Wall clock time and date at job start Tue Mar 31 2020 11:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21291 * 120.00159 * 2 1 4 4 N 1.34781 * 119.99977 * 180.02562 * 2 1 3 5 5 C 1.39946 * 119.99744 * 175.84621 * 4 2 1 6 6 C 1.38914 * 119.95761 * 34.51599 * 5 4 2 7 7 C 1.37902 * 120.07606 * 179.69719 * 6 5 4 8 8 C 1.39397 * 119.98962 * 0.57403 * 7 6 5 9 9 C 1.48341 * 120.04479 * 179.72115 * 8 7 6 10 10 C 1.39030 * 120.41984 * 309.72519 * 9 8 7 11 11 C 1.40949 * 118.12557 * 180.02562 * 10 9 8 12 12 C 1.41373 * 120.56995 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00166 * 145.52962 * 12 11 10 14 14 C 1.39901 * 120.00099 * 325.53488 * 12 11 10 15 15 N 1.30856 * 119.99777 * 4.38231 * 14 12 11 16 16 Si 1.86795 * 119.99722 * 184.38201 * 14 12 11 17 17 H 1.48506 * 109.47107 * 90.00292 * 16 14 12 18 18 H 1.48504 * 109.47013 * 209.99636 * 16 14 12 19 19 H 1.48501 * 109.47642 * 329.99846 * 16 14 12 20 20 C 1.40803 * 118.85873 * 0.02562 * 11 10 9 21 21 N 1.31510 * 120.69939 * 0.02562 * 20 11 10 22 22 C 1.32153 * 122.07988 * 359.97438 * 21 20 11 23 23 F 1.35100 * 119.45842 * 179.97438 * 22 21 20 24 24 C 1.39394 * 119.91631 * 359.44976 * 8 7 6 25 25 C 1.38067 * 119.91858 * 0.26955 * 24 8 7 26 26 F 1.35101 * 119.99675 * 180.02562 * 25 24 8 27 27 H 1.09002 * 109.46771 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46835 * 299.99501 * 1 2 3 29 29 H 1.08991 * 109.47045 * 59.99746 * 1 2 3 30 30 H 0.96999 * 119.99601 * 355.84879 * 4 2 1 31 31 H 1.07991 * 119.96399 * 0.02562 * 6 5 4 32 32 H 1.07999 * 120.00601 * 180.30191 * 7 6 5 33 33 H 1.07992 * 120.93467 * 0.04628 * 10 9 8 34 34 H 0.96997 * 120.00068 * 179.97438 * 15 14 12 35 35 H 1.07997 * 119.65104 * 179.72397 * 20 11 10 36 36 H 1.07992 * 120.04064 * 180.29687 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5776 -1.1687 -0.0883 6 6 4.3116 -0.1540 0.5129 7 6 5.6883 -0.1565 0.4332 8 6 6.3442 -1.1716 -0.2614 9 6 7.8248 -1.1720 -0.3531 10 6 8.5054 -0.0290 -0.7570 11 6 9.9121 -0.0834 -0.8277 12 6 10.6560 1.0486 -1.2326 13 1 11.6257 1.2413 -0.7979 14 6 10.1359 1.9193 -2.1962 15 7 8.9264 1.7347 -2.6601 16 14 11.1683 3.3453 -2.8207 17 1 11.9556 2.9068 -4.0011 18 1 10.2777 4.4683 -3.2092 19 1 12.0923 3.7945 -1.7484 20 6 10.5636 -1.2848 -0.4891 21 7 9.8740 -2.3397 -0.1135 22 6 8.5548 -2.3248 -0.0359 23 9 7.8996 -3.4395 0.3557 24 6 5.6074 -2.1893 -0.8650 25 6 4.2295 -2.1865 -0.7780 26 9 3.5138 -3.1725 -1.3620 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.6978 -2.0062 0.0599 31 1 3.8037 0.6348 1.0478 32 1 6.2580 0.6303 0.9052 33 1 7.9714 0.8752 -1.0092 34 1 8.5656 2.3385 -3.3280 35 1 11.6407 -1.3421 -0.5430 36 1 6.1138 -2.9793 -1.3995 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243667954.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:21 Heat of formation + Delta-G solvation = -75.772546 kcal Electronic energy + Delta-G solvation = -25397.729131 eV Core-core repulsion = 21289.344052 eV Total energy + Delta-G solvation = -4108.385080 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.092 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.76728 -47.69849 -40.40960 -38.81093 -37.79015 -34.99231 -34.13675 -32.07737 -30.64106 -30.23829 -30.02170 -27.55125 -25.56511 -23.48589 -22.96336 -21.63983 -21.06638 -20.44626 -18.22351 -17.58426 -17.07315 -16.74070 -16.57362 -16.16914 -15.86095 -15.38626 -15.21677 -15.08356 -14.72939 -14.53790 -14.09864 -13.56468 -13.44997 -13.12294 -12.98630 -12.60960 -12.53979 -12.37687 -12.24528 -11.98608 -11.93463 -11.62420 -11.53531 -11.30376 -11.14278 -10.75053 -10.43812 -10.14173 -9.91659 -9.53211 -8.75914 -8.55038 -8.52124 -7.87799 -7.43843 -6.91764 -4.70072 1.14038 1.48194 2.21212 2.46954 2.64591 2.91091 2.97028 3.01062 3.01433 3.77823 3.87315 4.30978 4.42833 4.49784 4.83395 4.95550 4.99396 5.08773 5.17477 5.27305 5.44043 5.49760 5.58800 5.64268 5.97449 6.15806 6.30472 6.31608 6.45245 6.49488 6.57355 6.86553 6.92498 6.96841 7.12031 7.19531 7.39590 7.64552 7.69057 7.93706 8.17127 8.43453 8.52322 9.10719 9.98598 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013483 B = 0.003962 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.137089 B = 7066.023671 C = 8631.590177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.508 3.492 3 O -0.525 6.525 4 N -0.668 5.668 5 C 0.094 3.906 6 C -0.093 4.093 7 C -0.096 4.096 8 C 0.007 3.993 9 C -0.113 4.113 10 C -0.080 4.080 11 C 0.050 3.950 12 C -0.446 4.446 13 H 0.087 0.913 14 C 0.069 3.931 15 N -0.802 5.802 16 Si 0.923 3.077 17 H -0.268 1.268 18 H -0.276 1.276 19 H -0.260 1.260 20 C 0.024 3.976 21 N -0.495 5.495 22 C 0.178 3.822 23 F -0.143 7.143 24 C -0.120 4.120 25 C 0.072 3.928 26 F -0.143 7.143 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.411 0.589 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.150 0.850 34 H 0.286 0.714 35 H 0.141 0.859 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.524 -1.676 3.110 13.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.297 3.703 3 O -0.400 6.400 4 N -0.314 5.314 5 C 0.000 4.000 6 C -0.113 4.113 7 C -0.115 4.115 8 C 0.005 3.995 9 C -0.117 4.117 10 C -0.105 4.105 11 C 0.046 3.954 12 C -0.476 4.476 13 H 0.105 0.895 14 C -0.148 4.148 15 N -0.427 5.427 16 Si 0.747 3.253 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.137 4.137 21 N -0.207 5.207 22 C 0.024 3.976 23 F -0.123 7.123 24 C -0.140 4.140 25 C 0.051 3.949 26 F -0.121 7.121 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.247 0.753 31 H 0.164 0.836 32 H 0.154 0.846 33 H 0.168 0.832 34 H 0.097 0.903 35 H 0.159 0.841 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.975 -1.633 3.134 13.448 hybrid contribution -0.514 0.412 -0.774 1.016 sum -13.489 -1.220 2.360 13.748 Atomic orbital electron populations 1.21840 0.90720 1.04487 1.05666 1.21002 0.90839 0.83116 0.75375 1.90754 1.70253 1.31175 1.47813 1.43468 1.04828 1.10024 1.73102 1.17646 0.82894 0.97940 1.01524 1.21040 0.93379 0.98054 0.98808 1.21255 0.93382 0.98225 0.98656 1.18588 0.92549 0.93225 0.95095 1.19154 0.90795 0.95112 1.06652 1.22059 0.94575 0.96407 0.97466 1.18538 0.92374 0.93525 0.91004 1.19506 1.03864 1.05401 1.18825 0.89530 1.25979 0.95118 0.98197 0.95546 1.69672 1.14648 1.34892 1.23507 0.86058 0.79963 0.79475 0.79824 1.19256 1.20049 1.18376 1.22503 0.98343 0.87412 1.05392 1.66337 1.06662 1.32808 1.14903 1.17605 0.87166 0.82653 1.10127 1.91417 1.79542 1.51727 1.89621 1.21045 0.90811 1.00410 1.01684 1.17275 0.89592 0.88783 0.99252 1.91439 1.78125 1.60127 1.82454 0.90379 0.88381 0.88299 0.75325 0.83604 0.84649 0.83235 0.90316 0.84146 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.39 36.01 0.37 -0.69 16 2 C 0.51 5.91 7.78 -10.98 -0.09 5.83 16 3 O -0.52 -8.42 14.50 5.55 0.08 -8.34 16 4 N -0.67 -7.76 5.22 -9.78 -0.05 -7.82 16 5 C 0.09 1.45 6.32 -83.56 -0.53 0.92 16 6 C -0.09 -1.52 8.68 -39.45 -0.34 -1.86 16 7 C -0.10 -1.72 9.52 -39.27 -0.37 -2.09 16 8 C 0.01 0.14 5.33 -104.88 -0.56 -0.42 16 9 C -0.11 -2.56 5.48 -104.75 -0.57 -3.13 16 10 C -0.08 -1.90 8.26 -38.26 -0.32 -2.22 16 11 C 0.05 1.22 5.56 -106.71 -0.59 0.63 16 12 C -0.45 -10.60 9.06 -37.77 -0.34 -10.95 16 13 H 0.09 1.93 7.85 -52.48 -0.41 1.52 16 14 C 0.07 1.58 5.43 -17.35 -0.09 1.49 16 15 N -0.80 -19.20 10.63 55.54 0.59 -18.61 16 16 Si 0.92 17.37 29.56 -169.99 -5.03 12.34 16 17 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 18 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 19 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 20 C 0.02 0.57 10.96 -16.72 -0.18 0.38 16 21 N -0.50 -12.01 10.33 -12.58 -0.13 -12.14 16 22 C 0.18 4.21 8.30 -16.72 -0.14 4.07 16 23 F -0.14 -3.22 15.89 2.25 0.04 -3.18 16 24 C -0.12 -2.20 8.83 -39.21 -0.35 -2.55 16 25 C 0.07 1.18 7.30 -39.30 -0.29 0.89 16 26 F -0.14 -2.15 16.94 2.25 0.04 -2.11 16 27 H 0.08 0.30 7.92 -51.93 -0.41 -0.12 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.41 3.44 8.49 -40.82 -0.35 3.09 16 31 H 0.15 2.32 6.18 -52.49 -0.32 2.00 16 32 H 0.14 2.30 8.05 -52.49 -0.42 1.87 16 33 H 0.15 3.66 6.22 -52.49 -0.33 3.34 16 34 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 35 H 0.14 2.95 8.06 -52.49 -0.42 2.53 16 36 H 0.14 2.53 7.78 -52.49 -0.41 2.12 16 LS Contribution 326.74 15.07 4.92 4.92 Total: -1.00 -28.82 326.74 -6.98 -35.80 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -3.05 Total: 8.82 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -4.39 Total: -9.69 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.41 Total: -38.57 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.08 Total: -8.34 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.07 Total: -5.30 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.34 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.82 -6.98 -35.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243667954.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.972 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds