Wall clock time and date at job start Tue Mar 31 2020 11:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21291 * 120.00159 * 2 1 4 4 N 1.34781 * 119.99977 * 180.02562 * 2 1 3 5 5 C 1.39946 * 119.99744 * 175.84621 * 4 2 1 6 6 C 1.38914 * 119.95761 * 34.51599 * 5 4 2 7 7 C 1.37902 * 120.07606 * 179.69719 * 6 5 4 8 8 C 1.39397 * 119.98962 * 0.57403 * 7 6 5 9 9 C 1.48341 * 120.04479 * 179.72115 * 8 7 6 10 10 C 1.39030 * 120.41984 * 309.72519 * 9 8 7 11 11 C 1.40949 * 118.12557 * 180.02562 * 10 9 8 12 12 C 1.41373 * 120.56995 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00166 * 145.52962 * 12 11 10 14 14 C 1.39901 * 120.00099 * 325.53488 * 12 11 10 15 15 N 1.30856 * 119.99777 * 4.38231 * 14 12 11 16 16 Si 1.86795 * 119.99722 * 184.38201 * 14 12 11 17 17 H 1.48506 * 109.47107 * 90.00292 * 16 14 12 18 18 H 1.48504 * 109.47013 * 209.99636 * 16 14 12 19 19 H 1.48501 * 109.47642 * 329.99846 * 16 14 12 20 20 C 1.40803 * 118.85873 * 0.02562 * 11 10 9 21 21 N 1.31510 * 120.69939 * 0.02562 * 20 11 10 22 22 C 1.32153 * 122.07988 * 359.97438 * 21 20 11 23 23 F 1.35100 * 119.45842 * 179.97438 * 22 21 20 24 24 C 1.39394 * 119.91631 * 359.44976 * 8 7 6 25 25 C 1.38067 * 119.91858 * 0.26955 * 24 8 7 26 26 F 1.35101 * 119.99675 * 180.02562 * 25 24 8 27 27 H 1.09002 * 109.46771 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46835 * 299.99501 * 1 2 3 29 29 H 1.08991 * 109.47045 * 59.99746 * 1 2 3 30 30 H 0.96999 * 119.99601 * 355.84879 * 4 2 1 31 31 H 1.07991 * 119.96399 * 0.02562 * 6 5 4 32 32 H 1.07999 * 120.00601 * 180.30191 * 7 6 5 33 33 H 1.07992 * 120.93467 * 0.04628 * 10 9 8 34 34 H 0.96997 * 120.00068 * 179.97438 * 15 14 12 35 35 H 1.07997 * 119.65104 * 179.72397 * 20 11 10 36 36 H 1.07992 * 120.04064 * 180.29687 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5776 -1.1687 -0.0883 6 6 4.3116 -0.1540 0.5129 7 6 5.6883 -0.1565 0.4332 8 6 6.3442 -1.1716 -0.2614 9 6 7.8248 -1.1720 -0.3531 10 6 8.5054 -0.0290 -0.7570 11 6 9.9121 -0.0834 -0.8277 12 6 10.6560 1.0486 -1.2326 13 1 11.6257 1.2413 -0.7979 14 6 10.1359 1.9193 -2.1962 15 7 8.9264 1.7347 -2.6601 16 14 11.1683 3.3453 -2.8207 17 1 11.9556 2.9068 -4.0011 18 1 10.2777 4.4683 -3.2092 19 1 12.0923 3.7945 -1.7484 20 6 10.5636 -1.2848 -0.4891 21 7 9.8740 -2.3397 -0.1135 22 6 8.5548 -2.3248 -0.0359 23 9 7.8996 -3.4395 0.3557 24 6 5.6074 -2.1893 -0.8650 25 6 4.2295 -2.1865 -0.7780 26 9 3.5138 -3.1725 -1.3620 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.6978 -2.0062 0.0599 31 1 3.8037 0.6348 1.0478 32 1 6.2580 0.6303 0.9052 33 1 7.9714 0.8752 -1.0092 34 1 8.5656 2.3385 -3.3280 35 1 11.6407 -1.3421 -0.5430 36 1 6.1138 -2.9793 -1.3995 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243667954.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:20 Heat of formation + Delta-G solvation = -91.903238 kcal Electronic energy + Delta-G solvation = -25398.428611 eV Core-core repulsion = 21289.344052 eV Total energy + Delta-G solvation = -4109.084559 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.092 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.04471 -49.50753 -41.52451 -40.42889 -39.25270 -36.19009 -35.92619 -33.54014 -32.23930 -31.72918 -31.07100 -28.84216 -27.38765 -24.91130 -24.47846 -23.34509 -22.51984 -21.61722 -19.59202 -19.06895 -18.54440 -18.18444 -18.07243 -17.66833 -17.27105 -16.81384 -16.62356 -16.48016 -16.23719 -15.91560 -15.32832 -15.10322 -14.76892 -14.50605 -14.24644 -14.10335 -13.95333 -13.75172 -13.54375 -13.43950 -13.16364 -13.08117 -13.00901 -12.86135 -12.72120 -12.34074 -11.82623 -11.64805 -11.25351 -11.02104 -10.39087 -10.33972 -9.95399 -9.57968 -8.98519 -8.67044 -6.55047 -0.28768 0.08754 0.54497 0.80597 1.43638 1.47349 1.50725 1.57333 1.94172 2.19632 2.46615 2.64429 2.99218 3.17415 3.39919 3.53191 3.68464 3.83349 4.05484 4.15019 4.20018 4.38479 4.49886 4.63031 4.64976 4.73615 4.81739 4.94089 4.96312 5.05883 5.14436 5.17292 5.24333 5.39967 5.58001 5.76427 5.81129 5.88799 6.29930 6.34856 6.61121 6.71094 7.02351 7.25454 8.24872 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013483 B = 0.003962 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.137089 B = 7066.023671 C = 8631.590177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.504 3.496 3 O -0.572 6.572 4 N -0.659 5.659 5 C 0.110 3.890 6 C -0.094 4.094 7 C -0.096 4.096 8 C -0.023 4.023 9 C -0.102 4.102 10 C -0.098 4.098 11 C 0.031 3.969 12 C -0.465 4.465 13 H 0.097 0.903 14 C 0.031 3.969 15 N -0.829 5.829 16 Si 0.994 3.006 17 H -0.264 1.264 18 H -0.272 1.272 19 H -0.252 1.252 20 C 0.015 3.985 21 N -0.508 5.508 22 C 0.158 3.842 23 F -0.140 7.140 24 C -0.126 4.126 25 C 0.075 3.925 26 F -0.132 7.132 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.429 0.571 31 H 0.153 0.847 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.291 0.709 35 H 0.161 0.839 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.261 -1.160 2.925 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.296 3.704 3 O -0.451 6.451 4 N -0.307 5.307 5 C 0.014 3.986 6 C -0.114 4.114 7 C -0.115 4.115 8 C -0.024 4.024 9 C -0.105 4.105 10 C -0.123 4.123 11 C 0.027 3.973 12 C -0.494 4.494 13 H 0.115 0.885 14 C -0.184 4.184 15 N -0.455 5.455 16 Si 0.815 3.185 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.175 1.175 20 C -0.146 4.146 21 N -0.220 5.220 22 C 0.004 3.996 23 F -0.120 7.120 24 C -0.145 4.145 25 C 0.054 3.946 26 F -0.111 7.111 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.126 0.874 30 H 0.268 0.732 31 H 0.170 0.830 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.102 0.898 35 H 0.178 0.822 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.761 -1.169 2.966 15.102 hybrid contribution -0.114 0.226 -0.715 0.758 sum -14.875 -0.944 2.251 15.074 Atomic orbital electron populations 1.21905 0.85943 1.07041 1.06705 1.22079 0.92903 0.81979 0.73465 1.90740 1.71631 1.32825 1.49862 1.43591 1.03146 1.11424 1.72517 1.17708 0.84910 0.96525 0.99471 1.21101 0.92711 0.98560 0.99006 1.21282 0.94176 0.97659 0.98344 1.18509 0.91226 0.95028 0.97670 1.19288 0.92426 0.94126 1.04691 1.21994 0.94701 0.96670 0.98962 1.18860 0.92892 0.94313 0.91270 1.19838 1.04443 1.05760 1.19405 0.88502 1.26868 0.96026 1.00318 0.95160 1.69753 1.16104 1.35821 1.23809 0.84988 0.78283 0.76009 0.79251 1.18927 1.19654 1.17493 1.22801 0.99262 0.87082 1.05423 1.66336 1.07158 1.33245 1.15248 1.17798 0.87298 0.83283 1.11183 1.91406 1.79437 1.51485 1.89658 1.21005 0.91864 0.99920 1.01756 1.17114 0.88904 0.89284 0.99322 1.91463 1.77658 1.59716 1.82254 0.87151 0.86906 0.87422 0.73152 0.82971 0.84588 0.84274 0.89769 0.82155 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 10.39 71.24 0.74 -0.64 16 2 C 0.50 10.51 7.78 87.66 0.68 11.19 16 3 O -0.57 -17.66 14.50 -3.06 -0.04 -17.71 16 4 N -0.66 -13.65 5.22 -303.22 -1.58 -15.24 16 5 C 0.11 3.22 6.32 38.23 0.24 3.46 16 6 C -0.09 -3.03 8.68 22.35 0.19 -2.84 16 7 C -0.10 -3.48 9.52 22.47 0.21 -3.27 16 8 C -0.02 -0.92 5.33 -20.03 -0.11 -1.03 16 9 C -0.10 -4.75 5.48 -19.95 -0.11 -4.86 16 10 C -0.10 -4.84 8.26 23.12 0.19 -4.65 16 11 C 0.03 1.56 5.56 -21.22 -0.12 1.44 16 12 C -0.46 -22.30 9.06 23.44 0.21 -22.08 16 13 H 0.10 4.31 7.85 -2.91 -0.02 4.29 16 14 C 0.03 1.42 5.43 85.24 0.46 1.89 16 15 N -0.83 -40.22 10.63 21.82 0.23 -39.99 16 16 Si 0.99 34.95 29.56 68.60 2.03 36.98 16 17 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 18 H -0.27 -9.32 7.11 99.48 0.71 -8.62 16 19 H -0.25 -8.45 7.11 99.48 0.71 -7.74 16 20 C 0.02 0.73 10.96 85.37 0.94 1.67 16 21 N -0.51 -25.17 10.33 -193.71 -2.00 -27.18 16 22 C 0.16 7.65 8.30 85.09 0.71 8.36 16 23 F -0.14 -6.43 15.89 44.97 0.71 -5.72 16 24 C -0.13 -4.68 8.83 22.51 0.20 -4.48 16 25 C 0.08 2.38 7.30 22.45 0.16 2.55 16 26 F -0.13 -3.75 16.94 44.97 0.76 -2.98 16 27 H 0.11 0.28 7.92 -2.39 -0.02 0.27 16 28 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.43 5.73 8.49 -92.71 -0.79 4.94 16 31 H 0.15 4.78 6.18 -2.92 -0.02 4.76 16 32 H 0.14 4.80 8.05 -2.91 -0.02 4.78 16 33 H 0.14 7.13 6.22 -2.91 -0.02 7.11 16 34 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 35 H 0.16 6.79 8.06 -2.91 -0.02 6.76 16 36 H 0.13 4.96 7.78 -2.91 -0.02 4.94 16 Total: -1.00 -63.39 326.74 5.09 -58.30 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.38 Total: 26.83 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 4.61 Total: -13.30 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -3.35 Total: -82.40 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.04 Total: -17.71 kcal Atomic # 9 Polarization: -10.18 SS G_CDS: 1.48 Total: -8.70 kcal Atomic # 14 Polarization: 34.95 SS G_CDS: 2.03 Total: 36.98 kcal Total: -63.39 5.09 -58.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243667954.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.603 kcal (2) G-P(sol) polarization free energy of solvation -63.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds