Wall clock time and date at job start Tue Mar 31 2020 12:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35922 * 116.99856 * 2 1 4 4 C 1.38862 * 119.91457 * 359.97438 * 3 2 1 5 5 C 1.37905 * 120.20452 * 179.76548 * 4 3 2 6 6 C 1.39404 * 120.00850 * 0.51315 * 5 4 3 7 7 C 1.48243 * 120.09082 * 179.76653 * 6 5 4 8 8 C 1.39477 * 120.05620 * 235.73061 * 7 6 5 9 9 C 1.37834 * 119.94544 * 179.97438 * 8 7 6 10 10 C 1.38997 * 120.05315 * 359.97438 * 9 8 7 11 11 O 1.35708 * 119.94043 * 179.74594 * 10 9 8 12 12 C 1.34817 * 117.00226 * 354.43952 * 11 10 9 13 13 H 1.08001 * 119.99788 * 5.04872 * 12 11 10 14 14 C 1.38623 * 119.99969 * 185.04572 * 12 11 10 15 15 N 1.31571 * 120.00311 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99629 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47059 * 60.00102 * 16 14 12 18 18 H 1.48507 * 109.46893 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47166 * 299.99962 * 16 14 12 20 20 C 1.39000 * 120.11442 * 0.02562 * 10 9 8 21 21 C 1.37829 * 120.05886 * 359.97438 * 20 10 9 22 22 C 1.39847 * 119.81427 * 359.49159 * 6 5 4 23 23 O 1.35907 * 120.09629 * 180.23264 * 22 6 5 24 24 C 1.42899 * 116.99970 * 94.99882 * 23 22 6 25 25 C 1.38591 * 119.80491 * 0.24942 * 22 6 5 26 26 F 1.35098 * 120.00569 * 180.02562 * 25 22 6 27 27 H 1.09000 * 109.47388 * 59.99988 * 1 2 3 28 28 H 1.08996 * 109.47420 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47181 * 300.00095 * 1 2 3 30 30 H 1.08005 * 119.90002 * 0.04782 * 4 3 2 31 31 H 1.08003 * 119.99778 * 180.25448 * 5 4 3 32 32 H 1.08004 * 120.02799 * 0.02562 * 8 7 6 33 33 H 1.07994 * 119.97325 * 180.02562 * 9 8 7 34 34 H 0.97002 * 119.99681 * 180.02562 * 15 14 12 35 35 H 1.08002 * 119.96622 * 179.97438 * 20 10 9 36 36 H 1.08002 * 120.02858 * 180.02562 * 21 20 10 37 37 H 1.08996 * 109.47622 * 55.00625 * 24 23 22 38 38 H 1.09003 * 109.46736 * 175.01468 * 24 23 22 39 39 H 1.09002 * 109.46731 * 295.00694 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2880 2.3745 -0.0005 5 6 1.9078 3.6064 0.0043 6 6 3.2995 3.6867 -0.0010 7 6 3.9677 5.0100 -0.0010 8 6 4.8854 5.3292 -1.0016 9 6 5.5049 6.5605 -0.9997 10 6 5.2153 7.4839 -0.0020 11 8 5.8305 8.6936 0.0006 12 6 6.7933 8.8926 -0.9219 13 1 6.9876 8.1392 -1.6708 14 6 7.5338 10.0645 -0.9091 15 7 7.2974 10.9822 0.0036 16 14 8.8673 10.3405 -2.1877 17 1 8.2654 10.3112 -3.5450 18 1 9.5068 11.6611 -1.9588 19 1 9.8894 9.2690 -2.0763 20 6 4.3011 7.1683 0.9964 21 6 3.6789 5.9384 0.9990 22 6 4.0636 2.5154 -0.0005 23 8 5.4207 2.5870 -0.0009 24 6 6.0748 2.5111 1.2674 25 6 3.4327 1.2814 0.0000 26 9 4.1668 0.1473 0.0010 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2096 2.3145 -0.0002 31 1 1.3149 4.5092 0.0081 32 1 5.1098 4.6125 -1.7778 33 1 6.2153 6.8083 -1.7745 34 1 7.8153 11.8023 0.0122 35 1 4.0782 7.8874 1.7707 36 1 2.9683 5.6938 1.7747 37 1 5.7622 1.6036 1.7837 38 1 7.1544 2.4912 1.1187 39 1 5.8066 3.3810 1.8670 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591399.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:30 Heat of formation + Delta-G solvation = -89.445055 kcal Electronic energy + Delta-G solvation = -25730.911170 eV Core-core repulsion = 21713.100760 eV Total energy + Delta-G solvation = -4017.810410 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.77302 -40.35469 -39.22122 -38.64740 -36.87036 -35.98391 -32.42479 -31.08789 -30.46497 -30.09944 -28.38063 -26.97220 -26.68838 -25.37222 -22.90708 -22.51469 -21.72410 -20.64259 -18.70325 -18.05088 -17.40093 -17.39003 -16.75980 -16.44349 -16.33923 -15.51418 -15.19036 -14.87029 -14.76441 -14.56577 -14.43481 -14.28675 -13.73491 -13.66650 -13.12325 -12.98662 -12.74964 -12.69306 -12.41796 -12.24069 -11.81086 -11.74672 -11.44761 -11.41537 -11.11619 -10.91934 -10.76754 -10.67660 -10.48154 -9.97068 -9.39197 -8.92208 -8.75020 -8.29742 -8.23931 -7.12555 -6.51145 -4.08962 0.89802 1.04334 2.19408 2.26615 2.83931 3.11084 3.11907 3.14809 3.31199 3.88002 3.92712 4.13698 4.48587 4.61806 4.75350 4.85588 4.87972 5.04080 5.07125 5.16366 5.19641 5.24173 5.33968 5.44671 5.68567 5.70006 5.70760 5.76310 5.88406 6.00947 6.15262 6.20594 6.31030 6.44098 6.62642 6.86838 6.99836 7.04214 7.17793 7.32742 7.38445 7.49163 7.74593 7.94094 8.94376 9.62716 10.66280 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.025496 B = 0.002866 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.951479 B = 9766.198987 C =10290.371318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.090 3.910 4 C -0.184 4.184 5 C -0.075 4.075 6 C -0.029 4.029 7 C -0.160 4.160 8 C -0.033 4.033 9 C -0.237 4.237 10 C 0.161 3.839 11 O -0.173 6.173 12 C -0.392 4.392 13 H 0.094 0.906 14 C 0.040 3.960 15 N -0.860 5.860 16 Si 0.941 3.059 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.269 1.269 20 C -0.195 4.195 21 C -0.056 4.056 22 C 0.100 3.900 23 O -0.317 6.317 24 C 0.038 3.962 25 C 0.048 3.952 26 F -0.129 7.129 27 H 0.057 0.943 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.272 0.728 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.043 0.957 38 H 0.096 0.904 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.131 -17.444 1.309 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.044 3.956 4 C -0.203 4.203 5 C -0.093 4.093 6 C -0.029 4.029 7 C -0.161 4.161 8 C -0.051 4.051 9 C -0.256 4.256 10 C 0.106 3.894 11 O -0.075 6.075 12 C -0.468 4.468 13 H 0.111 0.889 14 C -0.164 4.164 15 N -0.495 5.495 16 Si 0.766 3.234 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.194 1.194 20 C -0.215 4.215 21 C -0.074 4.074 22 C 0.055 3.945 23 O -0.233 6.233 24 C -0.056 4.056 25 C 0.028 3.972 26 F -0.108 7.108 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.128 0.872 33 H 0.147 0.853 34 H 0.081 0.919 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.062 0.938 38 H 0.115 0.885 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.812 -17.200 1.369 20.362 hybrid contribution 0.481 -0.039 -0.485 0.684 sum -10.331 -17.239 0.884 20.117 Atomic orbital electron populations 1.23096 0.78038 1.04072 1.01561 1.86102 1.21591 1.25862 1.88995 1.18781 0.90179 0.85612 1.00999 1.21071 1.00154 0.91255 1.07781 1.21089 0.93257 0.97313 0.97622 1.18926 0.92270 0.92152 0.99587 1.17903 1.04877 0.92710 1.00578 1.20760 0.93023 0.95092 0.96231 1.21098 1.06674 0.95220 1.02603 1.19480 0.91594 0.85713 0.92605 1.83956 1.45433 1.26266 1.51851 1.21323 1.11910 1.04756 1.08809 0.88905 1.25306 0.98235 0.94808 0.98090 1.70035 1.39278 1.07566 1.32573 0.85773 0.79789 0.78187 0.79683 1.19412 1.20233 1.19386 1.20097 1.02681 0.97937 1.00751 1.20608 0.97882 0.92263 0.96694 1.18459 0.84383 0.89520 1.02117 1.86057 1.13928 1.93346 1.29997 1.23020 0.97788 1.00604 0.84238 1.17237 0.86289 0.82428 1.11294 1.91468 1.76666 1.48312 1.94361 0.92395 0.88123 0.92441 0.84395 0.84328 0.87169 0.85348 0.91855 0.86333 0.86981 0.93838 0.88541 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.66 10.35 -19.49 -0.20 -3.86 16 3 C 0.09 1.16 6.69 -39.13 -0.26 0.89 16 4 C -0.18 -1.98 9.02 -39.47 -0.36 -2.34 16 5 C -0.07 -0.91 9.60 -39.27 -0.38 -1.29 16 6 C -0.03 -0.43 5.41 -104.75 -0.57 -0.99 16 7 C -0.16 -2.74 5.14 -104.86 -0.54 -3.28 16 8 C -0.03 -0.62 8.94 -39.27 -0.35 -0.97 16 9 C -0.24 -5.07 9.15 -39.45 -0.36 -5.43 16 10 C 0.16 3.77 6.65 -39.02 -0.26 3.51 16 11 O -0.17 -4.80 9.75 0.21 0.00 -4.80 16 12 C -0.39 -10.73 9.48 30.87 0.29 -10.43 16 13 H 0.09 2.35 5.19 -52.49 -0.27 2.08 16 14 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 15 N -0.86 -24.76 13.67 55.48 0.76 -24.00 16 16 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 17 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 18 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 C -0.20 -3.95 9.98 -39.45 -0.39 -4.35 16 21 C -0.06 -0.96 9.60 -39.27 -0.38 -1.34 16 22 C 0.10 1.55 5.66 -38.85 -0.22 1.33 16 23 O -0.32 -5.10 9.11 -19.45 -0.18 -5.27 16 24 C 0.04 0.49 11.13 101.05 1.12 1.62 16 25 C 0.05 0.71 7.31 -39.23 -0.29 0.43 16 26 F -0.13 -2.04 16.94 2.25 0.04 -2.00 16 27 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.31 7.65 -51.93 -0.40 -0.08 16 30 H 0.14 1.04 6.27 -52.48 -0.33 0.71 16 31 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.11 1.94 8.06 -52.48 -0.42 1.52 16 33 H 0.13 2.77 5.62 -52.49 -0.30 2.47 16 34 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 37 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 345.26 15.07 5.20 5.20 Total: -1.00 -31.53 345.26 -5.65 -37.17 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -4.21 Total: 2.86 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -2.04 Total: -20.47 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.76 Total: -24.00 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.38 Total: -13.94 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.53 -5.65 -37.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591399.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.273 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds