Wall clock time and date at job start Tue Mar 31 2020 11:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35993 * 117.00363 * 2 1 4 4 C 1.38297 * 120.01446 * 359.97438 * 3 2 1 5 5 C 1.39373 * 119.87947 * 179.72281 * 4 3 2 6 6 C 1.48376 * 120.04624 * 180.25408 * 5 4 3 7 7 N 1.31309 * 126.20658 * 0.02625 * 6 5 4 8 8 O 1.21270 * 110.52055 * 179.97438 * 7 6 5 9 9 C 1.34744 * 109.76763 * 359.97438 * 8 7 6 10 10 C 1.40371 * 126.67487 * 180.02562 * 9 8 7 11 11 H 1.07988 * 119.99723 * 179.97438 * 10 9 8 12 12 C 1.40431 * 119.99725 * 359.97368 * 10 9 8 13 13 N 1.30524 * 120.00276 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99681 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47304 * 59.99700 * 14 12 10 16 16 H 1.48497 * 109.47283 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46760 * 300.00091 * 14 12 10 18 18 N 1.33183 * 106.64259 * 359.73555 * 9 8 7 19 19 C 1.39361 * 119.91016 * 0.27634 * 5 4 3 20 20 C 1.37969 * 120.03075 * 0.02562 * 19 5 4 21 21 C 1.38699 * 120.11512 * 359.97438 * 20 19 5 22 22 O 1.35919 * 119.94997 * 179.97438 * 21 20 19 23 23 C 1.42906 * 117.00269 * 6.09071 * 22 21 20 24 24 C 1.54031 * 113.81388 * 254.22355 * 23 22 21 25 25 O 1.44177 * 85.51746 * 223.19494 * 24 23 22 26 26 C 1.44179 * 93.34097 * 24.19418 * 25 24 23 27 27 H 1.09004 * 109.47070 * 300.00334 * 1 2 3 28 28 H 1.08998 * 109.47309 * 59.99908 * 1 2 3 29 29 H 1.09003 * 109.47813 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.06011 * 359.97438 * 4 3 2 31 31 H 0.96994 * 119.99586 * 180.02562 * 13 12 10 32 32 H 1.08004 * 119.98625 * 179.97438 * 19 5 4 33 33 H 1.07995 * 119.94256 * 180.02562 * 20 19 5 34 34 H 1.08996 * 112.99858 * 26.20692 * 23 22 21 35 35 H 1.08999 * 113.86804 * 337.33808 * 24 23 22 36 36 H 1.09000 * 113.86668 * 109.04953 * 24 23 22 37 37 H 1.09000 * 113.86174 * 221.66350 * 26 25 24 38 38 H 1.08990 * 113.98129 * 89.96834 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2936 2.3718 -0.0005 5 6 1.9293 3.6120 0.0053 6 6 1.1252 4.8590 0.0105 7 7 -0.1856 4.9367 0.0106 8 8 -0.5428 6.0956 0.0160 9 6 0.5348 6.9045 0.0204 10 6 0.5293 8.3082 0.0277 11 1 1.4624 8.8517 0.0312 12 6 -0.6896 9.0056 0.0303 13 7 -1.8174 8.3486 0.0256 14 14 -0.6968 10.8736 0.0392 15 1 0.0020 11.3771 -1.1705 16 1 -2.0988 11.3632 0.0401 17 1 0.0007 11.3654 1.2545 18 7 1.6059 6.1131 0.0232 19 6 3.3213 3.6794 0.0059 20 6 4.0687 2.5198 0.0001 21 6 3.4373 1.2849 -0.0058 22 8 4.1769 0.1446 -0.0120 23 6 5.5923 0.2885 0.1230 24 6 6.3687 0.0558 -1.1868 25 8 7.2900 -0.6988 -0.3741 26 6 6.3003 -0.9796 0.6361 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 0.2150 2.3167 -0.0014 31 1 -2.6593 8.8304 0.0270 32 1 3.8152 4.6399 0.0100 33 1 5.1473 2.5737 0.0009 34 1 5.8794 1.1974 0.6516 35 1 5.8299 -0.5469 -1.9178 36 1 6.7974 0.9631 -1.6125 37 1 6.6747 -0.8935 1.6562 38 1 5.7396 -1.8982 0.4637 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247386295.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:27 Heat of formation + Delta-G solvation = -0.967192 kcal Electronic energy + Delta-G solvation = -25524.514010 eV Core-core repulsion = 21530.460249 eV Total energy + Delta-G solvation = -3994.053761 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.09868 -41.06718 -39.96201 -37.97613 -36.76452 -34.20544 -33.59505 -31.17050 -30.29428 -29.60410 -28.55399 -27.15845 -26.89738 -26.56545 -23.47462 -22.78541 -21.44910 -20.97700 -20.29052 -18.89463 -18.23187 -16.97739 -16.83206 -16.54836 -16.05835 -15.91852 -15.64113 -15.52490 -15.31549 -14.97924 -14.51025 -14.33911 -13.90924 -13.62700 -13.29912 -13.01202 -12.55284 -12.29139 -12.25760 -11.84811 -11.70774 -11.67717 -11.50968 -11.23912 -11.15647 -11.08420 -10.89022 -10.60620 -10.21938 -10.06121 -10.02838 -9.74561 -9.06927 -8.74219 -8.33747 -7.47037 -7.16080 -5.11457 1.26720 1.54036 2.75410 2.91712 2.95644 3.03045 3.19602 3.28408 3.34143 3.61100 3.67939 3.90680 4.31398 4.47327 4.69756 4.77876 4.94156 4.96210 5.03494 5.06076 5.15977 5.17192 5.27038 5.28077 5.35860 5.48793 5.55213 5.60737 5.63389 5.70200 5.76464 6.05813 6.27110 6.40831 6.75765 6.77270 6.93165 7.05778 7.23628 7.61191 7.79510 7.99081 8.20908 8.36582 9.82857 10.21858 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.022759 B = 0.002730 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.990472 B =10253.462462 C =11363.615929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.096 3.904 4 C -0.147 4.147 5 C 0.025 3.975 6 C 0.191 3.809 7 N -0.457 5.457 8 O 0.053 5.947 9 C 0.305 3.695 10 C -0.414 4.414 11 H 0.114 0.886 12 C 0.070 3.930 13 N -0.763 5.763 14 Si 0.938 3.062 15 H -0.259 1.259 16 H -0.274 1.274 17 H -0.259 1.259 18 N -0.604 5.604 19 C -0.080 4.080 20 C -0.176 4.176 21 C 0.090 3.910 22 O -0.292 6.292 23 C 0.011 3.989 24 C 0.021 3.979 25 O -0.373 6.373 26 C 0.046 3.954 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.143 0.857 31 H 0.294 0.706 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.965 -11.738 0.223 14.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.051 3.949 4 C -0.168 4.168 5 C 0.023 3.977 6 C -0.080 4.080 7 N -0.184 5.184 8 O 0.003 5.997 9 C 0.114 3.886 10 C -0.452 4.452 11 H 0.132 0.868 12 C -0.155 4.155 13 N -0.390 5.390 14 Si 0.760 3.240 15 H -0.183 1.183 16 H -0.198 1.198 17 H -0.183 1.183 18 N -0.348 5.348 19 C -0.100 4.100 20 C -0.194 4.194 21 C 0.045 3.955 22 O -0.206 6.206 23 C -0.047 4.047 24 C -0.056 4.056 25 O -0.293 6.293 26 C -0.031 4.031 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.161 0.839 31 H 0.105 0.895 32 H 0.159 0.841 33 H 0.153 0.847 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.913 -12.898 0.180 15.133 hybrid contribution -0.551 1.439 0.032 1.541 sum 7.362 -11.459 0.212 13.622 Atomic orbital electron populations 1.23062 0.78546 1.03563 1.01800 1.86107 1.21036 1.25746 1.89433 1.17976 0.88817 0.84963 1.03145 1.21127 1.00635 0.90266 1.04769 1.17261 0.91785 0.88497 1.00127 1.23168 0.88757 0.92765 1.03310 1.74576 1.13792 1.01218 1.28848 1.85513 1.34005 1.09487 1.70706 1.24154 0.78747 0.94906 0.90757 1.18561 0.95192 0.85290 1.46113 0.86811 1.26206 0.94388 1.03116 0.91783 1.69622 0.99207 1.39666 1.30506 0.85864 0.78576 0.79076 0.80474 1.18303 1.19813 1.18301 1.72351 1.27817 0.98167 1.36487 1.20975 0.92399 0.98477 0.98123 1.20932 1.00026 0.90763 1.07692 1.18196 0.87959 0.85822 1.03551 1.86241 1.17728 1.28827 1.87830 1.26197 0.79763 1.01179 0.97531 1.24656 0.89262 0.96734 0.94976 1.89730 1.29750 1.73889 1.35884 1.24274 0.87311 0.97194 0.94329 0.92540 0.92547 0.88396 0.83942 0.89504 0.84129 0.84659 0.86998 0.88885 0.88292 0.88046 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.72 10.28 -34.37 -0.35 -5.07 16 3 C 0.10 1.60 6.69 -39.17 -0.26 1.33 16 4 C -0.15 -2.71 8.67 -39.14 -0.34 -3.04 16 5 C 0.03 0.52 5.88 -104.88 -0.62 -0.09 16 6 C 0.19 4.81 7.78 -156.50 -1.22 3.60 16 7 N -0.46 -12.24 11.83 31.47 0.37 -11.87 16 8 O 0.05 1.51 9.71 15.16 0.15 1.66 16 9 C 0.30 8.47 7.80 -16.32 -0.13 8.34 16 10 C -0.41 -10.61 9.48 -37.95 -0.36 -10.97 16 11 H 0.11 2.73 7.85 -52.49 -0.41 2.31 16 12 C 0.07 1.65 5.50 -17.28 -0.10 1.56 16 13 N -0.76 -18.89 12.05 55.57 0.67 -18.22 16 14 Si 0.94 17.04 29.56 -169.99 -5.03 12.02 16 15 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 16 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 17 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 18 N -0.60 -16.21 11.29 -11.62 -0.13 -16.34 16 19 C -0.08 -1.41 9.69 -39.26 -0.38 -1.79 16 20 C -0.18 -2.54 9.00 -39.51 -0.36 -2.90 16 21 C 0.09 1.38 6.69 -39.02 -0.26 1.12 16 22 O -0.29 -3.97 9.94 -34.14 -0.34 -4.31 16 23 C 0.01 0.11 3.89 -25.65 -0.10 0.01 16 24 C 0.02 0.19 9.05 37.61 0.34 0.53 16 25 O -0.37 -4.03 12.45 -35.23 -0.44 -4.47 16 26 C 0.05 0.41 9.05 37.61 0.34 0.75 16 27 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 28 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.14 2.59 6.09 -52.49 -0.32 2.27 16 31 H 0.29 6.44 8.29 -40.82 -0.34 6.10 16 32 H 0.14 2.51 7.85 -52.48 -0.41 2.10 16 33 H 0.14 1.51 5.93 -52.49 -0.31 1.20 16 34 H 0.11 1.03 6.03 -51.93 -0.31 0.71 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 335.47 15.07 5.06 5.06 Total: -1.00 -31.28 335.47 -6.29 -37.57 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -3.81 Total: 4.26 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -2.44 Total: -0.28 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.91 Total: -46.44 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.98 Total: -12.19 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.28 -6.29 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247386295.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.604 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds