Wall clock time and date at job start Tue Mar 31 2020 12:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31277 * 1 3 3 Si 1.86805 * 120.00167 * 2 1 4 4 H 1.48487 * 109.47242 * 240.00121 * 3 2 1 5 5 H 1.48508 * 109.46952 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46855 * 119.99806 * 3 2 1 7 7 C 1.39005 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00323 * 180.02562 * 7 2 1 9 9 N 1.37298 * 119.99629 * 0.02562 * 7 2 1 10 10 C 1.36446 * 126.05200 * 179.97438 * 9 7 2 11 11 C 1.35790 * 107.49725 * 179.97438 * 10 9 7 12 12 N 1.40290 * 126.09984 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99707 * 179.97438 * 12 11 10 14 14 O 1.21403 * 120.00386 * 0.02562 * 13 12 11 15 15 C 1.49315 * 119.99715 * 179.72627 * 13 12 11 16 16 O 1.21363 * 119.99813 * 0.28185 * 15 13 12 17 17 N 1.34769 * 119.99908 * 180.27494 * 15 13 12 18 18 C 1.46507 * 120.00057 * 180.02562 * 17 15 13 19 19 C 1.52996 * 109.47159 * 180.02562 * 18 17 15 20 20 C 1.50700 * 109.46969 * 180.02562 * 19 18 17 21 21 C 1.34513 * 125.78843 * 89.99804 * 20 19 18 22 22 C 1.41385 * 106.83785 * 179.97438 * 21 20 19 23 23 C 1.34516 * 106.83976 * 0.02562 * 22 21 20 24 24 O 1.34295 * 108.42221 * 359.73095 * 23 22 21 25 25 C 1.40724 * 107.79819 * 0.26657 * 11 10 9 26 26 N 1.30879 * 108.37752 * 359.54988 * 25 11 10 27 27 H 0.97001 * 120.00185 * 359.97438 * 1 2 3 28 28 H 1.07995 * 126.25144 * 0.02562 * 10 9 7 29 29 H 0.97001 * 119.99808 * 0.02562 * 12 11 10 30 30 H 0.97000 * 120.00347 * 0.02562 * 17 15 13 31 31 H 1.08994 * 109.46849 * 300.00316 * 18 17 15 32 32 H 1.08998 * 109.46926 * 60.00124 * 18 17 15 33 33 H 1.09000 * 109.47439 * 300.00100 * 19 18 17 34 34 H 1.08998 * 109.47408 * 60.00042 * 19 18 17 35 35 H 1.07999 * 126.58401 * 359.97045 * 21 20 19 36 36 H 1.08004 * 126.57918 * 179.97438 * 22 21 20 37 37 H 1.08004 * 125.78600 * 179.97438 * 23 22 21 38 38 H 1.08003 * 125.81096 * 179.72206 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 3.1005 1.6964 -1.2124 5 1 1.2818 2.7465 0.0006 6 1 3.1005 1.6964 1.2126 7 6 2.0078 -1.2038 0.0005 8 1 3.0878 -1.2038 0.0010 9 7 1.3213 -2.3928 0.0005 10 6 1.8751 -3.6398 0.0005 11 6 0.8572 -4.5386 0.0011 12 7 0.9878 -5.9354 0.0008 13 6 -0.1116 -6.7150 0.0020 14 8 -1.2149 -6.2085 0.0028 15 6 0.0275 -8.2016 -0.0045 16 8 1.1304 -8.7079 -0.0057 17 7 -1.0719 -8.9812 -0.0089 18 6 -0.9355 -10.4399 -0.0148 19 6 -2.3242 -11.0819 -0.0196 20 6 -2.1839 -12.5824 -0.0249 21 6 -2.1125 -13.3696 1.0634 22 6 -1.9878 -14.6994 0.5995 23 6 -1.9899 -14.6450 -0.7445 24 8 -2.1145 -13.3608 -1.1172 25 6 -0.3521 -3.8189 -0.0048 26 7 -0.0715 -2.5406 0.0011 27 1 -0.4850 0.8400 0.0004 28 1 2.9302 -3.8700 0.0009 29 1 1.8694 -6.3400 0.0005 30 1 -1.9534 -8.5766 -0.0083 31 1 -0.3891 -10.7501 -0.9053 32 1 -0.3911 -10.7574 0.8745 33 1 -2.8711 -10.7717 0.8708 34 1 -2.8683 -10.7644 -0.9091 35 1 -2.1443 -13.0478 2.0938 36 1 -1.9057 -15.5882 1.2076 37 1 -1.9093 -15.4911 -1.4110 38 1 -1.3430 -4.2484 -0.0101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254896624.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:43 Heat of formation + Delta-G solvation = 33.572019 kcal Electronic energy + Delta-G solvation = -24425.174308 eV Core-core repulsion = 20464.911031 eV Total energy + Delta-G solvation = -3960.263277 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.90654 -40.51223 -39.51628 -37.99689 -36.03851 -34.37961 -33.42141 -33.17930 -32.29753 -30.33651 -28.52632 -27.93545 -25.57002 -24.46819 -22.83540 -22.10178 -21.07468 -20.89294 -20.25652 -19.48715 -18.29650 -17.65615 -17.40075 -16.58757 -16.20930 -16.04736 -15.54059 -15.21138 -15.15160 -14.99137 -14.48835 -14.09491 -13.72388 -13.57495 -13.17219 -13.09269 -13.04100 -12.98857 -12.69320 -12.51212 -11.74686 -11.73196 -11.58942 -11.27781 -11.26830 -10.89666 -10.58668 -10.30440 -10.26613 -9.38105 -9.23448 -9.18551 -8.89171 -8.82133 -8.14123 -6.79383 -6.61208 -4.28770 1.34546 1.62048 2.24192 2.43881 2.77022 2.93777 3.03279 3.06947 3.30697 3.69986 3.74157 3.93068 4.34732 4.35796 4.46822 4.54437 4.60583 4.68822 4.82898 4.97353 5.00078 5.04914 5.35988 5.47006 5.54195 5.62115 5.75539 6.07629 6.14676 6.19056 6.34592 6.73466 6.78140 6.87467 6.88961 7.14664 7.15861 7.73129 7.82668 8.07391 8.17088 8.46582 8.68027 9.30027 9.58668 10.34506 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.060130 B = 0.001832 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.544797 B =15278.507935 C =15550.577748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.047 3.953 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.322 4.322 8 H 0.118 0.882 9 N -0.138 5.138 10 C -0.077 4.077 11 C -0.070 4.070 12 N -0.582 5.582 13 C 0.484 3.516 14 O -0.523 6.523 15 C 0.517 3.483 16 O -0.526 6.526 17 N -0.706 5.706 18 C 0.122 3.878 19 C -0.052 4.052 20 C -0.009 4.009 21 C -0.203 4.203 22 C -0.215 4.215 23 C -0.040 4.040 24 O -0.175 6.175 25 C -0.026 4.026 26 N -0.261 5.261 27 H 0.277 0.723 28 H 0.149 0.851 29 H 0.409 0.591 30 H 0.415 0.585 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.203 0.797 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.123 -22.697 0.349 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.455 4.455 8 H 0.135 0.865 9 N 0.096 4.904 10 C -0.229 4.229 11 C -0.176 4.176 12 N -0.225 5.225 13 C 0.265 3.735 14 O -0.401 6.401 15 C 0.298 3.702 16 O -0.402 6.402 17 N -0.361 5.361 18 C -0.001 4.001 19 C -0.090 4.090 20 C -0.060 4.060 21 C -0.223 4.223 22 C -0.234 4.234 23 C -0.108 4.108 24 O -0.071 6.071 25 C -0.202 4.202 26 N -0.091 5.091 27 H 0.087 0.913 28 H 0.167 0.833 29 H 0.244 0.756 30 H 0.251 0.749 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.167 0.833 36 H 0.166 0.834 37 H 0.219 0.781 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.799 -21.240 0.058 21.578 hybrid contribution 0.872 -0.548 0.211 1.051 sum -2.928 -21.788 0.269 21.986 Atomic orbital electron populations 1.70193 1.06176 1.28273 1.34734 1.25664 0.95731 1.00356 0.95359 0.85869 0.79154 0.79447 0.79554 1.19088 1.20083 1.19091 1.19886 0.91763 0.80487 1.53329 0.86461 1.44560 1.04098 1.03358 1.38426 1.21308 0.96987 0.85198 1.19380 1.17253 0.94645 0.80593 1.25129 1.42141 1.08620 1.04611 1.67113 1.19597 0.85338 0.86766 0.81841 1.90656 1.25401 1.74247 1.49749 1.20295 0.84574 0.88340 0.77009 1.90744 1.25584 1.75739 1.48121 1.45636 1.09971 1.06289 1.74184 1.21384 0.96306 0.78772 1.03649 1.20273 0.97753 0.85464 1.05498 1.22043 1.06478 0.93168 0.84301 1.21661 1.08148 0.92842 0.99617 1.21865 1.08310 0.98367 0.94830 1.24066 1.06024 0.84417 0.96267 1.84029 1.70678 1.17396 1.34959 1.24149 0.97937 0.90756 1.07350 1.78264 0.90086 1.14977 1.25818 0.91283 0.83332 0.75562 0.74851 0.90575 0.90420 0.87751 0.88878 0.83266 0.83389 0.78051 0.80539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.07 11.81 55.50 0.66 -20.41 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 3 Si 0.94 18.60 29.55 -169.99 -5.02 13.57 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.32 -8.40 10.25 -14.82 -0.15 -8.55 16 8 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 9 N -0.14 -3.73 3.73 -11.40 -0.04 -3.77 16 10 C -0.08 -1.81 11.50 -16.38 -0.19 -2.00 16 11 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 12 N -0.58 -10.88 5.45 -10.45 -0.06 -10.94 16 13 C 0.48 8.58 7.85 -11.65 -0.09 8.49 16 14 O -0.52 -10.30 13.62 5.45 0.07 -10.23 16 15 C 0.52 7.63 7.88 -11.65 -0.09 7.53 16 16 O -0.53 -8.64 16.47 5.49 0.09 -8.55 16 17 N -0.71 -7.81 5.55 -60.78 -0.34 -8.14 16 18 C 0.12 1.11 5.66 -4.04 -0.02 1.09 16 19 C -0.05 -0.36 5.86 -27.88 -0.16 -0.52 16 20 C -0.01 -0.08 6.57 -35.62 -0.23 -0.31 16 21 C -0.20 -1.63 10.81 -39.70 -0.43 -2.06 16 22 C -0.21 -1.57 10.91 -39.70 -0.43 -2.01 16 23 C -0.04 -0.28 12.09 29.42 0.36 0.07 16 24 O -0.17 -1.61 10.65 5.73 0.06 -1.55 16 25 C -0.03 -0.67 10.85 -17.02 -0.18 -0.86 16 26 N -0.26 -7.44 10.39 30.81 0.32 -7.12 16 27 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.15 2.91 8.06 -52.49 -0.42 2.49 16 29 H 0.41 6.60 8.29 -40.82 -0.34 6.26 16 30 H 0.41 4.03 7.94 -40.82 -0.32 3.70 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 37 H 0.20 0.68 8.06 -52.48 -0.42 0.26 16 38 H 0.18 4.39 5.92 -52.48 -0.31 4.08 16 LS Contribution 344.26 15.07 5.19 5.19 Total: -1.00 -33.89 344.26 -5.28 -39.17 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -3.90 Total: 13.00 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -2.31 Total: -0.23 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.54 Total: -50.38 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.23 Total: -20.33 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.57 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.89 -5.28 -39.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254896624.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.746 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds