Wall clock time and date at job start Tue Mar 31 2020 12:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35902 * 117.00020 * 2 1 4 4 C 1.38841 * 119.99588 * 0.02603 * 3 2 1 5 5 C 1.38218 * 120.20301 * 180.02562 * 4 3 2 6 6 C 1.50708 * 119.90667 * 179.97438 * 5 4 3 7 7 O 1.42895 * 109.47017 * 89.99917 * 6 5 4 8 8 C 1.38052 * 120.18664 * 359.69893 * 5 4 3 9 9 C 1.39408 * 119.97780 * 0.53139 * 8 5 4 10 10 C 1.48279 * 120.09783 * 179.76522 * 9 8 5 11 11 C 1.39301 * 120.13833 * 309.75032 * 10 9 8 12 12 C 1.37958 * 119.97300 * 179.97438 * 11 10 9 13 13 C 1.38685 * 120.24778 * 359.97438 * 12 11 10 14 14 F 1.35095 * 119.86608 * 179.97438 * 13 12 11 15 15 C 1.38335 * 120.26694 * 0.02562 * 13 12 11 16 16 C 1.38713 * 120.02852 * 359.97438 * 15 13 12 17 17 O 1.35655 * 120.12028 * 180.28100 * 16 15 13 18 18 C 1.34814 * 117.00271 * 354.39901 * 17 16 15 19 19 H 1.08002 * 120.00081 * 5.07140 * 18 17 16 20 20 C 1.38647 * 120.00047 * 185.06873 * 18 17 16 21 21 N 1.31561 * 120.00066 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00039 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46737 * 90.00229 * 22 20 18 24 24 H 1.48504 * 109.47003 * 210.00043 * 22 20 18 25 25 H 1.48500 * 109.47179 * 330.00166 * 22 20 18 26 26 C 1.38489 * 119.99030 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.46903 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46323 * 299.99465 * 1 2 3 29 29 H 1.08994 * 109.47107 * 59.99482 * 1 2 3 30 30 H 1.07999 * 119.89758 * 0.02562 * 4 3 2 31 31 H 1.09003 * 109.46339 * 209.99796 * 6 5 4 32 32 H 1.08998 * 109.46595 * 329.99656 * 6 5 4 33 33 H 0.96705 * 113.99759 * 179.97438 * 7 6 5 34 34 H 1.07994 * 120.01089 * 180.30183 * 8 5 4 35 35 H 1.08009 * 120.00890 * 359.97438 * 11 10 9 36 36 H 1.08002 * 119.88034 * 180.02562 * 12 11 10 37 37 H 1.08006 * 119.98702 * 180.02562 * 15 13 12 38 38 H 0.96999 * 119.99693 * 180.02562 * 21 20 18 39 39 H 1.08000 * 120.09464 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2898 2.3753 0.0005 5 6 1.9128 3.6090 0.0000 6 6 1.0854 4.8687 0.0000 7 8 0.8244 5.2671 1.3473 8 6 3.2909 3.6908 0.0052 9 6 4.0578 2.5266 -0.0002 10 6 5.5381 2.6113 0.0001 11 6 6.1923 3.4246 -0.9224 12 6 7.5698 3.5012 -0.9187 13 6 8.3076 2.7714 0.0012 14 9 9.6562 2.8519 -0.0024 15 6 7.6684 1.9606 0.9218 16 6 6.2839 1.8751 0.9282 17 8 5.6548 1.0850 1.8339 18 6 6.4340 0.3197 2.6243 19 1 7.5089 0.4137 2.5768 20 6 5.8555 -0.5880 3.4981 21 7 6.6158 -1.3345 4.2698 22 14 3.9963 -0.7501 3.5809 23 1 3.5453 -1.7774 2.6079 24 1 3.5954 -1.1568 4.9517 25 1 3.3704 0.5549 3.2487 26 6 3.4290 1.2831 -0.0005 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 0.2114 2.3167 0.0014 31 1 1.6297 5.6608 -0.5142 32 1 0.1419 4.6835 -0.5135 33 1 0.2954 6.0730 1.4236 34 1 3.7747 4.6563 0.0097 35 1 5.6213 3.9949 -1.6403 36 1 8.0754 4.1326 -1.6344 37 1 8.2474 1.3945 1.6365 38 1 6.2111 -1.9698 4.8809 39 1 4.0186 0.3782 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244840083.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:04 Heat of formation + Delta-G solvation = -106.606995 kcal Electronic energy + Delta-G solvation = -26286.364132 eV Core-core repulsion = 22267.809524 eV Total energy + Delta-G solvation = -4018.554608 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.37509 -40.14054 -39.21278 -37.75135 -36.74297 -36.06034 -32.57165 -32.18160 -30.71086 -29.56375 -28.17693 -27.45501 -25.77829 -25.38268 -22.94755 -21.89513 -21.28683 -20.40557 -18.18624 -17.87976 -17.54635 -17.38314 -16.29253 -15.80898 -15.59758 -15.48545 -15.25793 -15.18644 -15.07430 -14.46281 -14.09635 -14.06822 -13.83027 -13.36607 -13.30177 -13.14035 -12.63924 -12.42133 -12.31292 -12.10903 -11.92490 -11.63860 -11.35130 -11.20607 -10.95285 -10.78152 -10.70347 -10.55379 -10.28817 -10.18232 -9.61681 -8.97730 -8.82557 -8.09837 -7.94884 -7.42438 -6.53061 -4.20039 1.23833 1.63036 1.98309 2.01875 3.20421 3.26906 3.41956 3.44939 3.82140 4.18518 4.19569 4.49564 4.56612 4.81587 4.89805 4.93516 4.98959 5.07723 5.11278 5.17173 5.25723 5.33666 5.44930 5.46920 5.54144 5.62202 5.74133 5.82618 5.94555 6.21278 6.22660 6.46611 6.55271 6.68694 6.74050 6.77385 6.81690 6.99944 7.09228 7.41944 7.50207 7.62023 7.64227 7.88131 8.80715 9.37803 10.52984 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.009074 B = 0.006147 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.062291 B = 4554.011283 C = 6643.766168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.122 3.878 4 C -0.196 4.196 5 C -0.064 4.064 6 C 0.121 3.879 7 O -0.564 6.564 8 C -0.127 4.127 9 C 0.026 3.974 10 C -0.145 4.145 11 C -0.031 4.031 12 C -0.243 4.243 13 C 0.147 3.853 14 F -0.148 7.148 15 C -0.259 4.259 16 C 0.196 3.804 17 O -0.190 6.190 18 C -0.394 4.394 19 H 0.110 0.890 20 C 0.072 3.928 21 N -0.868 5.868 22 Si 0.894 3.106 23 H -0.267 1.267 24 H -0.282 1.282 25 H -0.253 1.253 26 C -0.117 4.117 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.123 0.877 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.376 0.624 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.148 0.852 38 H 0.282 0.718 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.699 9.641 -10.500 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.077 3.923 4 C -0.215 4.215 5 C -0.064 4.064 6 C 0.044 3.956 7 O -0.370 6.370 8 C -0.145 4.145 9 C 0.025 3.975 10 C -0.146 4.146 11 C -0.049 4.049 12 C -0.262 4.262 13 C 0.128 3.872 14 F -0.127 7.127 15 C -0.279 4.279 16 C 0.141 3.859 17 O -0.092 6.092 18 C -0.469 4.469 19 H 0.127 0.873 20 C -0.133 4.133 21 N -0.504 5.504 22 Si 0.719 3.281 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.176 1.176 26 C -0.136 4.136 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.141 0.859 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.223 0.777 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.165 0.835 38 H 0.093 0.907 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.449 8.669 -10.109 17.562 hybrid contribution -0.858 0.339 0.189 0.942 sum -12.308 9.008 -9.920 18.194 Atomic orbital electron populations 1.23010 0.79015 1.03631 1.01059 1.86119 1.20873 1.26962 1.88971 1.18842 0.92166 0.83922 0.97372 1.20956 0.99399 0.91734 1.09438 1.19150 0.93460 0.93148 1.00692 1.20946 0.97166 0.93743 0.83740 1.86649 1.76207 1.47728 1.26371 1.20958 0.92372 0.97915 1.03291 1.18259 0.91629 0.91728 0.95850 1.17795 0.90835 1.05413 1.00557 1.20507 0.92993 0.95362 0.96034 1.20507 0.94156 1.07559 1.03998 1.17538 0.76087 0.97175 0.96431 1.91434 1.30170 1.95075 1.95983 1.21110 0.95002 1.07030 1.04774 1.18679 0.89481 0.89918 0.87818 1.83628 1.35894 1.48345 1.41382 1.20824 0.92028 1.16745 1.17309 0.87302 1.24448 1.00311 0.94086 0.94466 1.69642 1.36329 1.22012 1.22389 0.86321 0.83469 0.80632 0.77697 1.19165 1.20717 1.17613 1.20601 0.91020 0.98736 1.03235 0.88479 0.92830 0.92900 0.85924 0.92649 0.93128 0.77733 0.85816 0.85513 0.85868 0.83477 0.90749 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -5.36 10.49 -19.43 -0.20 -5.56 16 3 C 0.12 2.17 6.68 -39.27 -0.26 1.91 16 4 C -0.20 -3.01 8.68 -39.37 -0.34 -3.35 16 5 C -0.06 -0.96 5.50 -104.69 -0.58 -1.53 16 6 C 0.12 1.34 7.16 36.01 0.26 1.60 16 7 O -0.56 -6.81 13.64 -35.23 -0.48 -7.29 16 8 C -0.13 -2.06 9.16 -39.21 -0.36 -2.42 16 9 C 0.03 0.48 5.27 -104.92 -0.55 -0.07 16 10 C -0.14 -2.80 5.49 -104.72 -0.57 -3.38 16 11 C -0.03 -0.50 9.51 -39.29 -0.37 -0.87 16 12 C -0.24 -4.01 10.01 -39.52 -0.40 -4.41 16 13 C 0.15 2.81 7.30 -39.38 -0.29 2.53 16 14 F -0.15 -2.77 17.26 2.25 0.04 -2.73 16 15 C -0.26 -5.62 9.14 -39.37 -0.36 -5.98 16 16 C 0.20 4.42 6.55 -38.75 -0.25 4.17 16 17 O -0.19 -4.86 6.95 0.39 0.00 -4.86 16 18 C -0.39 -10.87 9.94 30.88 0.31 -10.57 16 19 H 0.11 3.07 5.44 -52.49 -0.29 2.78 16 20 C 0.07 2.01 5.49 -17.52 -0.10 1.91 16 21 N -0.87 -24.77 13.96 55.48 0.77 -24.00 16 22 Si 0.89 21.97 28.62 -169.99 -4.86 17.10 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 25 H -0.25 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.12 -2.31 8.72 -39.08 -0.34 -2.66 16 27 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 29 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 30 H 0.12 1.54 6.28 -52.49 -0.33 1.21 16 31 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.38 2.40 9.12 45.56 0.42 2.81 16 34 H 0.12 1.77 8.04 -52.49 -0.42 1.35 16 35 H 0.13 1.64 8.04 -52.48 -0.42 1.21 16 36 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.15 3.36 5.64 -52.48 -0.30 3.07 16 38 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.14 2.86 7.70 -52.49 -0.40 2.45 16 LS Contribution 342.91 15.07 5.17 5.17 Total: -1.00 -32.01 342.91 -6.14 -38.16 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.36 Total: 5.82 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -3.22 Total: -21.81 kcal Atomic # 7 Polarization: -24.77 SS G_CDS: 0.77 Total: -24.00 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.68 Total: -17.71 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.04 Total: -2.73 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.86 Total: 17.10 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.01 -6.14 -38.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244840083.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.452 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds