Wall clock time and date at job start Tue Mar 31 2020 11:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47017 * 2 1 4 4 C 1.50697 * 109.47484 * 239.99412 * 2 1 3 5 5 H 1.07998 * 120.00695 * 240.00165 * 4 2 1 6 6 C 1.37882 * 119.99444 * 59.99662 * 4 2 1 7 7 N 1.31512 * 120.00478 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99740 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47254 * 180.02562 * 8 6 4 10 10 H 1.48505 * 109.47430 * 300.00674 * 8 6 4 11 11 H 1.48503 * 109.47086 * 60.00406 * 8 6 4 12 12 N 1.46503 * 109.46795 * 119.99631 * 2 1 3 13 13 C 1.34778 * 119.99955 * 274.99950 * 12 2 1 14 14 O 1.21359 * 119.99837 * 359.97438 * 13 12 2 15 15 C 1.49354 * 119.99857 * 180.02562 * 13 12 2 16 16 O 1.21376 * 120.00017 * 359.97438 * 15 13 12 17 17 N 1.34778 * 119.99857 * 180.02562 * 15 13 12 18 18 C 1.39754 * 119.99975 * 175.52986 * 17 15 13 19 19 C 1.39206 * 120.10455 * 34.65868 * 18 17 15 20 20 C 1.38204 * 120.13181 * 179.97438 * 19 18 17 21 21 C 1.38040 * 120.41666 * 0.02562 * 20 19 18 22 22 C 1.39624 * 119.95417 * 0.02562 * 21 20 19 23 23 C 1.38205 * 120.10921 * 214.37468 * 18 17 15 24 24 C 1.50785 * 133.38388 * 0.03265 * 23 18 17 25 25 O 1.45400 * 106.40476 * 179.97438 * 24 23 18 26 26 C 1.34354 * 108.99470 * 359.49261 * 25 24 23 27 27 O 1.21470 * 124.89602 * 179.90109 * 26 25 24 28 28 H 1.08998 * 109.47312 * 300.00412 * 1 2 3 29 29 H 1.09003 * 109.47335 * 60.00540 * 1 2 3 30 30 H 1.09005 * 109.47131 * 180.02562 * 1 2 3 31 31 H 0.96993 * 120.00129 * 179.97438 * 7 6 4 32 32 H 0.97002 * 119.99761 * 95.00385 * 12 2 1 33 33 H 0.97001 * 119.99946 * 355.53527 * 17 15 13 34 34 H 1.07999 * 119.93049 * 359.97316 * 19 18 17 35 35 H 1.07999 * 119.79457 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.02119 * 179.97438 * 21 20 19 37 37 H 1.09003 * 110.06402 * 299.22889 * 24 23 18 38 38 H 1.08997 * 110.07089 * 60.70194 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6035 8 14 2.3226 -1.1198 -4.0078 9 1 1.8279 -0.4196 -5.2204 10 1 3.8076 -1.1192 -4.0076 11 1 1.8282 -2.5201 -4.0080 12 7 2.0183 -0.6906 1.1963 13 6 2.1469 -0.0181 2.3572 14 8 1.8588 1.1595 2.4114 15 6 2.6453 -0.7220 3.5766 16 8 2.9339 -1.8997 3.5222 17 7 2.7735 -0.0497 4.7376 18 6 3.1499 -0.7281 5.9000 19 6 4.0421 -1.7943 5.8283 20 6 4.4152 -2.4652 6.9775 21 6 3.9079 -2.0861 8.2040 22 6 3.0115 -1.0188 8.2880 23 6 2.6423 -0.3389 7.1251 24 6 1.6867 0.7462 7.5528 25 8 1.5564 0.6331 8.9966 26 6 2.3144 -0.3901 9.4252 27 8 2.4199 -0.7391 10.5839 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7095 1.1615 -3.4844 32 1 2.2490 -1.6317 1.1527 33 1 2.6043 0.9050 4.7665 34 1 4.4435 -2.0977 4.8727 35 1 5.1080 -3.2913 6.9156 36 1 4.2035 -2.6151 9.0980 37 1 2.0890 1.7242 7.2887 38 1 0.7172 0.5999 7.0767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261144082.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:33 Heat of formation + Delta-G solvation = -107.374772 kcal Electronic energy + Delta-G solvation = -25469.488029 eV Core-core repulsion = 21470.820089 eV Total energy + Delta-G solvation = -3998.667940 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.05253 -40.77433 -38.99528 -37.98813 -37.61072 -35.61057 -34.81479 -32.55570 -32.28529 -30.45096 -29.26479 -27.63386 -25.53718 -25.32809 -24.15273 -22.72006 -21.56945 -20.53113 -19.85954 -18.92006 -18.27117 -17.44069 -17.15883 -16.66463 -16.35134 -16.16963 -15.90930 -15.49339 -15.25579 -14.84563 -14.43580 -14.31469 -14.03898 -13.76172 -13.66318 -13.40151 -13.17370 -12.63631 -12.58584 -12.02930 -11.91309 -11.43553 -11.32238 -11.22535 -11.08473 -10.91790 -10.90819 -10.69296 -10.46470 -10.35744 -9.48375 -9.29877 -9.23424 -8.72839 -8.67443 -8.27528 -6.25947 -4.36279 0.16651 0.60381 1.57776 2.12168 2.35203 2.66818 3.19193 3.19721 3.24758 3.26189 3.27026 3.48339 3.67719 3.80789 4.24484 4.40795 4.62499 4.69438 4.78958 4.85331 4.91073 5.02193 5.07294 5.14749 5.54155 5.64725 5.84657 5.92543 6.20447 6.38306 6.60431 6.71097 6.77377 6.90912 7.05985 7.07501 7.23592 7.50325 7.58769 7.70965 7.94951 8.27521 8.46159 8.72659 9.31203 10.80017 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.030497 B = 0.002547 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.901861 B =10992.657976 C =11707.852561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.540 4.540 5 H 0.064 0.936 6 C 0.069 3.931 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.665 5.665 13 C 0.495 3.505 14 O -0.533 6.533 15 C 0.511 3.489 16 O -0.501 6.501 17 N -0.654 5.654 18 C 0.174 3.826 19 C -0.080 4.080 20 C -0.105 4.105 21 C -0.049 4.049 22 C -0.177 4.177 23 C -0.132 4.132 24 C 0.095 3.905 25 O -0.316 6.316 26 C 0.525 3.475 27 O -0.453 6.453 28 H 0.016 0.984 29 H 0.095 0.905 30 H 0.030 0.970 31 H 0.267 0.733 32 H 0.403 0.597 33 H 0.425 0.575 34 H 0.157 0.843 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.120 0.880 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.779 -2.924 17.184 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.162 3.838 3 H 0.073 0.927 4 C -0.578 4.578 5 H 0.082 0.918 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.210 1.210 10 H -0.201 1.201 11 H -0.200 1.200 12 N -0.313 5.313 13 C 0.273 3.727 14 O -0.412 6.412 15 C 0.295 3.705 16 O -0.374 6.374 17 N -0.301 5.301 18 C 0.079 3.921 19 C -0.100 4.100 20 C -0.124 4.124 21 C -0.068 4.068 22 C -0.179 4.179 23 C -0.136 4.136 24 C 0.020 3.980 25 O -0.231 6.231 26 C 0.367 3.633 27 O -0.338 6.338 28 H 0.036 0.964 29 H 0.114 0.886 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.237 0.763 33 H 0.264 0.736 34 H 0.174 0.826 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.138 0.862 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.538 -2.790 17.557 18.348 hybrid contribution 0.337 -0.483 -0.998 1.159 sum 4.876 -3.273 16.560 17.570 Atomic orbital electron populations 1.22110 0.97728 0.99640 1.01295 1.19009 0.91501 0.94140 0.79190 0.92694 1.21136 1.33072 1.13605 0.89985 0.91757 1.24874 0.94612 0.94904 0.99121 1.69869 1.35505 1.22264 1.24323 0.86442 0.79234 0.79628 0.81457 1.21035 1.20058 1.20008 1.46545 1.60964 1.14584 1.09246 1.19556 0.81472 0.87307 0.84381 1.90746 1.50814 1.15087 1.84513 1.21096 0.77665 0.87031 0.84756 1.90730 1.46563 1.15619 1.84490 1.43249 1.67117 1.13348 1.06421 1.16810 0.95923 0.95704 0.83631 1.21711 0.93699 0.93909 1.00720 1.21149 1.00059 1.00123 0.91049 1.20894 0.93468 0.93725 0.98695 1.20595 1.03114 1.00476 0.93721 1.20487 0.99847 0.99809 0.93419 1.22383 1.00303 0.98544 0.76737 1.87259 1.62975 1.48771 1.24091 1.20463 0.76752 0.78051 0.88019 1.90890 1.61025 1.62520 1.19376 0.96449 0.88628 0.95039 0.92291 0.76251 0.73641 0.82598 0.83908 0.84371 0.86247 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.26 37.16 0.34 -3.10 16 2 C 0.26 6.19 2.56 -69.08 -0.18 6.02 16 3 H 0.06 1.47 7.58 -51.93 -0.39 1.07 16 4 C -0.54 -13.56 8.73 -34.44 -0.30 -13.86 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -23.55 11.32 55.43 0.63 -22.93 16 8 Si 0.91 19.80 29.54 -169.99 -5.02 14.78 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 12 N -0.66 -13.00 5.06 -55.40 -0.28 -13.28 16 13 C 0.49 8.79 7.85 -11.63 -0.09 8.70 16 14 O -0.53 -10.53 16.14 5.49 0.09 -10.45 16 15 C 0.51 7.32 7.73 -11.63 -0.09 7.23 16 16 O -0.50 -7.67 13.89 5.47 0.08 -7.60 16 17 N -0.65 -7.22 5.32 -10.39 -0.06 -7.27 16 18 C 0.17 1.79 6.29 -83.90 -0.53 1.26 16 19 C -0.08 -0.81 8.71 -39.23 -0.34 -1.15 16 20 C -0.11 -0.85 10.01 -39.67 -0.40 -1.24 16 21 C -0.05 -0.42 10.10 -39.14 -0.40 -0.82 16 22 C -0.18 -1.78 6.27 -105.09 -0.66 -2.44 16 23 C -0.13 -1.23 6.30 -104.06 -0.66 -1.88 16 24 C 0.09 0.70 7.92 36.05 0.29 0.99 16 25 O -0.32 -3.31 11.13 -39.21 -0.44 -3.75 16 26 C 0.53 6.19 8.58 34.49 0.30 6.49 16 27 O -0.45 -6.59 18.04 -18.92 -0.34 -6.93 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.40 7.28 8.01 -40.82 -0.33 6.95 16 33 H 0.43 3.99 8.29 -40.82 -0.34 3.65 16 34 H 0.16 1.69 6.20 -52.49 -0.33 1.36 16 35 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -30.28 338.26 -6.83 -37.10 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -3.78 Total: 7.36 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: -2.80 Total: 7.86 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.29 Total: -43.48 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.61 Total: -28.72 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.28 -6.83 -37.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261144082.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.271 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds