 7 34 34 H 1.07997 * 119.98816 * 179.97438 * 12 10 9 35 35 H 0.96993 * 120.00052 * 180.02562 * 18 17 15 36 36 H 1.08997 * 109.47301 * 299.98471 * 24 23 6 37 37 H 1.08998 * 109.46550 * 59.98374 * 24 23 6 38 38 H 0.96701 * 113.99958 * 180.02562 * 25 24 23 39 39 H 1.07997 * 119.96997 * 179.97438 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2883 2.3743 -0.0005 5 6 1.9113 3.6044 -0.0067 6 6 3.3039 3.6791 -0.0006 7 6 3.9769 5.0000 -0.0006 8 6 3.8405 5.8545 1.0910 9 6 4.4689 7.0829 1.0875 10 6 5.2366 7.4717 0.0001 11 9 5.8481 8.6764 0.0046 12 6 5.3781 6.6315 -1.0898 13 6 4.7560 5.3917 -1.0959 14 8 4.8980 4.5639 -2.1612 15 6 5.5597 5.0503 -3.2304 16 1 6.0194 6.0265 -3.1827 17 6 5.6500 4.2976 -4.3911 18 7 5.0904 3.1083 -4.4491 19 14 6.5675 4.9713 -5.8722 20 1 7.9820 5.2312 -5.5022 21 1 6.5194 3.9802 -6.9771 22 1 5.9309 6.2379 -6.3148 23 6 4.0616 2.5089 -0.0001 24 6 5.5667 2.5848 0.0008 25 8 6.1103 1.2633 0.0018 26 6 3.4324 1.2815 -0.0001 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2099 2.3158 -0.0004 31 1 1.3214 4.5091 -0.0116 32 1 3.2438 5.5554 1.9400 33 1 4.3624 7.7441 1.9348 34 1 5.9768 6.9392 -1.9343 35 1 5.1538 2.5815 -5.2610 36 1 5.9042 3.1160 -0.8891 37 1 5.9030 3.1166 0.8908 38 1 7.0770 1.2356 0.0028 39 1 4.0188 0.3746 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243248495.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:16 Heat of formation + Delta-G solvation = -127.222521 kcal Electronic energy + Delta-G solvation = -26591.754638 eV Core-core repulsion = 22572.306073 eV Total energy + Delta-G solvation = -4019.448564 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.84777 -41.43097 -40.56785 -38.84849 -37.99719 -37.14281 -34.32319 -32.92063 -32.42344 -30.98652 -29.67351 -27.94301 -27.32454 -26.76888 -24.23964 -23.41708 -22.63194 -21.60565 -20.07517 -19.23668 -18.83881 -18.33592 -17.49990 -17.08464 -16.93723 -16.71810 -16.59630 -16.53455 -15.96757 -15.92396 -15.48170 -15.35197 -15.17962 -14.98332 -14.63271 -14.50365 -14.07975 -13.93722 -13.51484 -13.28993 -13.11733 -12.90648 -12.66924 -12.40574 -12.30784 -12.17240 -12.14327 -11.85639 -11.71307 -11.45719 -11.14378 -10.80664 -9.75614 -9.67812 -9.24241 -8.74795 -8.47060 -6.15828 0.08670 0.44277 0.54221 0.61679 1.34552 1.43074 1.48832 2.14094 2.41325 2.62561 2.81311 3.06478 3.25868 3.29965 3.49758 3.82606 3.92503 3.98448 4.03527 4.23240 4.35307 4.37304 4.42851 4.43841 4.47533 4.62100 4.71120 4.73129 4.76968 4.89473 5.03525 5.11415 5.16420 5.29514 5.32872 5.41552 5.49411 5.53866 5.76419 5.81889 5.96754 6.06606 6.51893 6.84091 6.95812 7.70344 8.71779 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.009540 B = 0.005671 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.171850 B = 4936.608482 C = 6700.043763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.114 3.886 4 C -0.206 4.206 5 C -0.071 4.071 6 C -0.066 4.066 7 C -0.136 4.136 8 C -0.023 4.023 9 C -0.219 4.219 10 C 0.135 3.865 11 F -0.147 7.147 12 C -0.285 4.285 13 C 0.158 3.842 14 O -0.190 6.190 15 C -0.419 4.419 16 H 0.098 0.902 17 C -0.008 4.008 18 N -0.900 5.900 19 Si 1.007 2.993 20 H -0.258 1.258 21 H -0.273 1.273 22 H -0.261 1.261 23 C -0.039 4.039 24 C 0.121 3.879 25 O -0.580 6.580 26 C -0.152 4.152 27 H 0.059 0.941 28 H 0.120 0.880 29 H 0.071 0.929 30 H 0.159 0.841 31 H 0.147 0.853 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.127 0.873 35 H 0.272 0.728 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.395 0.605 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.845 0.517 10.656 12.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.069 3.931 4 C -0.224 4.224 5 C -0.089 4.089 6 C -0.067 4.067 7 C -0.137 4.137 8 C -0.041 4.041 9 C -0.238 4.238 10 C 0.116 3.884 11 F -0.126 7.126 12 C -0.305 4.305 13 C 0.105 3.895 14 O -0.094 6.094 15 C -0.495 4.495 16 H 0.115 0.885 17 C -0.208 4.208 18 N -0.536 5.536 19 Si 0.827 3.173 20 H -0.183 1.183 21 H -0.198 1.198 22 H -0.185 1.185 23 C -0.039 4.039 24 C 0.044 3.956 25 O -0.388 6.388 26 C -0.171 4.171 27 H 0.077 0.923 28 H 0.138 0.862 29 H 0.090 0.910 30 H 0.177 0.823 31 H 0.165 0.835 32 H 0.182 0.818 33 H 0.178 0.822 34 H 0.145 0.855 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.245 0.755 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.470 -0.214 10.452 12.295 hybrid contribution 1.251 0.689 -1.240 1.891 sum -5.219 0.475 9.212 10.598 Atomic orbital electron populations 1.23361 0.76384 1.05572 1.02321 1.86025 1.23641 1.26734 1.88852 1.19093 0.91866 0.85055 0.97060 1.21352 1.01076 0.91210 1.08797 1.21175 0.92594 0.98202 0.96917 1.18273 0.93366 0.90747 1.04299 1.18109 1.04142 0.96328 0.95132 1.20985 0.96156 0.91015 0.95946 1.20943 1.03962 0.99575 0.99287 1.17630 0.94869 0.80453 0.95425 1.91432 1.81422 1.42853 1.96876 1.21027 1.10909 0.96986 1.01576 1.19473 0.92409 0.88801 0.88808 1.84035 1.66865 1.37234 1.21250 1.21697 1.33180 1.04345 0.90283 0.88480 1.26369 0.98010 0.95601 1.00822 1.70196 1.42762 1.11352 1.29310 0.84805 0.78560 0.78141 0.75782 1.18275 1.19806 1.18520 1.19624 0.94644 0.92372 0.97249 1.20859 0.90365 0.84004 1.00377 1.86350 1.27090 1.27559 1.97810 1.20090 0.91926 0.98179 1.06880 0.92279 0.86171 0.90996 0.82344 0.83502 0.81806 0.82163 0.85509 0.91922 0.92943 0.91363 0.75514 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.34 -10.65 10.49 -92.23 -0.97 -11.61 16 3 C 0.11 4.06 6.69 22.56 0.15 4.21 16 4 C -0.21 -6.35 9.02 22.33 0.20 -6.15 16 5 C -0.07 -2.36 9.73 22.48 0.22 -2.15 16 6 C -0.07 -2.59 4.95 -20.04 -0.10 -2.69 16 7 C -0.14 -5.23 4.68 -19.93 -0.09 -5.32 16 8 C -0.02 -0.69 9.73 22.46 0.22 -0.47 16 9 C -0.22 -6.42 10.01 22.31 0.22 -6.20 16 10 C 0.14 4.84 7.29 22.40 0.16 5.01 16 11 F -0.15 -5.06 17.26 44.97 0.78 -4.29 16 12 C -0.28 -12.08 9.14 22.41 0.20 -11.88 16 13 C 0.16 7.23 5.80 22.81 0.13 7.36 16 14 O -0.19 -10.38 7.15 -21.63 -0.15 -10.53 16 15 C -0.42 -23.04 9.49 67.91 0.64 -22.39 16 16 H 0.10 4.99 5.21 -2.91 -0.02 4.97 16 17 C -0.01 -0.42 5.49 84.83 0.47 0.04 16 18 N -0.90 -53.22 13.67 21.61 0.30 -52.93 16 19 Si 1.01 41.81 29.55 68.60 2.03 43.84 16 20 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 23 C -0.04 -1.61 5.68 -19.66 -0.11 -1.72 16 24 C 0.12 4.90 6.25 71.24 0.45 5.35 16 25 O -0.58 -21.56 12.14 -148.98 -1.81 -23.37 16 26 C -0.15 -6.20 9.31 22.33 0.21 -5.99 16 27 H 0.06 1.11 7.65 -2.38 -0.02 1.09 16 28 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 30 H 0.16 3.61 6.28 -2.91 -0.02 3.59 16 31 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 32 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 33 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 34 H 0.13 5.60 5.64 -2.91 -0.02 5.59 16 35 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 36 H 0.05 2.54 5.59 -2.39 -0.01 2.52 16 37 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.40 10.63 9.12 -74.06 -0.68 9.96 16 39 H 0.12 5.14 7.00 -2.91 -0.02 5.12 16 Total: -1.00 -70.99 337.57 4.70 -66.29 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.45 Total: 34.13 kcal Atomic # 6 Polarization: -45.62 SS G_CDS: 4.08 Total: -41.54 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.30 Total: -52.93 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -2.93 Total: -45.52 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.78 Total: -4.29 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -70.99 4.70 -66.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243248495.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.928 kcal (2) G-P(sol) polarization free energy of solvation -70.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds