Wall clock time and date at job start Tue Mar 31 2020 12:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31277 * 1 3 3 Si 1.86805 * 120.00167 * 2 1 4 4 H 1.48487 * 109.47242 * 240.00121 * 3 2 1 5 5 H 1.48508 * 109.46952 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46855 * 119.99806 * 3 2 1 7 7 C 1.39005 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00323 * 180.02562 * 7 2 1 9 9 N 1.37298 * 119.99629 * 0.02562 * 7 2 1 10 10 C 1.36446 * 126.05200 * 179.97438 * 9 7 2 11 11 C 1.35790 * 107.49725 * 179.97438 * 10 9 7 12 12 N 1.40290 * 126.09984 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99707 * 179.97438 * 12 11 10 14 14 O 1.21403 * 120.00386 * 0.02562 * 13 12 11 15 15 C 1.49315 * 119.99715 * 179.72627 * 13 12 11 16 16 O 1.21363 * 119.99813 * 0.28185 * 15 13 12 17 17 N 1.34769 * 119.99908 * 180.27494 * 15 13 12 18 18 C 1.46507 * 120.00057 * 180.02562 * 17 15 13 19 19 C 1.52996 * 109.47159 * 180.02562 * 18 17 15 20 20 C 1.50700 * 109.46969 * 180.02562 * 19 18 17 21 21 C 1.34513 * 125.78843 * 89.99804 * 20 19 18 22 22 C 1.41385 * 106.83785 * 179.97438 * 21 20 19 23 23 C 1.34516 * 106.83976 * 0.02562 * 22 21 20 24 24 O 1.34295 * 108.42221 * 359.73095 * 23 22 21 25 25 C 1.40724 * 107.79819 * 0.26657 * 11 10 9 26 26 N 1.30879 * 108.37752 * 359.54988 * 25 11 10 27 27 H 0.97001 * 120.00185 * 359.97438 * 1 2 3 28 28 H 1.07995 * 126.25144 * 0.02562 * 10 9 7 29 29 H 0.97001 * 119.99808 * 0.02562 * 12 11 10 30 30 H 0.97000 * 120.00347 * 0.02562 * 17 15 13 31 31 H 1.08994 * 109.46849 * 300.00316 * 18 17 15 32 32 H 1.08998 * 109.46926 * 60.00124 * 18 17 15 33 33 H 1.09000 * 109.47439 * 300.00100 * 19 18 17 34 34 H 1.08998 * 109.47408 * 60.00042 * 19 18 17 35 35 H 1.07999 * 126.58401 * 359.97045 * 21 20 19 36 36 H 1.08004 * 126.57918 * 179.97438 * 22 21 20 37 37 H 1.08004 * 125.78600 * 179.97438 * 23 22 21 38 38 H 1.08003 * 125.81096 * 179.72206 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 3.1005 1.6964 -1.2124 5 1 1.2818 2.7465 0.0006 6 1 3.1005 1.6964 1.2126 7 6 2.0078 -1.2038 0.0005 8 1 3.0878 -1.2038 0.0010 9 7 1.3213 -2.3928 0.0005 10 6 1.8751 -3.6398 0.0005 11 6 0.8572 -4.5386 0.0011 12 7 0.9878 -5.9354 0.0008 13 6 -0.1116 -6.7150 0.0020 14 8 -1.2149 -6.2085 0.0028 15 6 0.0275 -8.2016 -0.0045 16 8 1.1304 -8.7079 -0.0057 17 7 -1.0719 -8.9812 -0.0089 18 6 -0.9355 -10.4399 -0.0148 19 6 -2.3242 -11.0819 -0.0196 20 6 -2.1839 -12.5824 -0.0249 21 6 -2.1125 -13.3696 1.0634 22 6 -1.9878 -14.6994 0.5995 23 6 -1.9899 -14.6450 -0.7445 24 8 -2.1145 -13.3608 -1.1172 25 6 -0.3521 -3.8189 -0.0048 26 7 -0.0715 -2.5406 0.0011 27 1 -0.4850 0.8400 0.0004 28 1 2.9302 -3.8700 0.0009 29 1 1.8694 -6.3400 0.0005 30 1 -1.9534 -8.5766 -0.0083 31 1 -0.3891 -10.7501 -0.9053 32 1 -0.3911 -10.7574 0.8745 33 1 -2.8711 -10.7717 0.8708 34 1 -2.8683 -10.7644 -0.9091 35 1 -2.1443 -13.0478 2.0938 36 1 -1.9057 -15.5882 1.2076 37 1 -1.9093 -15.4911 -1.4110 38 1 -1.3430 -4.2484 -0.0101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254896624.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:42 Heat of formation + Delta-G solvation = 8.705625 kcal Electronic energy + Delta-G solvation = -24426.252595 eV Core-core repulsion = 20464.911031 eV Total energy + Delta-G solvation = -3961.341565 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.47304 -42.01973 -41.16181 -39.45489 -37.03265 -35.98154 -34.99410 -34.02800 -33.04972 -32.28736 -29.95131 -29.05566 -27.18541 -25.79223 -23.88281 -22.87397 -22.66191 -21.88483 -21.37023 -21.11953 -19.70389 -19.16335 -18.22232 -17.63797 -17.43866 -17.15084 -17.04527 -16.73244 -16.29513 -16.05786 -15.67924 -15.39070 -15.14676 -14.97158 -14.81200 -14.52164 -13.72060 -13.54487 -13.50270 -13.40623 -13.36912 -13.18238 -12.96090 -12.87997 -12.51945 -12.34419 -12.12685 -11.95610 -11.04891 -10.86751 -10.83901 -10.61082 -10.36444 -10.13382 -9.39212 -8.61760 -8.48133 -6.26029 0.27937 0.75794 1.28068 1.31273 1.42402 1.57695 1.73077 1.73449 2.04412 2.09200 2.16559 2.54021 2.60804 2.94648 3.08311 3.52002 3.81006 3.83174 3.99837 4.16790 4.31531 4.40463 4.45057 4.53144 4.72034 4.84300 4.96191 4.97013 4.98795 5.07505 5.11002 5.22343 5.25291 5.31172 5.62808 5.89922 5.98549 6.22306 6.25401 6.48710 6.67832 6.79045 7.07167 7.41715 7.63587 8.50837 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.060130 B = 0.001832 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.544797 B =15278.507935 C =15550.577748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C -0.004 4.004 3 Si 1.019 2.981 4 H -0.254 1.254 5 H -0.277 1.277 6 H -0.254 1.254 7 C -0.355 4.355 8 H 0.141 0.859 9 N -0.163 5.163 10 C -0.075 4.075 11 C -0.057 4.057 12 N -0.583 5.583 13 C 0.487 3.513 14 O -0.541 6.541 15 C 0.526 3.474 16 O -0.541 6.541 17 N -0.686 5.686 18 C 0.125 3.875 19 C -0.043 4.043 20 C -0.028 4.028 21 C -0.213 4.213 22 C -0.230 4.230 23 C -0.043 4.043 24 O -0.194 6.194 25 C -0.047 4.047 26 N -0.308 5.308 27 H 0.278 0.722 28 H 0.188 0.812 29 H 0.423 0.577 30 H 0.423 0.577 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.123 0.877 34 H 0.101 0.899 35 H 0.161 0.839 36 H 0.166 0.834 37 H 0.233 0.767 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 -24.116 0.463 24.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.217 4.217 3 Si 0.838 3.162 4 H -0.178 1.178 5 H -0.202 1.202 6 H -0.178 1.178 7 C -0.486 4.486 8 H 0.159 0.841 9 N 0.069 4.931 10 C -0.226 4.226 11 C -0.164 4.164 12 N -0.227 5.227 13 C 0.269 3.731 14 O -0.419 6.419 15 C 0.306 3.694 16 O -0.419 6.419 17 N -0.340 5.340 18 C 0.002 3.998 19 C -0.081 4.081 20 C -0.078 4.078 21 C -0.232 4.232 22 C -0.249 4.249 23 C -0.110 4.110 24 O -0.091 6.091 25 C -0.223 4.223 26 N -0.140 5.140 27 H 0.088 0.912 28 H 0.205 0.795 29 H 0.261 0.739 30 H 0.261 0.739 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.141 0.859 34 H 0.119 0.881 35 H 0.179 0.821 36 H 0.183 0.817 37 H 0.250 0.750 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.723 -22.722 0.174 22.886 hybrid contribution 0.471 -0.385 0.180 0.634 sum -2.251 -23.107 0.354 23.219 Atomic orbital electron populations 1.70365 1.08361 1.29336 1.36764 1.26872 0.96494 1.04275 0.94015 0.84649 0.77576 0.73731 0.80248 1.17793 1.20185 1.17786 1.20622 0.93057 0.80845 1.54052 0.84122 1.44832 1.03746 1.04723 1.39808 1.22008 0.98853 0.84201 1.17531 1.17294 0.93473 0.82544 1.23052 1.42085 1.09863 1.02952 1.67831 1.20222 0.84634 0.88227 0.80033 1.90649 1.26226 1.75132 1.49943 1.19641 0.85250 0.86794 0.77725 1.90750 1.26262 1.75390 1.49488 1.45601 1.09342 1.07069 1.71969 1.21490 0.97917 0.77041 1.03331 1.20238 0.96355 0.84595 1.06862 1.22281 1.07452 0.93752 0.84355 1.21979 1.07671 0.93349 1.00206 1.22206 1.08507 0.98828 0.95347 1.24771 1.04814 0.84427 0.97016 1.84021 1.71092 1.18367 1.35634 1.24269 0.98956 0.90739 1.08315 1.78158 0.91821 1.16513 1.27476 0.91223 0.79538 0.73910 0.73863 0.91272 0.90329 0.85883 0.88096 0.82133 0.81676 0.75039 0.80596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.49 11.81 21.66 0.26 -46.24 16 2 C 0.00 -0.22 5.50 84.96 0.47 0.25 16 3 Si 1.02 37.92 29.55 68.60 2.03 39.95 16 4 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 5 H -0.28 -10.19 7.11 99.48 0.71 -9.49 16 6 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 7 C -0.35 -18.54 10.25 84.02 0.86 -17.68 16 8 H 0.14 6.36 7.83 -2.91 -0.02 6.34 16 9 N -0.16 -8.94 3.73 -189.98 -0.71 -9.65 16 10 C -0.08 -3.46 11.50 83.41 0.96 -2.51 16 11 C -0.06 -2.62 6.90 37.83 0.26 -2.36 16 12 N -0.58 -21.17 5.45 -305.32 -1.66 -22.83 16 13 C 0.49 16.81 7.85 87.23 0.69 17.50 16 14 O -0.54 -21.14 13.62 -3.41 -0.05 -21.18 16 15 C 0.53 14.71 7.88 87.23 0.69 15.40 16 16 O -0.54 -16.86 16.47 -3.29 -0.05 -16.92 16 17 N -0.69 -13.91 5.55 -464.56 -2.58 -16.49 16 18 C 0.12 2.04 5.66 86.38 0.49 2.53 16 19 C -0.04 -0.51 5.86 29.85 0.17 -0.33 16 20 C -0.03 -0.44 6.57 24.83 0.16 -0.27 16 21 C -0.21 -3.10 10.81 22.19 0.24 -2.86 16 22 C -0.23 -2.99 10.91 22.19 0.24 -2.75 16 23 C -0.04 -0.54 12.09 66.97 0.81 0.27 16 24 O -0.19 -3.35 10.65 -2.42 -0.03 -3.38 16 25 C -0.05 -2.49 10.85 85.44 0.93 -1.57 16 26 N -0.31 -18.16 10.39 -56.43 -0.59 -18.75 16 27 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.19 6.89 8.06 -2.91 -0.02 6.86 16 29 H 0.42 12.95 8.29 -92.71 -0.77 12.18 16 30 H 0.42 7.40 7.94 -92.71 -0.74 6.66 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.23 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.18 9.04 5.92 -2.91 -0.02 9.02 16 Total: -1.00 -75.35 344.26 3.22 -72.13 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: -0.37 Total: 37.73 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 6.97 Total: 5.63 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -5.28 Total: -113.96 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -0.13 Total: -41.48 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -75.35 3.22 -72.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254896624.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.836 kcal (2) G-P(sol) polarization free energy of solvation -75.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds