Wall clock time and date at job start Tue Mar 31 2020 12:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35922 * 116.99856 * 2 1 4 4 C 1.38862 * 119.91457 * 359.97438 * 3 2 1 5 5 C 1.37905 * 120.20452 * 179.76548 * 4 3 2 6 6 C 1.39404 * 120.00850 * 0.51315 * 5 4 3 7 7 C 1.48243 * 120.09082 * 179.76653 * 6 5 4 8 8 C 1.39477 * 120.05620 * 235.73061 * 7 6 5 9 9 C 1.37834 * 119.94544 * 179.97438 * 8 7 6 10 10 C 1.38997 * 120.05315 * 359.97438 * 9 8 7 11 11 O 1.35708 * 119.94043 * 179.74594 * 10 9 8 12 12 C 1.34817 * 117.00226 * 354.43952 * 11 10 9 13 13 H 1.08001 * 119.99788 * 5.04872 * 12 11 10 14 14 C 1.38623 * 119.99969 * 185.04572 * 12 11 10 15 15 N 1.31571 * 120.00311 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99629 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47059 * 60.00102 * 16 14 12 18 18 H 1.48507 * 109.46893 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47166 * 299.99962 * 16 14 12 20 20 C 1.39000 * 120.11442 * 0.02562 * 10 9 8 21 21 C 1.37829 * 120.05886 * 359.97438 * 20 10 9 22 22 C 1.39847 * 119.81427 * 359.49159 * 6 5 4 23 23 O 1.35907 * 120.09629 * 180.23264 * 22 6 5 24 24 C 1.42899 * 116.99970 * 94.99882 * 23 22 6 25 25 C 1.38591 * 119.80491 * 0.24942 * 22 6 5 26 26 F 1.35098 * 120.00569 * 180.02562 * 25 22 6 27 27 H 1.09000 * 109.47388 * 59.99988 * 1 2 3 28 28 H 1.08996 * 109.47420 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47181 * 300.00095 * 1 2 3 30 30 H 1.08005 * 119.90002 * 0.04782 * 4 3 2 31 31 H 1.08003 * 119.99778 * 180.25448 * 5 4 3 32 32 H 1.08004 * 120.02799 * 0.02562 * 8 7 6 33 33 H 1.07994 * 119.97325 * 180.02562 * 9 8 7 34 34 H 0.97002 * 119.99681 * 180.02562 * 15 14 12 35 35 H 1.08002 * 119.96622 * 179.97438 * 20 10 9 36 36 H 1.08002 * 120.02858 * 180.02562 * 21 20 10 37 37 H 1.08996 * 109.47622 * 55.00625 * 24 23 22 38 38 H 1.09003 * 109.46736 * 175.01468 * 24 23 22 39 39 H 1.09002 * 109.46731 * 295.00694 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2880 2.3745 -0.0005 5 6 1.9078 3.6064 0.0043 6 6 3.2995 3.6867 -0.0010 7 6 3.9677 5.0100 -0.0010 8 6 4.8854 5.3292 -1.0016 9 6 5.5049 6.5605 -0.9997 10 6 5.2153 7.4839 -0.0020 11 8 5.8305 8.6936 0.0006 12 6 6.7933 8.8926 -0.9219 13 1 6.9876 8.1392 -1.6708 14 6 7.5338 10.0645 -0.9091 15 7 7.2974 10.9822 0.0036 16 14 8.8673 10.3405 -2.1877 17 1 8.2654 10.3112 -3.5450 18 1 9.5068 11.6611 -1.9588 19 1 9.8894 9.2690 -2.0763 20 6 4.3011 7.1683 0.9964 21 6 3.6789 5.9384 0.9990 22 6 4.0636 2.5154 -0.0005 23 8 5.4207 2.5870 -0.0009 24 6 6.0748 2.5111 1.2674 25 6 3.4327 1.2814 0.0000 26 9 4.1668 0.1473 0.0010 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2096 2.3145 -0.0002 31 1 1.3149 4.5092 0.0081 32 1 5.1098 4.6125 -1.7778 33 1 6.2153 6.8083 -1.7745 34 1 7.8153 11.8023 0.0122 35 1 4.0782 7.8874 1.7707 36 1 2.9683 5.6938 1.7747 37 1 5.7622 1.6036 1.7837 38 1 7.1544 2.4912 1.1187 39 1 5.8066 3.3810 1.8670 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243591399.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:29 Heat of formation + Delta-G solvation = -108.330746 kcal Electronic energy + Delta-G solvation = -25731.730115 eV Core-core repulsion = 21713.100760 eV Total energy + Delta-G solvation = -4018.629355 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.89648 -41.43435 -40.63223 -39.90086 -38.29372 -37.24586 -34.33357 -32.38995 -31.88808 -31.28102 -29.46094 -28.01986 -27.72430 -27.20023 -24.13936 -23.76794 -23.12678 -22.05579 -19.85126 -19.66690 -18.93872 -18.44030 -18.13917 -17.48660 -17.33481 -16.52048 -16.46109 -16.24387 -16.12118 -15.88502 -15.63792 -15.52894 -15.38750 -15.22342 -14.55615 -14.23793 -14.14250 -13.71301 -13.58979 -13.49769 -13.22656 -12.99138 -12.71214 -12.55425 -12.42773 -12.35449 -12.16579 -12.10247 -11.85664 -11.21240 -11.10096 -10.79199 -9.82381 -9.78954 -9.47084 -8.69115 -8.47508 -6.14837 -0.14850 -0.02726 0.61016 0.74388 1.35826 1.45857 1.51340 2.00413 2.17791 2.30209 2.77383 2.89363 3.08048 3.19063 3.49493 3.63736 3.81865 3.99403 4.13280 4.16845 4.21753 4.32505 4.39944 4.41736 4.44166 4.56295 4.65027 4.68608 4.73154 4.79250 4.85101 4.99416 5.07467 5.14325 5.22866 5.29970 5.36489 5.59073 5.70193 5.76011 6.02305 6.15269 6.20190 6.38863 6.97348 7.76232 8.74880 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.025496 B = 0.002866 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.951479 B = 9766.198987 C =10290.371318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.331 6.331 3 C 0.102 3.898 4 C -0.170 4.170 5 C -0.058 4.058 6 C -0.058 4.058 7 C -0.126 4.126 8 C -0.039 4.039 9 C -0.242 4.242 10 C 0.123 3.877 11 O -0.226 6.226 12 C -0.414 4.414 13 H 0.101 0.899 14 C -0.019 4.019 15 N -0.918 5.918 16 Si 1.015 2.985 17 H -0.258 1.258 18 H -0.271 1.271 19 H -0.259 1.259 20 C -0.199 4.199 21 C -0.045 4.045 22 C 0.094 3.906 23 O -0.340 6.340 24 C 0.035 3.965 25 C 0.019 3.981 26 F -0.142 7.142 27 H 0.073 0.927 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.180 0.820 31 H 0.163 0.837 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.273 0.727 35 H 0.121 0.879 36 H 0.154 0.846 37 H 0.054 0.946 38 H 0.109 0.891 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.762 -20.072 1.047 24.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.245 6.245 3 C 0.056 3.944 4 C -0.188 4.188 5 C -0.076 4.076 6 C -0.059 4.059 7 C -0.127 4.127 8 C -0.057 4.057 9 C -0.261 4.261 10 C 0.073 3.927 11 O -0.132 6.132 12 C -0.490 4.490 13 H 0.118 0.882 14 C -0.217 4.217 15 N -0.555 5.555 16 Si 0.834 3.166 17 H -0.182 1.182 18 H -0.195 1.195 19 H -0.183 1.183 20 C -0.218 4.218 21 C -0.063 4.063 22 C 0.049 3.951 23 O -0.257 6.257 24 C -0.059 4.059 25 C -0.001 4.001 26 F -0.121 7.121 27 H 0.092 0.908 28 H 0.138 0.862 29 H 0.094 0.906 30 H 0.197 0.803 31 H 0.181 0.819 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.082 0.918 35 H 0.139 0.861 36 H 0.172 0.828 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.489 -19.897 1.108 24.064 hybrid contribution 0.944 0.294 -0.322 1.040 sum -12.546 -19.602 0.786 23.287 Atomic orbital electron populations 1.23509 0.75234 1.06081 1.03156 1.86105 1.24468 1.25485 1.88447 1.18953 0.89599 0.86860 0.99027 1.21434 1.01974 0.89657 1.05716 1.21345 0.91905 0.98957 0.95409 1.18818 0.93563 0.90401 1.03102 1.18198 1.02380 0.93533 0.98589 1.20918 0.93372 0.94107 0.97272 1.21122 1.06917 0.96015 1.02058 1.19994 0.92804 0.85511 0.94431 1.83926 1.47260 1.28680 1.53325 1.21761 1.12498 1.05424 1.09294 0.88210 1.26528 1.00583 0.94221 1.00401 1.70172 1.41476 1.08509 1.35387 0.84698 0.76552 0.78378 0.76937 1.18195 1.19513 1.18336 1.20372 1.02075 0.99357 1.00015 1.20993 0.97522 0.90554 0.97191 1.18580 0.84090 0.90065 1.02333 1.86010 1.14755 1.93530 1.31426 1.23147 0.98484 1.00836 0.83428 1.17449 0.87401 0.81906 1.13355 1.91427 1.77166 1.48795 1.94672 0.90818 0.86243 0.90620 0.80305 0.81942 0.86040 0.86415 0.91766 0.86071 0.82828 0.92726 0.87254 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -6.60 10.35 -92.67 -0.96 -7.56 16 3 C 0.10 2.25 6.69 22.56 0.15 2.40 16 4 C -0.17 -2.77 9.02 22.34 0.20 -2.57 16 5 C -0.06 -1.14 9.60 22.47 0.22 -0.92 16 6 C -0.06 -1.56 5.41 -19.95 -0.11 -1.67 16 7 C -0.13 -4.07 5.14 -20.02 -0.10 -4.17 16 8 C -0.04 -1.43 8.94 22.47 0.20 -1.23 16 9 C -0.24 -10.68 9.15 22.36 0.20 -10.47 16 10 C 0.12 6.03 6.65 22.63 0.15 6.18 16 11 O -0.23 -13.37 9.75 -22.15 -0.22 -13.58 16 12 C -0.41 -23.93 9.48 67.91 0.64 -23.29 16 13 H 0.10 5.34 5.19 -2.91 -0.02 5.33 16 14 C -0.02 -1.09 5.49 84.82 0.47 -0.63 16 15 N -0.92 -55.73 13.67 21.61 0.30 -55.43 16 16 Si 1.02 42.73 29.55 68.60 2.03 44.76 16 17 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 20 C -0.20 -8.07 9.98 22.36 0.22 -7.85 16 21 C -0.04 -1.43 9.60 22.47 0.22 -1.21 16 22 C 0.09 2.74 5.66 22.74 0.13 2.87 16 23 O -0.34 -10.66 9.11 -92.50 -0.84 -11.50 16 24 C 0.03 0.88 11.13 113.37 1.26 2.14 16 25 C 0.02 0.53 7.31 22.50 0.16 0.70 16 26 F -0.14 -4.34 16.94 44.97 0.76 -3.58 16 27 H 0.07 0.44 7.65 -2.39 -0.02 0.42 16 28 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 0.42 7.65 -2.39 -0.02 0.40 16 30 H 0.18 1.47 6.27 -2.91 -0.02 1.45 16 31 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.12 5.34 5.62 -2.91 -0.02 5.32 16 34 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 36 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -74.18 345.26 7.29 -66.89 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 1.09 Total: 18.48 kcal Atomic # 6 Polarization: -43.60 SS G_CDS: 5.13 Total: -38.48 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.30 Total: -55.43 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -2.02 Total: -32.65 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.76 Total: -3.58 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -74.18 7.29 -66.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591399.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.438 kcal (2) G-P(sol) polarization free energy of solvation -74.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds