Wall clock time and date at job start Tue Mar 31 2020 11:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47017 * 2 1 4 4 C 1.50697 * 109.47484 * 239.99412 * 2 1 3 5 5 H 1.07998 * 120.00695 * 240.00165 * 4 2 1 6 6 C 1.37882 * 119.99444 * 59.99662 * 4 2 1 7 7 N 1.31512 * 120.00478 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99740 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47254 * 180.02562 * 8 6 4 10 10 H 1.48505 * 109.47430 * 300.00674 * 8 6 4 11 11 H 1.48503 * 109.47086 * 60.00406 * 8 6 4 12 12 N 1.46503 * 109.46795 * 119.99631 * 2 1 3 13 13 C 1.34778 * 119.99955 * 274.99950 * 12 2 1 14 14 O 1.21359 * 119.99837 * 359.97438 * 13 12 2 15 15 C 1.49354 * 119.99857 * 180.02562 * 13 12 2 16 16 O 1.21376 * 120.00017 * 359.97438 * 15 13 12 17 17 N 1.34778 * 119.99857 * 180.02562 * 15 13 12 18 18 C 1.39754 * 119.99975 * 175.52986 * 17 15 13 19 19 C 1.39206 * 120.10455 * 34.65868 * 18 17 15 20 20 C 1.38204 * 120.13181 * 179.97438 * 19 18 17 21 21 C 1.38040 * 120.41666 * 0.02562 * 20 19 18 22 22 C 1.39624 * 119.95417 * 0.02562 * 21 20 19 23 23 C 1.38205 * 120.10921 * 214.37468 * 18 17 15 24 24 C 1.50785 * 133.38388 * 0.03265 * 23 18 17 25 25 O 1.45400 * 106.40476 * 179.97438 * 24 23 18 26 26 C 1.34354 * 108.99470 * 359.49261 * 25 24 23 27 27 O 1.21470 * 124.89602 * 179.90109 * 26 25 24 28 28 H 1.08998 * 109.47312 * 300.00412 * 1 2 3 29 29 H 1.09003 * 109.47335 * 60.00540 * 1 2 3 30 30 H 1.09005 * 109.47131 * 180.02562 * 1 2 3 31 31 H 0.96993 * 120.00129 * 179.97438 * 7 6 4 32 32 H 0.97002 * 119.99761 * 95.00385 * 12 2 1 33 33 H 0.97001 * 119.99946 * 355.53527 * 17 15 13 34 34 H 1.07999 * 119.93049 * 359.97316 * 19 18 17 35 35 H 1.07999 * 119.79457 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.02119 * 179.97438 * 21 20 19 37 37 H 1.09003 * 110.06402 * 299.22889 * 24 23 18 38 38 H 1.08997 * 110.07089 * 60.70194 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6035 8 14 2.3226 -1.1198 -4.0078 9 1 1.8279 -0.4196 -5.2204 10 1 3.8076 -1.1192 -4.0076 11 1 1.8282 -2.5201 -4.0080 12 7 2.0183 -0.6906 1.1963 13 6 2.1469 -0.0181 2.3572 14 8 1.8588 1.1595 2.4114 15 6 2.6453 -0.7220 3.5766 16 8 2.9339 -1.8997 3.5222 17 7 2.7735 -0.0497 4.7376 18 6 3.1499 -0.7281 5.9000 19 6 4.0421 -1.7943 5.8283 20 6 4.4152 -2.4652 6.9775 21 6 3.9079 -2.0861 8.2040 22 6 3.0115 -1.0188 8.2880 23 6 2.6423 -0.3389 7.1251 24 6 1.6867 0.7462 7.5528 25 8 1.5564 0.6331 8.9966 26 6 2.3144 -0.3901 9.4252 27 8 2.4199 -0.7391 10.5839 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7095 1.1615 -3.4844 32 1 2.2490 -1.6317 1.1527 33 1 2.6043 0.9050 4.7665 34 1 4.4435 -2.0977 4.8727 35 1 5.1080 -3.2913 6.9156 36 1 4.2035 -2.6151 9.0980 37 1 2.0890 1.7242 7.2887 38 1 0.7172 0.5999 7.0767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261144082.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:32 Heat of formation + Delta-G solvation = -127.705251 kcal Electronic energy + Delta-G solvation = -25470.369624 eV Core-core repulsion = 21470.820089 eV Total energy + Delta-G solvation = -3999.549535 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.87196 -41.91090 -40.20725 -39.08710 -38.49957 -37.06735 -36.06128 -34.34157 -33.03372 -31.39103 -30.94538 -28.35487 -27.37138 -26.52504 -25.18266 -23.48432 -22.96870 -21.64675 -21.22135 -20.22505 -19.14184 -18.48504 -18.05377 -17.88742 -17.72198 -17.12039 -16.97879 -16.94159 -16.56682 -15.96294 -15.81382 -15.24236 -15.00302 -14.82752 -14.77686 -14.46604 -14.43393 -14.02950 -13.73273 -13.47207 -13.07164 -12.89903 -12.79256 -12.70849 -12.55577 -12.28413 -12.14758 -12.08011 -11.80005 -11.60604 -11.16262 -10.72023 -10.60191 -10.16929 -9.98508 -9.48615 -8.19840 -6.36929 -0.61182 -0.22270 0.43300 1.16381 1.30704 1.47746 1.47998 1.56181 1.91927 2.09245 2.38432 2.48729 2.55003 2.63880 2.96774 3.11429 3.43161 3.73128 3.96669 4.11488 4.13323 4.18591 4.33018 4.49052 4.70983 4.78520 4.89404 4.92071 5.02575 5.08055 5.20188 5.30969 5.42523 5.43889 5.58605 5.63168 5.74893 5.89195 6.04702 6.20029 6.44238 6.64924 6.73303 7.06492 7.35518 8.85901 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.030497 B = 0.002547 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.901861 B =10992.657976 C =11707.852561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.269 3.731 3 H 0.017 0.983 4 C -0.553 4.553 5 H 0.072 0.928 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.969 3.031 9 H -0.285 1.285 10 H -0.271 1.271 11 H -0.267 1.267 12 N -0.670 5.670 13 C 0.496 3.504 14 O -0.554 6.554 15 C 0.524 3.476 16 O -0.511 6.511 17 N -0.635 5.635 18 C 0.156 3.844 19 C -0.086 4.086 20 C -0.097 4.097 21 C -0.042 4.042 22 C -0.193 4.193 23 C -0.119 4.119 24 C 0.089 3.911 25 O -0.325 6.325 26 C 0.526 3.474 27 O -0.491 6.491 28 H 0.022 0.978 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.267 0.733 32 H 0.411 0.589 33 H 0.433 0.567 34 H 0.149 0.851 35 H 0.173 0.827 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.606 -4.038 17.669 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.167 3.833 3 H 0.035 0.965 4 C -0.591 4.591 5 H 0.090 0.910 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.794 3.206 9 H -0.211 1.211 10 H -0.196 1.196 11 H -0.192 1.192 12 N -0.319 5.319 13 C 0.275 3.725 14 O -0.434 6.434 15 C 0.307 3.693 16 O -0.385 6.385 17 N -0.283 5.283 18 C 0.062 3.938 19 C -0.106 4.106 20 C -0.115 4.115 21 C -0.060 4.060 22 C -0.196 4.196 23 C -0.122 4.122 24 C 0.016 3.984 25 O -0.240 6.240 26 C 0.370 3.630 27 O -0.380 6.380 28 H 0.041 0.959 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.247 0.753 33 H 0.273 0.727 34 H 0.167 0.833 35 H 0.190 0.810 36 H 0.173 0.827 37 H 0.167 0.833 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.374 -3.897 18.078 19.259 hybrid contribution 0.099 -0.091 -1.063 1.071 sum 5.473 -3.987 17.016 18.313 Atomic orbital electron populations 1.21939 0.97506 0.99803 1.00387 1.18598 0.91628 0.92431 0.80635 0.96507 1.21473 1.33068 1.13827 0.90735 0.91034 1.25698 0.94753 0.95525 1.02031 1.70000 1.36569 1.23578 1.24881 0.85440 0.78696 0.78699 0.77784 1.21064 1.19618 1.19154 1.46263 1.61747 1.14891 1.08999 1.20060 0.80400 0.87021 0.84972 1.90731 1.51368 1.16193 1.85091 1.20179 0.78136 0.86578 0.84452 1.90739 1.47406 1.15765 1.84577 1.42993 1.66000 1.13629 1.05677 1.16829 0.97208 0.96520 0.83225 1.21815 0.93687 0.93938 1.01184 1.21415 0.99892 1.00329 0.89913 1.21199 0.92282 0.92891 0.99649 1.20606 1.04207 1.01572 0.93166 1.20510 0.99355 0.99733 0.92629 1.22761 1.01057 0.99432 0.75135 1.87236 1.62617 1.48259 1.25851 1.20672 0.76474 0.77978 0.87894 1.90861 1.62505 1.63758 1.20831 0.95884 0.90930 0.94195 0.92336 0.75304 0.72659 0.83335 0.80987 0.82675 0.83286 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.41 9.26 71.98 0.67 -5.75 16 2 C 0.27 12.89 2.56 44.24 0.11 13.01 16 3 H 0.02 0.94 7.58 -2.39 -0.02 0.92 16 4 C -0.55 -27.78 8.73 25.60 0.22 -27.56 16 5 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 6 C 0.02 1.06 5.30 84.66 0.45 1.51 16 7 N -0.91 -49.38 11.32 21.45 0.24 -49.14 16 8 Si 0.97 40.24 29.54 68.60 2.03 42.27 16 9 H -0.29 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 11 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 12 N -0.67 -26.06 5.06 -447.53 -2.27 -28.33 16 13 C 0.50 17.37 7.85 87.24 0.68 18.05 16 14 O -0.55 -21.83 16.14 -3.27 -0.05 -21.89 16 15 C 0.52 14.30 7.73 87.24 0.67 14.98 16 16 O -0.51 -14.86 13.89 -3.33 -0.05 -14.91 16 17 N -0.64 -12.86 5.32 -305.15 -1.62 -14.48 16 18 C 0.16 2.87 6.29 38.10 0.24 3.11 16 19 C -0.09 -1.54 8.71 22.49 0.20 -1.34 16 20 C -0.10 -1.29 10.01 22.21 0.22 -1.07 16 21 C -0.04 -0.61 10.10 22.56 0.23 -0.39 16 22 C -0.19 -3.55 6.27 -20.17 -0.13 -3.67 16 23 C -0.12 -1.95 6.30 -19.50 -0.12 -2.07 16 24 C 0.09 1.11 7.92 71.26 0.56 1.68 16 25 O -0.32 -6.36 11.13 -52.98 -0.59 -6.95 16 26 C 0.53 11.93 8.58 70.25 0.60 12.53 16 27 O -0.49 -14.24 18.04 19.62 0.35 -13.88 16 28 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 30 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 32 H 0.41 14.60 8.01 -92.71 -0.74 13.86 16 33 H 0.43 7.29 8.29 -92.71 -0.77 6.52 16 34 H 0.15 2.94 6.20 -2.91 -0.02 2.92 16 35 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 36 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -65.69 338.26 2.30 -63.39 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -0.36 Total: 20.89 kcal Atomic # 6 Polarization: 18.41 SS G_CDS: 4.62 Total: 23.03 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -3.65 Total: -91.95 kcal Atomic # 8 Polarization: -57.30 SS G_CDS: -0.33 Total: -57.63 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -65.69 2.30 -63.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261144082.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.313 kcal (2) G-P(sol) polarization free energy of solvation -65.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds