Wall clock time and date at job start Tue Mar 31 2020 12:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35902 * 117.00020 * 2 1 4 4 C 1.38841 * 119.99588 * 0.02603 * 3 2 1 5 5 C 1.38218 * 120.20301 * 180.02562 * 4 3 2 6 6 C 1.50708 * 119.90667 * 179.97438 * 5 4 3 7 7 O 1.42895 * 109.47017 * 89.99917 * 6 5 4 8 8 C 1.38052 * 120.18664 * 359.69893 * 5 4 3 9 9 C 1.39408 * 119.97780 * 0.53139 * 8 5 4 10 10 C 1.48279 * 120.09783 * 179.76522 * 9 8 5 11 11 C 1.39301 * 120.13833 * 309.75032 * 10 9 8 12 12 C 1.37958 * 119.97300 * 179.97438 * 11 10 9 13 13 C 1.38685 * 120.24778 * 359.97438 * 12 11 10 14 14 F 1.35095 * 119.86608 * 179.97438 * 13 12 11 15 15 C 1.38335 * 120.26694 * 0.02562 * 13 12 11 16 16 C 1.38713 * 120.02852 * 359.97438 * 15 13 12 17 17 O 1.35655 * 120.12028 * 180.28100 * 16 15 13 18 18 C 1.34814 * 117.00271 * 354.39901 * 17 16 15 19 19 H 1.08002 * 120.00081 * 5.07140 * 18 17 16 20 20 C 1.38647 * 120.00047 * 185.06873 * 18 17 16 21 21 N 1.31561 * 120.00066 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00039 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46737 * 90.00229 * 22 20 18 24 24 H 1.48504 * 109.47003 * 210.00043 * 22 20 18 25 25 H 1.48500 * 109.47179 * 330.00166 * 22 20 18 26 26 C 1.38489 * 119.99030 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.46903 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46323 * 299.99465 * 1 2 3 29 29 H 1.08994 * 109.47107 * 59.99482 * 1 2 3 30 30 H 1.07999 * 119.89758 * 0.02562 * 4 3 2 31 31 H 1.09003 * 109.46339 * 209.99796 * 6 5 4 32 32 H 1.08998 * 109.46595 * 329.99656 * 6 5 4 33 33 H 0.96705 * 113.99759 * 179.97438 * 7 6 5 34 34 H 1.07994 * 120.01089 * 180.30183 * 8 5 4 35 35 H 1.08009 * 120.00890 * 359.97438 * 11 10 9 36 36 H 1.08002 * 119.88034 * 180.02562 * 12 11 10 37 37 H 1.08006 * 119.98702 * 180.02562 * 15 13 12 38 38 H 0.96999 * 119.99693 * 180.02562 * 21 20 18 39 39 H 1.08000 * 120.09464 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2898 2.3753 0.0005 5 6 1.9128 3.6090 0.0000 6 6 1.0854 4.8687 0.0000 7 8 0.8244 5.2671 1.3473 8 6 3.2909 3.6908 0.0052 9 6 4.0578 2.5266 -0.0002 10 6 5.5381 2.6113 0.0001 11 6 6.1923 3.4246 -0.9224 12 6 7.5698 3.5012 -0.9187 13 6 8.3076 2.7714 0.0012 14 9 9.6562 2.8519 -0.0024 15 6 7.6684 1.9606 0.9218 16 6 6.2839 1.8751 0.9282 17 8 5.6548 1.0850 1.8339 18 6 6.4340 0.3197 2.6243 19 1 7.5089 0.4137 2.5768 20 6 5.8555 -0.5880 3.4981 21 7 6.6158 -1.3345 4.2698 22 14 3.9963 -0.7501 3.5809 23 1 3.5453 -1.7774 2.6079 24 1 3.5954 -1.1568 4.9517 25 1 3.3704 0.5549 3.2487 26 6 3.4290 1.2831 -0.0005 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 0.2114 2.3167 0.0014 31 1 1.6297 5.6608 -0.5142 32 1 0.1419 4.6835 -0.5135 33 1 0.2954 6.0730 1.4236 34 1 3.7747 4.6563 0.0097 35 1 5.6213 3.9949 -1.6403 36 1 8.0754 4.1326 -1.6344 37 1 8.2474 1.3945 1.6365 38 1 6.2111 -1.9698 4.8809 39 1 4.0186 0.3782 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244840083.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:03 Heat of formation + Delta-G solvation = -128.483268 kcal Electronic energy + Delta-G solvation = -26287.312758 eV Core-core repulsion = 22267.809524 eV Total energy + Delta-G solvation = -4019.503234 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.91573 -41.49456 -40.73517 -38.92570 -38.19222 -37.17489 -34.56974 -33.51950 -31.98388 -31.13216 -29.61405 -28.41132 -27.38499 -26.73672 -24.37652 -23.46226 -22.57465 -21.78105 -20.06591 -19.48713 -18.70537 -18.32677 -17.58246 -17.28657 -17.00362 -16.82719 -16.66471 -16.63281 -16.53966 -15.92892 -15.66175 -15.33714 -15.24219 -15.01491 -14.73598 -14.32595 -14.24582 -13.98376 -13.60836 -13.50461 -13.14435 -13.00692 -12.69455 -12.61445 -12.52157 -12.33404 -12.19180 -11.95113 -11.78616 -11.51462 -11.00260 -10.92372 -10.20333 -9.63099 -9.27623 -8.95456 -8.60659 -6.31956 -0.17665 0.36916 0.43390 0.59532 1.21618 1.27420 1.44372 2.18500 2.31722 2.51013 2.68172 2.87593 2.96117 3.31198 3.54638 3.64221 3.93080 3.99887 4.08482 4.15187 4.24073 4.26819 4.31810 4.35401 4.37046 4.47080 4.55645 4.67156 4.69688 4.75497 4.92440 5.05988 5.18063 5.19921 5.26648 5.31698 5.46356 5.54781 5.66641 5.74969 5.82862 6.04031 6.44226 6.73891 6.98997 7.44535 8.50614 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.009074 B = 0.006147 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.062291 B = 4554.011283 C = 6643.766168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.346 6.346 3 C 0.110 3.890 4 C -0.190 4.190 5 C -0.064 4.064 6 C 0.122 3.878 7 O -0.592 6.592 8 C -0.128 4.128 9 C 0.004 3.996 10 C -0.138 4.138 11 C -0.017 4.017 12 C -0.207 4.207 13 C 0.136 3.864 14 F -0.146 7.146 15 C -0.279 4.279 16 C 0.165 3.835 17 O -0.218 6.218 18 C -0.400 4.400 19 H 0.085 0.915 20 C 0.026 3.974 21 N -0.912 5.912 22 Si 0.953 3.047 23 H -0.266 1.266 24 H -0.265 1.265 25 H -0.267 1.267 26 C -0.151 4.151 27 H 0.116 0.884 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.154 0.846 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.400 0.600 34 H 0.148 0.852 35 H 0.178 0.822 36 H 0.169 0.831 37 H 0.120 0.880 38 H 0.287 0.713 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.450 13.168 -13.192 23.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.260 6.260 3 C 0.065 3.935 4 C -0.209 4.209 5 C -0.064 4.064 6 C 0.045 3.955 7 O -0.402 6.402 8 C -0.146 4.146 9 C 0.004 3.996 10 C -0.139 4.139 11 C -0.035 4.035 12 C -0.226 4.226 13 C 0.117 3.883 14 F -0.124 7.124 15 C -0.299 4.299 16 C 0.113 3.887 17 O -0.123 6.123 18 C -0.476 4.476 19 H 0.103 0.897 20 C -0.174 4.174 21 N -0.552 5.552 22 Si 0.776 3.224 23 H -0.191 1.191 24 H -0.190 1.190 25 H -0.192 1.192 26 C -0.170 4.170 27 H 0.135 0.865 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.172 0.828 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.251 0.749 34 H 0.165 0.835 35 H 0.195 0.805 36 H 0.187 0.813 37 H 0.137 0.863 38 H 0.096 0.904 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.203 12.240 -12.834 22.721 hybrid contribution 0.007 -0.511 0.731 0.892 sum -14.196 11.729 -12.103 22.035 Atomic orbital electron populations 1.23382 0.76254 1.05585 1.02510 1.86079 1.23850 1.27124 1.88963 1.18982 0.91768 0.85222 0.97532 1.21334 1.00850 0.90971 1.07745 1.19717 0.93513 0.94871 0.98295 1.21045 0.98191 0.92378 0.83842 1.86567 1.77099 1.49563 1.26979 1.21215 0.93119 0.97644 1.02582 1.18342 0.91267 0.92458 0.97534 1.18237 0.91780 1.04271 0.99597 1.21081 0.93131 0.94081 0.95219 1.21063 0.94217 1.05084 1.02213 1.17686 0.76414 0.97503 0.96741 1.91440 1.29984 1.95043 1.95976 1.21076 0.95012 1.08166 1.05637 1.19245 0.90258 0.90448 0.88715 1.83610 1.35500 1.50103 1.43101 1.20723 0.91384 1.17529 1.18011 0.89743 1.25066 1.03740 0.94110 0.94521 1.69706 1.37657 1.23704 1.24139 0.85460 0.79203 0.79547 0.78155 1.19115 1.18973 1.19197 1.20521 0.92235 0.98112 1.06110 0.86535 0.92196 0.90415 0.82840 0.90098 0.90296 0.74885 0.83459 0.80514 0.81307 0.86259 0.90357 0.88171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.35 -11.67 10.49 -92.44 -0.97 -12.64 16 3 C 0.11 3.87 6.68 22.47 0.15 4.02 16 4 C -0.19 -5.31 8.68 22.41 0.19 -5.12 16 5 C -0.06 -1.67 5.50 -19.91 -0.11 -1.78 16 6 C 0.12 2.06 7.16 71.24 0.51 2.57 16 7 O -0.59 -11.74 13.64 -148.98 -2.03 -13.77 16 8 C -0.13 -3.75 9.16 22.51 0.21 -3.55 16 9 C 0.00 0.15 5.27 -20.06 -0.11 0.05 16 10 C -0.14 -5.24 5.49 -19.93 -0.11 -5.35 16 11 C -0.02 -0.50 9.51 22.46 0.21 -0.29 16 12 C -0.21 -5.99 10.01 22.31 0.22 -5.77 16 13 C 0.14 5.08 7.30 22.40 0.16 5.25 16 14 F -0.15 -5.33 17.26 44.97 0.78 -4.55 16 15 C -0.28 -12.72 9.14 22.41 0.20 -12.52 16 16 C 0.16 7.78 6.55 22.81 0.15 7.93 16 17 O -0.22 -11.94 6.95 -21.53 -0.15 -12.09 16 18 C -0.40 -23.96 9.94 67.92 0.68 -23.28 16 19 H 0.09 5.28 5.44 -2.91 -0.02 5.27 16 20 C 0.03 1.53 5.49 84.83 0.47 2.00 16 21 N -0.91 -55.37 13.96 21.61 0.30 -55.07 16 22 Si 0.95 48.11 28.62 68.60 1.96 50.07 16 23 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.27 -13.96 7.11 99.48 0.71 -13.25 16 26 C -0.15 -6.13 8.72 22.59 0.20 -5.94 16 27 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.06 1.16 7.66 -2.39 -0.02 1.14 16 29 H 0.08 1.21 7.66 -2.39 -0.02 1.19 16 30 H 0.15 3.21 6.28 -2.91 -0.02 3.19 16 31 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 32 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 33 H 0.40 3.33 9.12 -74.05 -0.68 2.66 16 34 H 0.15 3.53 8.04 -2.91 -0.02 3.51 16 35 H 0.18 3.40 8.04 -2.91 -0.02 3.37 16 36 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 37 H 0.12 6.04 5.64 -2.91 -0.02 6.03 16 38 H 0.29 15.98 8.31 -92.71 -0.77 15.21 16 39 H 0.10 4.63 7.70 -2.91 -0.02 4.61 16 Total: -1.00 -76.87 342.91 4.47 -72.40 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.44 Total: 15.97 kcal Atomic # 6 Polarization: -44.45 SS G_CDS: 4.14 Total: -40.31 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.30 Total: -55.07 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -3.15 Total: -38.51 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.78 Total: -4.55 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 1.96 Total: 50.07 kcal Total: -76.87 4.47 -72.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244840083.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.086 kcal (2) G-P(sol) polarization free energy of solvation -76.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds