Wall clock time and date at job start Tue Mar 31 2020 11:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34773 * 119.99844 * 2 1 4 4 O 1.21564 * 120.00082 * 359.97438 * 3 2 1 5 5 C 1.47712 * 119.99747 * 180.02562 * 3 2 1 6 6 C 1.39731 * 120.01318 * 179.97438 * 5 3 2 7 7 C 1.37635 * 120.03212 * 179.97438 * 6 5 3 8 8 C 1.39509 * 120.05389 * 359.97438 * 7 6 5 9 9 C 1.48233 * 119.99187 * 179.97438 * 8 7 6 10 10 C 1.39104 * 120.42254 * 65.00110 * 9 8 7 11 11 C 1.40934 * 118.11671 * 179.97438 * 10 9 8 12 12 C 1.41384 * 120.56759 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00399 * 203.55093 * 12 11 10 14 14 C 1.39901 * 120.00071 * 23.55030 * 12 11 10 15 15 N 1.30861 * 119.99860 * 17.59936 * 14 12 11 16 16 Si 1.86796 * 120.00047 * 197.59892 * 14 12 11 17 17 H 1.48508 * 109.47228 * 90.00076 * 16 14 12 18 18 H 1.48495 * 109.47460 * 209.99668 * 16 14 12 19 19 H 1.48504 * 109.47334 * 329.99968 * 16 14 12 20 20 C 1.40807 * 118.86655 * 0.02562 * 11 10 9 21 21 N 1.31505 * 120.71334 * 359.97438 * 20 11 10 22 22 C 1.32161 * 122.08522 * 0.02562 * 21 20 11 23 23 F 1.35104 * 119.46146 * 179.97438 * 22 21 20 24 24 C 1.39698 * 120.01980 * 0.25695 * 8 7 6 25 25 F 1.35099 * 120.01249 * 179.72481 * 24 8 7 26 26 C 1.37919 * 119.97149 * 359.48583 * 24 8 7 27 27 H 1.08996 * 109.47218 * 60.00216 * 1 2 3 28 28 H 1.09001 * 109.46964 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46681 * 299.99818 * 1 2 3 30 30 H 0.96998 * 119.99629 * 179.97438 * 2 1 3 31 31 H 1.08004 * 119.98512 * 359.95769 * 6 5 3 32 32 H 1.08003 * 119.97775 * 179.97438 * 7 6 5 33 33 H 1.07996 * 120.94424 * 0.02562 * 10 9 8 34 34 H 0.96998 * 119.99948 * 180.02562 * 15 14 12 35 35 H 1.08003 * 119.64745 * 179.71806 * 20 11 10 36 36 H 1.08002 * 120.02783 * 180.28319 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2200 -0.0005 5 6 3.6160 1.1672 -0.0006 6 6 4.3150 2.3771 -0.0011 7 6 5.6913 2.3775 -0.0011 8 6 6.3904 1.1702 0.0000 9 6 7.8727 1.1723 -0.0006 10 6 8.5768 1.6814 1.0857 11 6 9.9850 1.6588 1.0340 12 6 10.7521 2.1624 2.1096 13 1 11.7650 2.4970 1.9405 14 6 10.1992 2.2273 3.3931 15 7 9.1327 1.5264 3.6822 16 14 10.9834 3.3145 4.6940 17 1 10.3802 4.6703 4.6354 18 1 10.7495 2.7264 6.0373 19 1 12.4440 3.4112 4.4435 20 6 10.6149 1.1262 -0.1071 21 7 9.9042 0.6566 -1.1090 22 6 8.5827 0.6615 -1.0953 23 9 7.9054 0.1659 -2.1540 24 6 5.6938 -0.0407 -0.0044 25 9 6.3710 -1.2098 -0.0089 26 6 4.3146 -0.0423 0.0010 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9500 -0.8401 0.0004 31 1 3.7749 3.3124 -0.0018 32 1 6.2307 3.3132 -0.0020 33 1 8.0590 2.0818 1.9447 34 1 8.7491 1.5716 4.5720 35 1 11.6934 1.1069 -0.1620 36 1 3.7752 -0.9779 0.0023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244665698.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:48 Heat of formation + Delta-G solvation = -92.881326 kcal Electronic energy + Delta-G solvation = -25493.487586 eV Core-core repulsion = 21384.360614 eV Total energy + Delta-G solvation = -4109.126972 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.092 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.00867 -49.43388 -41.29845 -40.33113 -39.10855 -36.05154 -35.81084 -34.31833 -32.29480 -31.81854 -30.63406 -27.82228 -27.42748 -25.36417 -23.93015 -23.58370 -22.80834 -21.61339 -19.73626 -19.30288 -18.56098 -18.02698 -17.74298 -17.32699 -17.16153 -16.72283 -16.61785 -16.48000 -16.31893 -16.22125 -15.44677 -15.21671 -14.74182 -14.39216 -14.28308 -14.14859 -14.02818 -13.88997 -13.67875 -13.34601 -13.20195 -13.10194 -13.02143 -12.84529 -12.66502 -12.31993 -11.85444 -11.26620 -11.24808 -10.64257 -10.39742 -10.24814 -10.06504 -9.81160 -9.44418 -8.82368 -6.53246 -0.56208 0.05636 0.41874 0.76020 1.42298 1.49779 1.56514 1.61830 2.10457 2.16261 2.50848 2.58749 3.04015 3.20235 3.39056 3.45182 3.59201 3.75436 3.93845 4.10729 4.23275 4.43192 4.52026 4.58991 4.64123 4.68657 4.81356 4.91817 4.95428 5.01770 5.08627 5.13671 5.18296 5.31643 5.49819 5.61503 5.69435 5.85967 6.31249 6.39074 6.56167 6.60953 7.06270 7.27932 8.12211 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014704 B = 0.003888 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.820923 B = 7200.372897 C = 8391.041311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.718 5.718 3 C 0.565 3.435 4 O -0.569 6.569 5 C -0.119 4.119 6 C -0.063 4.063 7 C -0.087 4.087 8 C -0.047 4.047 9 C -0.103 4.103 10 C -0.109 4.109 11 C 0.035 3.965 12 C -0.454 4.454 13 H 0.100 0.900 14 C 0.037 3.963 15 N -0.807 5.807 16 Si 0.991 3.009 17 H -0.260 1.260 18 H -0.270 1.270 19 H -0.252 1.252 20 C 0.000 4.000 21 N -0.502 5.502 22 C 0.140 3.860 23 F -0.146 7.146 24 C 0.085 3.915 25 F -0.143 7.143 26 C -0.102 4.102 27 H 0.056 0.944 28 H 0.114 0.886 29 H 0.055 0.945 30 H 0.416 0.584 31 H 0.156 0.844 32 H 0.148 0.852 33 H 0.135 0.865 34 H 0.297 0.703 35 H 0.159 0.841 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.828 -1.530 0.169 12.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.370 5.370 3 C 0.352 3.648 4 O -0.449 6.449 5 C -0.122 4.122 6 C -0.082 4.082 7 C -0.105 4.105 8 C -0.049 4.049 9 C -0.106 4.106 10 C -0.134 4.134 11 C 0.030 3.970 12 C -0.482 4.482 13 H 0.118 0.882 14 C -0.181 4.181 15 N -0.430 5.430 16 Si 0.810 3.190 17 H -0.184 1.184 18 H -0.194 1.194 19 H -0.176 1.176 20 C -0.161 4.161 21 N -0.214 5.214 22 C -0.013 4.013 23 F -0.126 7.126 24 C 0.066 3.934 25 F -0.122 7.122 26 C -0.121 4.121 27 H 0.075 0.925 28 H 0.133 0.867 29 H 0.074 0.926 30 H 0.254 0.746 31 H 0.174 0.826 32 H 0.165 0.835 33 H 0.153 0.847 34 H 0.109 0.891 35 H 0.176 0.824 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -13.081 -1.318 -0.417 13.154 hybrid contribution 0.466 -0.234 0.889 1.030 sum -12.615 -1.552 0.471 12.719 Atomic orbital electron populations 1.21781 0.77574 1.04711 1.01982 1.45703 1.09013 1.08188 1.74077 1.18071 0.86563 0.84285 0.75881 1.90760 1.70175 1.32481 1.51522 1.19782 0.93128 0.93507 1.05815 1.21347 0.92811 0.98757 0.95241 1.21207 0.93992 0.96806 0.98448 1.19154 0.92080 0.93652 0.99995 1.19135 0.92158 1.04248 0.95091 1.21706 0.94026 1.01293 0.96374 1.18803 0.92912 0.91032 0.94240 1.19954 1.01256 1.34951 0.92028 0.88168 1.26916 0.94735 0.94618 1.01847 1.69814 1.19200 1.30169 1.23853 0.85043 0.79916 0.78209 0.75793 1.18427 1.19436 1.17560 1.22637 0.98793 1.03603 0.91111 1.66261 1.06561 1.17334 1.31236 1.17704 0.87021 1.09914 0.86624 1.91385 1.78422 1.86835 1.55912 1.17806 0.90615 0.80535 1.04433 1.91489 1.80869 1.45881 1.93940 1.21287 0.90658 0.99959 1.00187 0.92538 0.86748 0.92604 0.74614 0.82614 0.83462 0.84715 0.89139 0.82426 0.80724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.02 10.70 127.77 1.37 2.38 16 2 N -0.72 -11.80 5.66 -487.60 -2.76 -14.56 16 3 C 0.56 14.03 7.77 86.75 0.67 14.70 16 4 O -0.57 -17.86 16.33 -3.92 -0.06 -17.92 16 5 C -0.12 -3.15 5.88 -20.07 -0.12 -3.27 16 6 C -0.06 -1.78 9.57 22.49 0.22 -1.56 16 7 C -0.09 -2.83 9.71 22.43 0.22 -2.62 16 8 C -0.05 -1.84 5.04 -19.96 -0.10 -1.94 16 9 C -0.10 -4.80 5.01 -19.95 -0.10 -4.90 16 10 C -0.11 -5.31 8.51 23.14 0.20 -5.11 16 11 C 0.03 1.73 5.59 -21.22 -0.12 1.62 16 12 C -0.45 -21.23 9.08 23.45 0.21 -21.02 16 13 H 0.10 4.35 7.90 -2.91 -0.02 4.32 16 14 C 0.04 1.63 5.17 85.24 0.44 2.07 16 15 N -0.81 -37.30 10.92 21.82 0.24 -37.06 16 16 Si 0.99 32.95 29.59 68.60 2.03 34.98 16 17 H -0.26 -8.44 7.11 99.48 0.71 -7.73 16 18 H -0.27 -8.70 7.11 99.48 0.71 -7.99 16 19 H -0.25 -8.10 7.11 99.48 0.71 -7.40 16 20 C 0.00 0.02 10.96 85.37 0.94 0.95 16 21 N -0.50 -25.58 10.33 -193.67 -2.00 -27.58 16 22 C 0.14 7.02 8.20 85.10 0.70 7.71 16 23 F -0.15 -7.04 16.67 44.97 0.75 -6.29 16 24 C 0.09 3.05 7.04 22.55 0.16 3.20 16 25 F -0.14 -5.72 16.66 44.97 0.75 -4.97 16 26 C -0.10 -2.65 9.50 22.54 0.21 -2.44 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.42 4.51 6.85 -92.71 -0.63 3.88 16 31 H 0.16 3.96 7.64 -2.91 -0.02 3.94 16 32 H 0.15 4.51 8.06 -2.91 -0.02 4.48 16 33 H 0.14 6.62 6.19 -2.91 -0.02 6.60 16 34 H 0.30 12.35 8.30 -92.71 -0.77 11.58 16 35 H 0.16 6.79 8.06 -2.91 -0.02 6.77 16 36 H 0.18 2.98 6.39 -2.91 -0.02 2.96 16 Total: -1.00 -64.49 329.01 4.37 -60.12 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.53 Total: 23.50 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 4.89 Total: -10.22 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -4.52 Total: -79.20 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.06 Total: -17.92 kcal Atomic # 9 Polarization: -12.76 SS G_CDS: 1.50 Total: -11.26 kcal Atomic # 14 Polarization: 32.95 SS G_CDS: 2.03 Total: 34.98 kcal Total: -64.49 4.37 -60.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244665698.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.757 kcal (2) G-P(sol) polarization free energy of solvation -64.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds