Wall clock time and date at job start Tue Mar 31 2020 12:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35905 * 116.99792 * 2 1 4 4 C 1.38520 * 119.99617 * 359.97438 * 3 2 1 5 5 C 1.39302 * 119.81703 * 179.97438 * 4 3 2 6 6 C 1.48272 * 120.09782 * 180.02562 * 5 4 3 7 7 C 1.39307 * 120.13481 * 309.69265 * 6 5 4 8 8 C 1.37963 * 119.97142 * 179.70095 * 7 6 5 9 9 C 1.38693 * 120.24216 * 0.58429 * 8 7 6 10 10 F 1.35101 * 119.86124 * 179.74243 * 9 8 7 11 11 C 1.38328 * 120.27197 * 359.72032 * 9 8 7 12 12 C 1.38712 * 120.02560 * 359.97202 * 11 9 8 13 13 O 1.35661 * 120.12187 * 179.97438 * 12 11 9 14 14 C 1.34817 * 116.99985 * 354.41017 * 13 12 11 15 15 H 1.07999 * 119.99902 * 5.05924 * 14 13 12 16 16 C 1.38652 * 119.99872 * 185.05812 * 14 13 12 17 17 N 1.31559 * 119.99995 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99812 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47115 * 89.99927 * 18 16 14 20 20 H 1.48494 * 109.46880 * 210.00225 * 18 16 14 21 21 H 1.48500 * 109.46911 * 329.99943 * 18 16 14 22 22 C 1.39441 * 119.80056 * 0.03932 * 5 4 3 23 23 C 1.38014 * 119.98393 * 0.02562 * 22 5 4 24 24 C 1.38267 * 120.18404 * 359.97438 * 23 22 5 25 25 C 1.50700 * 119.89823 * 180.02562 * 24 23 22 26 26 O 1.42893 * 109.47332 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.46945 * 299.99809 * 1 2 3 28 28 H 1.08997 * 109.46941 * 60.00114 * 1 2 3 29 29 H 1.08991 * 109.47059 * 180.02562 * 1 2 3 30 30 H 1.08003 * 120.09257 * 359.97438 * 4 3 2 31 31 H 1.08004 * 120.01187 * 0.02562 * 7 6 5 32 32 H 1.07996 * 119.88681 * 180.28243 * 8 7 6 33 33 H 1.07998 * 119.98841 * 180.02562 * 11 9 8 34 34 H 0.97001 * 119.99677 * 179.97438 * 17 16 14 35 35 H 1.07996 * 120.00881 * 180.27877 * 22 5 4 36 36 H 1.07998 * 119.91056 * 179.97438 * 23 22 5 37 37 H 1.09000 * 109.46853 * 119.99704 * 25 24 23 38 38 H 1.09004 * 109.46506 * 239.99319 * 25 24 23 39 39 H 0.96695 * 114.00362 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3726 -0.0005 5 6 1.9277 3.6118 0.0000 6 6 1.1261 4.8592 0.0000 7 6 0.1011 5.0318 -0.9274 8 6 -0.6467 6.1912 -0.9204 9 6 -0.3742 7.1926 -0.0004 10 9 -1.1079 8.3270 -0.0038 11 6 0.6455 7.0345 0.9210 12 6 1.4002 5.8707 0.9281 13 8 2.4009 5.7138 1.8304 14 6 2.6875 6.7708 2.6166 15 1 2.0773 7.6606 2.5686 16 6 3.7656 6.7155 3.4867 17 7 4.5086 5.6314 3.5455 18 14 4.1631 8.1805 4.5755 19 1 3.4352 8.0519 5.8635 20 1 5.6246 8.2223 4.8348 21 1 3.7453 9.4318 3.8936 22 6 3.3207 3.6756 0.0003 23 6 4.0644 2.5130 -0.0006 24 6 3.4322 1.2834 -0.0011 25 6 4.2506 0.0180 -0.0014 26 8 5.6405 0.3496 -0.0017 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.2128 2.3177 -0.0014 31 1 -0.1116 4.2561 -1.6482 32 1 -1.4440 6.3216 -1.6370 33 1 0.8534 7.8171 1.6356 34 1 5.2630 5.5929 4.1540 35 1 3.8174 4.6346 0.0052 36 1 5.1432 2.5639 -0.0008 37 1 4.0163 -0.5664 0.8884 38 1 4.0164 -0.5659 -0.8917 39 1 6.2281 -0.4183 -0.0023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244666720.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:18 Heat of formation + Delta-G solvation = -129.288279 kcal Electronic energy + Delta-G solvation = -26107.052154 eV Core-core repulsion = 22087.514012 eV Total energy + Delta-G solvation = -4019.538142 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.89025 -41.42994 -40.64125 -38.57541 -38.12107 -37.27602 -34.35618 -33.57540 -31.26487 -30.93146 -30.33313 -28.14700 -27.46402 -26.54305 -23.83566 -23.47631 -22.78743 -21.85264 -20.11763 -19.43901 -18.69623 -18.26067 -17.29987 -16.98651 -16.81315 -16.70559 -16.64251 -16.58518 -16.17140 -15.97977 -15.60108 -15.46285 -15.16605 -14.96315 -14.78029 -14.50123 -14.10304 -13.79773 -13.53414 -13.33470 -12.97701 -12.86614 -12.73312 -12.47787 -12.35356 -12.18007 -12.09656 -11.88146 -11.79328 -11.43021 -11.18131 -10.84730 -10.00738 -9.57108 -9.21414 -8.75791 -8.50113 -6.18820 -0.11146 0.48989 0.53434 0.65715 1.33253 1.41200 1.49612 2.12803 2.37713 2.56455 2.84227 3.06647 3.21403 3.31528 3.44807 3.69229 3.94570 4.05018 4.11982 4.19057 4.31044 4.34538 4.40417 4.46169 4.51316 4.59474 4.62110 4.78690 4.81718 4.86799 4.95277 5.03683 5.12278 5.24544 5.29124 5.41538 5.46345 5.55424 5.76729 5.84982 5.94402 6.02160 6.45376 6.92193 6.98962 7.66237 8.69465 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.009574 B = 0.005184 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.021374 B = 5400.267527 C = 7734.355474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.128 3.872 4 C -0.197 4.197 5 C 0.006 3.994 6 C -0.148 4.148 7 C -0.021 4.021 8 C -0.219 4.219 9 C 0.138 3.862 10 F -0.145 7.145 11 C -0.286 4.286 12 C 0.157 3.843 13 O -0.194 6.194 14 C -0.422 4.422 15 H 0.098 0.902 16 C -0.010 4.010 17 N -0.900 5.900 18 Si 1.012 2.988 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.256 1.256 22 C -0.137 4.137 23 C -0.068 4.068 24 C -0.144 4.144 25 C 0.138 3.862 26 O -0.588 6.588 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.127 0.873 30 H 0.153 0.847 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.128 0.872 34 H 0.274 0.726 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.888 -10.458 -8.776 15.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.083 3.917 4 C -0.215 4.215 5 C 0.006 3.994 6 C -0.149 4.149 7 C -0.039 4.039 8 C -0.238 4.238 9 C 0.119 3.881 10 F -0.124 7.124 11 C -0.306 4.306 12 C 0.103 3.897 13 O -0.098 6.098 14 C -0.498 4.498 15 H 0.115 0.885 16 C -0.210 4.210 17 N -0.536 5.536 18 Si 0.832 3.168 19 H -0.189 1.189 20 H -0.194 1.194 21 H -0.180 1.180 22 C -0.156 4.156 23 C -0.086 4.086 24 C -0.145 4.145 25 C 0.061 3.939 26 O -0.397 6.397 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.145 0.855 30 H 0.171 0.829 31 H 0.185 0.815 32 H 0.182 0.818 33 H 0.146 0.854 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.145 0.855 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -6.733 -10.292 -8.600 15.007 hybrid contribution 0.409 0.980 0.981 1.445 sum -6.324 -9.312 -7.619 13.593 Atomic orbital electron populations 1.23369 0.76522 1.05734 1.02157 1.86000 1.23349 1.25516 1.88806 1.18461 0.90898 0.84768 0.97618 1.21306 1.00712 0.90276 1.09210 1.18415 0.92194 0.91978 0.96784 1.18278 1.02328 0.94403 0.99897 1.20999 0.90596 0.97014 0.95297 1.20965 1.05842 0.94146 1.02845 1.17635 0.90567 0.83172 0.96707 1.91435 1.75637 1.49304 1.96001 1.21020 1.02171 1.01375 1.06026 1.19496 0.88432 0.92675 0.89066 1.84019 1.45057 1.38516 1.42177 1.21787 1.14613 0.94457 1.18950 0.88453 1.26454 0.94352 1.01474 0.98700 1.70193 1.17451 1.29033 1.36874 0.84679 0.78192 0.76281 0.77679 1.18851 1.19433 1.18023 1.21047 0.93860 0.97945 1.02724 1.20667 1.00139 0.90830 0.96947 1.19311 0.90934 0.95961 1.08283 1.20588 0.80154 0.91940 1.01191 1.86442 1.16721 1.38722 1.97828 0.92796 0.91281 0.85521 0.82913 0.81511 0.81781 0.85446 0.91734 0.88943 0.85464 0.91835 0.90561 0.74881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.32 -8.32 9.91 -92.48 -0.92 -9.23 16 3 C 0.13 4.11 6.65 22.47 0.15 4.26 16 4 C -0.20 -6.57 8.50 22.59 0.19 -6.38 16 5 C 0.01 0.26 5.27 -20.06 -0.11 0.16 16 6 C -0.15 -6.04 5.49 -19.93 -0.11 -6.15 16 7 C -0.02 -0.66 9.51 22.46 0.21 -0.45 16 8 C -0.22 -6.67 10.01 22.31 0.22 -6.44 16 9 C 0.14 5.15 7.30 22.40 0.16 5.32 16 10 F -0.15 -5.13 17.26 44.97 0.78 -4.36 16 11 C -0.29 -12.74 9.14 22.40 0.20 -12.53 16 12 C 0.16 7.62 6.55 22.81 0.15 7.76 16 13 O -0.19 -11.18 8.10 -21.62 -0.18 -11.36 16 14 C -0.42 -24.13 9.49 67.92 0.64 -23.48 16 15 H 0.10 5.21 5.21 -2.91 -0.02 5.19 16 16 C -0.01 -0.53 5.49 84.83 0.47 -0.07 16 17 N -0.90 -53.94 13.67 21.61 0.30 -53.64 16 18 Si 1.01 42.69 29.55 68.60 2.03 44.71 16 19 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 21 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 22 C -0.14 -6.17 8.79 22.51 0.20 -5.97 16 23 C -0.07 -2.75 9.36 22.22 0.21 -2.55 16 24 C -0.14 -5.00 5.90 -19.72 -0.12 -5.12 16 25 C 0.14 3.68 6.90 71.24 0.49 4.18 16 26 O -0.59 -15.56 12.13 -148.98 -1.81 -17.36 16 27 H 0.05 0.96 7.66 -2.38 -0.02 0.94 16 28 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 29 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.15 4.11 6.28 -2.91 -0.02 4.09 16 31 H 0.17 3.81 8.04 -2.91 -0.02 3.79 16 32 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.13 5.89 5.64 -2.91 -0.02 5.87 16 34 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.09 4.70 7.67 -2.91 -0.02 4.67 16 36 H 0.13 5.18 6.99 -2.91 -0.02 5.16 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.08 1.67 8.14 -2.38 -0.02 1.66 16 39 H 0.40 5.84 9.12 -74.06 -0.68 5.16 16 Total: -1.00 -73.23 341.14 4.73 -68.51 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.44 Total: 28.80 kcal Atomic # 6 Polarization: -50.15 SS G_CDS: 4.08 Total: -46.07 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.30 Total: -53.64 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -2.90 Total: -37.95 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.78 Total: -4.36 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -73.23 4.73 -68.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244666720.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.779 kcal (2) G-P(sol) polarization free energy of solvation -73.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds